mRNA_S-dermatodea_contig1009.62.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1009.62.1
Unique NamemRNA_S-dermatodea_contig1009.62.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1009.62.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 4.340e-25
Identity = 55/93 (59.14%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:  127 LETTADIVRSVADFVPEDEYLFFASVCRGWKDAWTPRPTVTTAATAHTSVPQLLHSFQCGLPRTRAVCNALARAGNLDALRKARRRGCPWTHD 405
            L    DIV +VA+FV +++YLFFASV RGW+D W  RPTVT A TA TSVPQL  SF+CGL RT AVC  +A  G LD LR+AR  GC W  +
Sbjct:    3 LFAAVDIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCQWNEN 95
[Close]
BLAST of mRNA_S-dermatodea_contig1009.62.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.860e-23
Identity = 54/93 (58.06%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:  127 LETTADIVRSVADFVPEDEYLFFASVCRGWKDAWTPRPTVTTAATAHTSVPQLLHSFQCGLPRTRAVCNALARAGNLDALRKARRRGCPWTHD 405
            L    DIV +V +FV +++YLFFASV RGW+D W  RPTVT A TA TSV QL  SF+CGL RT AVC  +A  G LD LR+AR  GCPW  +
Sbjct:    5 LFAAVDIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCPWNEN 97
[Close]
BLAST of mRNA_S-dermatodea_contig1009.62.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 6.190e-22
Identity = 49/83 (59.04%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:  157 VADFVPEDEYLFFASVCRGWKDAWTPRPTVTTAATAHTSVPQLLHSFQCGLPRTRAVCNALARAGNLDALRKARRRGCPWTHD 405
            +A+FV ++++LFFASV RGW+D W  RPTVT A TA TSVPQL  SF+CGL RT AVC  +A  G LD L++AR  GCPW  +
Sbjct:   31 LAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLQRARAMGCPWNEN 113
[Close]
BLAST of mRNA_S-dermatodea_contig1009.62.1 vs. uniprot
Match: D8LFW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW3_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 7.270e-19
Identity = 48/96 (50.00%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:  109 AAEDNPLETTADIVRSVADFVPEDEYLFFASVCRGWKDAWTPRPTVTTAATAHTSVPQLLHSFQCGLPRTRAVCNALARAGNLDALRKARRRGCPW 396
            AA DNPL+   DIVR +ADFV ++++LFFA V   W++AW  RPT T A T H +  QL  SF CGL +   VC A+A  G L+ L++AR   CPW
Sbjct:   27 AAVDNPLDANVDIVRCLADFVHDEQHLFFAGVSTLWREAWGRRPTSTRAITEHVTPSQLCWSFSCGLRKRAEVCEAIAGFGKLEVLKRARELKCPW 122
[Close]
BLAST of mRNA_S-dermatodea_contig1009.62.1 vs. uniprot
Match: D7FWU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU0_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.060e-18
Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:  121 NPLETTADIVRSVADFVPEDEYLFFASVCRGWKDAWTPRPTVTTAATAHTSVPQLLHSFQCGLPRTRAVCNALARAGNLDALRKARRRGCP 393
            NPL +   +V  + ++V  ++YLFFA+VCRGW  AW  RP VT AAT  TSV QL  SF CGL RT+ +C   A+ G LD L+ A   GCP
Sbjct:    7 NPLTSNKTVVNHLMEYVDHNQYLFFATVCRGWSRAWGERPAVTRAATNGTSVSQLSFSFHCGLRRTKGICETAAKLGRLDLLQCAVLNGCP 97
[Close]
BLAST of mRNA_S-dermatodea_contig1009.62.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.430e-16
Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:  118 DNPLETTADIVRSVADFVPEDEYLFFASVCRGWKDAWTPRPTVTTAATAHTSVPQLLHSFQCGLPRTRAVCNALARAGNLDALRKARRRGCPW 396
            D  L   +D+   + +FV  +++LFFA VCR WK+AW  RP  T A T  T+V QL  +FQCGL     VC ++A+ G LD L+ ARR GC W
Sbjct:    2 DAALFAQSDVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAKLGRLDLLQCARRHGCAW 94
[Close]
BLAST of mRNA_S-dermatodea_contig1009.62.1 vs. uniprot
Match: A0A6H5KEA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA5_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.440e-14
Identity = 42/63 (66.67%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:  271 SVPQLLHSFQCGLPRTRA-VCNALARAGNLDALRKARRRGCPWTHDALANAAEGGHLHVLQWA 456
            +V QL H F  GLPR R  VC ALA  GNLD L  ARR GCPW+H   A AAEGGHLHVLQWA
Sbjct:    2 TVAQLQHRFASGLPRNRVGVCTALAGTGNLDLLAAARRSGCPWSHRTAAAAAEGGHLHVLQWA 64
[Close]
BLAST of mRNA_S-dermatodea_contig1009.62.1 vs. uniprot
Match: D7FH78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH78_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.780e-13
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:  133 TTADIVRSVADFVPEDEYLFFASVCRGWKDAWTPRPTVTTAATAHTSVPQLLHSFQCGLPRTRA-VCNALARAGNLDALRKARRRGCP 393
            T  +I+  +A FVP++++LFFA V +GW+ AW  RPT+T   T  T+  QL HSF+CGLP+ +  +C ALAR G L+ L  A   GCP
Sbjct:  111 TNRNILLCLAQFVPDNQFLFFAPVAKGWRAAWQ-RPTITAHVTPDTTTSQLQHSFECGLPQNQTGLCAALARLGKLNLLACAVGAGCP 197
[Close]
BLAST of mRNA_S-dermatodea_contig1009.62.1 vs. uniprot
Match: A0A6H5JDL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL5_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.910e-6
Identity = 43/117 (36.75%), Postives = 53/117 (45.30%), Query Frame = 1 
Query:   85 TAGSNRVTAAEDNPLETTADIVRSVADFVPEDEYLFFASVCRGWKDAWTPRPTVTTAATAHTSVPQLLHSFQCGLPRTRAV-CNALARAGNLDALRKARRRGCPWTHDALANAAEGG 432
            T G +      +N   T  DIVR +A FV + ++LFFA V R W+                         F CGL R     C+  ARA NLD LR A ++G PWT    A AAEGG
Sbjct:    8 TIGGSAKRVRTENVAVTNMDIVRGLARFVADKQFLFFAPVSRSWRARGGSG-----------------RRFACGLARGGVDWCSTTARAVNLDLLRWATKQGYPWTRSLSAAAAEGG 107
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1009.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5L0J7_9PHAE4.340e-2559.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI1.860e-2358.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0K8_9PHAE6.190e-2259.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFW3_ECTSI7.270e-1950.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWU0_ECTSI3.060e-1850.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8V2_ECTSI3.430e-1646.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEA5_9PHAE2.440e-1466.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH78_ECTSI1.780e-1347.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDL5_9PHAE1.910e-636.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1009contigS-dermatodea_contig1009:6290..17655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue2.7e-12
Seed eggNOG ortholog2880.D7FJY0
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Hectar predicted targeting categoryother localisation
Exons2
Model size1269
Cds size1269
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924138.5667212-CDS-S-dermatodea_contig1009:6289..74591622924138.5667212-CDS-S-dermatodea_contig1009:6289..7459Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1009 6290..7459 -
1694079043.7357037-CDS-S-dermatodea_contig1009:6289..74591694079043.7357037-CDS-S-dermatodea_contig1009:6289..7459Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1009 6290..7459 -
1622924138.5783958-CDS-S-dermatodea_contig1009:17556..176551622924138.5783958-CDS-S-dermatodea_contig1009:17556..17655Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1009 17557..17655 -
1694079043.7523901-CDS-S-dermatodea_contig1009:17556..176551694079043.7523901-CDS-S-dermatodea_contig1009:17556..17655Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1009 17557..17655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1009.62.1prot_S-dermatodea_contig1009.62.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1009 6290..17655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1009.62.1

>prot_S-dermatodea_contig1009.62.1 ID=prot_S-dermatodea_contig1009.62.1|Name=mRNA_S-dermatodea_contig1009.62.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=423bp
PQAGRPSSGRLNDMGCSGTKEPRAEDSSTAGSNRVTAAEDNPLETTADIV
RSVADFVPEDEYLFFASVCRGWKDAWTPRPTVTTAATAHTSVPQLLHSFQ
CGLPRTRAVCNALARAGNLDALRKARRRGCPWTHDALANAAEGGHLHVLQ
WALKRGIFHSHADICSAAARGGHLDVLKWLRGHGCAWSWHTCSKAAEGGH
LAVLMWARANGCPWNAQTSAGAAKGGHLAALQWLHAVECPWDSFTCQQAA
QGGHLEILQWARANDCLWDACTCAGAARGGQLDILQWARENNCPWDWTTC
RAAASQGNLEVLRWARANGCPWNEYCCSEAAKGGHLEILTWAREQGCPWN
EMTCSGAAEGGHLEILQWAREQGCPWDASTCEGASRRGHLDILRWARGND
CPWEGWKCYFAAERHRQTHVVDW
back to top

mRNA from alignment at S-dermatodea_contig1009:6290..17655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1009.62.1 ID=mRNA_S-dermatodea_contig1009.62.1|Name=mRNA_S-dermatodea_contig1009.62.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=11366bp|location=Sequence derived from alignment at S-dermatodea_contig1009:6290..17655- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCAAGCCGGGCGGCCATCGTCGGGTCGGTTGAACGACATGGGGTGCAG
TGGCACCAAAGAGCCCCGTGCGGAAGATAGCAGCACCGCTGGATCTAATG
TGAGTTGAAGAATCAAGCTATACTGGACGACTGGCCACGGGAGGTTTATA
CACACACCCACCGGTTCGTGTGTTCCGTGCTCTTGCTTCTCTACACGTAC
AAAATGTATGATATGATATCACATGATCAGATATGTATGTGTTGACGTGT
TGAATTCAGCCCCAACATGACACATACCATACACAATTGTACGATAGGTG
AAGCGAGCTTCAAGTATTTACAGACAGCAGTTGTGTATGTGTATGTAGAG
CTCTACTTGCATAGATAATATGCCCGTTCAGCGGACGCTATTTTAGGCGA
GAAGGCCGATCATGCTCGAACAGAGGTATGGTACCAATTGGGCAAGAGCG
CGTGAAGGATGTCCGAGGAAGAACGCTATGCCTGGCAACGTGGCAGGCCA
GGACGGCGCCGTGCCCGATGACTCGCGTCGGTGCCCGCAGTAAATAATTA
GTCATAAGTCATGTATGTTGATGGCGGCATTGCATATGGGCGGGTTGAAA
CCTTTTTGATTTCTCCGCACATAAATCCGGTACGACCCCCATGTTGCTCA
CATTTACAGCAGCAGCAAGCAGCTCGTGCTCCGGCTGGCATTAATCGTCC
ACACATCCATCCATGGGATCAAACGCTCAGGAGTGGAATTCTCCACCAGG
TTTTCGCGGCGTTCATACTATAATAACGAACTGCTATATGTATTAAATGT
AGACTCTTCTTTGCCCAGCAGGTCCACAGCAGCAGCAGTTATAGGAGACC
TCAGCAGTATGTCAATTTGATACATGTATACTTGTAATTGTATTTGTTCT
CTCTGTTAAGTGTAGGTACTTGCTGTTACCATATCATACATAAAGGTATG
TATATAGAGCTACACAAGCCAACACTTTACCTCGCACTTATGCCTTACTG
AGAGAGAAAATGACGTACTGTACCTACTCTCGGTTTTTTCCCCTGGAGTG
TGCCCGTGAGTTAGGGATGTACAGGTGAACTAGATTATGTATTTTAAAAG
ACAACACTTTATCACACACCTGTATCGTGTACGAGTAGAGTTTTGTTTGT
GCAGGCTTGGTCGTTGACGTGTCCACCCTTCGGTCATTTCTGTCTCGAGA
GCCAGCCCGCTGAGTCAAACGTATGCATGCAAACAATCCCATCCTGCTCG
ACCAGAGCAGCAGTGGATGAGTACGATCCTGGGTTATACTACCAATAGTC
CAGCTCCACCAAGTGTCCTGTGAGTGGTCGCAACAAGTGCTGCAGAACCA
CCGGAACCCGTATAGAGCGTTTGTCTTGTACGCTACCTGGTACGTACGTG
CAGTATATAAATATAAAGTACTGTCTGTATATAGATTGATCAGTTCGTGG
GACCGGCTGGATTAGGGTTTTCTCGAGTTTTCGAACCCCTCAGGATCAAT
TGCTCAGCCGCATGTATGCCATTCATGTCTTTTTGGACATGCTTTGACTC
CACTGTACTCTGTCGTACAAGTATCCGTCAACCTGTGTTGCACAAGTACA
TTTTTGGAAGGCTTTATCATAAAACGGGGATGCTTCACGAGACGCGGCCT
AACCCGAGGAGCGCAGCTGGCAGCAAGTCGTCCAGATAATGTGCTGTGCT
GCAGTGGCGGCGCGCCGAGAGACCCCCGTTGCGAAAACATCACACGTCAT
GGTTTCAGGTTGTCTCTGGGAGGCGATAGCCCAAACAGGCTTTGGCGCGA
CGGCTCGATGGAGAAAATATCGCGCGCCGGTGAAGAGGATGCCCCCTGTA
GCGTGGTGAATACTCCCGACCCCCCGCGATTTGGGGATCGCCATCACAGC
GCGAGCTAGACAGAATTTCGACGTCTCCCGAGGATAGCTATCCCCGCGGT
CCGAGGCACTCTGAGACTATATAAAAACAAAGTCTAGTTCTCATGTACAT
CCCTAACTCACGAGCACACTGGTTCAGGGGAAACTGAACGTAGGACGTCC
TTTACTCTCTCAGTAAGGCATATGTATATCTGGGGGGACTATAAATGTAC
AGGTGGACTATTTACCAAGATACTTTACTTCTGTATTACGCCGCGTTTTT
TGCTGACCCAGCCGTTTTACTTGTTTCGTTTTTTATTTTATTTTTTCCTG
CTGTGTCTCTCACACATCACACACAGCAACCACAACAGCGCTGCTGTCGA
GGCGCTTGATATTGTTTTCTGCTGTGTCTTGACAAGCACGCGGCCACAGC
AGCCGCAGCGCTGCTGTCGCGGCGGCGACACAGCACTACTCTCGATCCAT
CTCCCCTTGCTGTTGTAGGTCCGATTGCATAGCCGAAGCACCCAGCAGGC
CAGCAGCAGCAGGCAGCAATTTCCCGGATCCCGTACTGTAGTCTTAACGC
CTTGCGGTCTTACTGAAATGAACGTTGGCATGCCTTGGCGCGACGGTGAG
ATGGGGCTCTAATCTCGCGCCCGTGGTGCGGGATACTCCCCTTTAGTGTG
GTGAACACACTCCACCCCCCGCGATGTTGGGATCGCCGTCACAGCGCGAC
TCCATTTCCGACAGGAAATTACGCAGCAAGGGGACACCGACATCGGATAT
TTTTTCGTAATATCTTTATTTTTCTCGTCTTTATCATAGTATATAGGGGT
CGTGCAACACAGCCTGTGGTTCCGTTTTTTTTTTTTTCAAATCCTTTCTT
TTTCCGCCTGTATTAGCGGATGAAGCCGTGTTTTTTCGGGAATAACGGGC
TCAGGGGCTGGGTCACACCGGTAACAGTAAAACTGTCATGTGTGATCACA
CGCATAGAGACAGGGTGGATGCCAGCAATACGCGTGAGAGGCAAGGAAGA
AGTTCAATGACCACCGACAACCACAACCCGACAAGCGATACCTTCAGCCA
TACCATGCAGTACAGTAGTACAACTACAACTGTAGTATACGAGTACTACT
ATCATATCATACTGATATTCAATACTGTATTGCTGTAGATCCGGCGAAAG
AGAAGATTTGAAATCGCGCACAACCGCGACAACTTCAACTTGGAAGCTCT
TAGGTGCTGCCCAGCCCACACACCTACACCCCACACGTACGCGTGGGCCC
CACAGCTCCTCACAACTGGCTGTACAAACAGTATCAAACTGTATTAATAG
TAAAACCACAGCTGTAGCAGGCGGTGCCGCGCTAACGGACATACAATACA
TCAGAACAACAACATGACAACTTGCTCGAGTGTTGTAGCGGCCAAAATCG
CCTATCTGTACCATATCACACATATACACCTCGTATTAATAGTACTTTTG
CCGTGCCTACACTGCTGTACAGTATTTACCGACCTATACTCGTGTACCGA
CTCCATACGCATGCCATATATATCATATGAGGCCTTTGGGAAGAGACCCT
TAAAAGACCCCCAAGGTGTCATTTAAACAAAAGTACGAGACGCAGAGGAA
CACCTGGCCAAGAGCGGGCAGTCTTGGCACGACTACAGGTATGATAATAT
CATATGATATGATATGATATTAAATACATACTACAGTTGTACGATATGAT
TCAAACATTAACACTAATCAGAAACAAAATTCGGGCGTCTTTCGGGCCTT
ACCCAAAAGCCCCGACCTCCCGGCCCCTTGAAAGCGAGGCACGACGGCTG
CGGTGGCATGTATGTGAAGTGGCATAAATGGAGGCACTAAAGCCTGCGCG
TGCAAGTAGGTCGGTTATATAGTCGAGGCATGGACGAAAAGGTCCAAGCT
CTACGTCCGCGACAGGCCGTGGTGACACGGGCGTGCGTAAACGCGCATCG
CAAAGACCAGAGAGCCTGCCAATTGTATGATAGCAACGGCTTCTTCCGAA
ACGGATAAGCCCTGCTTTCAGGCGAGGCGGCTGTAGGGCTCTAGGAAGAT
TCAAATCGACACTTATGCAAATAACAGAGAATAACGTAAACCGTTTTCGT
CAAGGCGGCCCAGATAAACGTTGTTGCTGTGAAGGAGTCGGAAGCCGAGC
TCTGAACGCACGTGAAAACAGCATGCCTGAAGTTGGAAATAATCGAGCAG
TACGTGGGGACTCAAATTTAGGACTTATTAGTCCACGCCGCTATTTTGTA
TATATCTCCCCTTTTTTTATCGGTGCCCCACCGACGAGACAACCCAATAG
TAGCACAACATACTATTTCCACGATTGCCAGCGACGTACAGGGTGAACCG
CGCTTGGCTCCAGCTCGAATTGGTGTTATGAAATTGAGGAGTTCGTGTGA
TCTCCTTCCACTCCGGGTGAGGATCGGCGCTGATCCGCTCGCGACTCCCG
GTCAACCAGCAATTTTACACTTTTTCGAGGCTTTGGCTGCGTATCAGGTA
TTTCCCTCAAGGGCTTGAGGTTCTCGAGTTCTCATTGCGAATCGGCTTTT
GAATTAGCAGTTTATCGGTCACAGCAGTAGTCGGGAACGACTATTATTCT
TAACGTGGGCAACTCCGCAGTTGGGCTACGCCACCGAAATAATACGAAGC
AAGAATCGGCGATTAAAAAGTAGACGTATTTTTTCGGGTCTCCGTGCACA
CGGCTACTTTTTTCACCCCCGTTTGAGCCGAGAAATGGTGCGATCGGGGG
GTGTTTGGAGAGCCGAGGACATGGTCGATGCGTTGCATTAGACAAAATCG
TAGTTCCGAGATTTTAGGCGACCCGCGCGGCGCCGAACAAGTCGAAATGG
GCCGACATGGTCTCCTGGCCGCGCTGATACAAGTATTGTATAATAGTATC
ACGCAACGCACGGAGCCTCCGGTACCGCCGGATCGAGTGGGGAGGCCTAT
GTGATAACAAGCCCATCTTAGCTTTCGGGGGATTTTGTATGGACGGCTTT
TGCATGCGCGATAAGCTTTACTGTTTTCCTTGTTCTTGTTGCACTTCCGA
CCGACCGGCCTTGTCTGAAGGCGTCTTGTGATCACACGGGATCTCATCCC
TCCCCAGAAGGGTACACATACGTTCCTTCCTTTCTGATCGCGCGCGGAGG
TCGGCGCTCCCTCCTCTCGCAGTACTTACTCACGCCGTCGCATTAGCCGC
GGGCAGGACGGAGAAAACAGAATGGCCTCAGTCTGAGGTTGAACCCGGAA
CCTTCGCCACTAGTATAGTGCCACGACAACACACTGCAATTGCACCGTAT
GTTGGGAGGAACGCTGAAGGGAGGTCGAAAGAGCGTTAGACCGAGTACAA
TGAAGGCTCGAATGGCGCGCTGAGCGAGCCGTGAGCAACCCCTCTACTAC
GATGAGCGATCGTACGCAAAGCCAGTGACCTGGGCCCAGGTGTCAAGGAG
CATGATAAGTGCAGGTGGCGGAAGAACGGTGGAAATTACCGGTTTTTATG
AAAGGCACACCCTCCTCTACTAAATTACTCATGATAATGGAGTCCCACCG
CCGGTTGATCGAGAAAAGCTTAACTTGTCCAAACACACTGTGACAGGCAT
TTGGTGGCTCCCTTTAAAAAAAAACTTGGCAAGGGTTGTACGTTCAAGGT
ATTTTTCGCTTTGCCAAAAAAGAAGGTGCGCAATATTTTGAGACCGCGAC
ATTATGGTGGGCCTGTCGATGGGTTGTCGGGAGTCTTGTTGGGTCCCAGC
CGGTGGCCCTGCTTTTAGACGCGCGTCGCCTTGTTACATTTTGAGCAATG
AGAGGCTACGCTCGGCCCAGCGCCAGGAAGGTACTATTCGAGCGAAGCGA
AATGTCAACATAGTCAGTTCTATCGCACTCTCATGGCACTCAAATGGGTG
TAACTGGCATCTCCGTGGGCAGCCGGACGATGTTCAGGGAGGCGGTGGCG
TCGATGTGCCCGGGCACAAACTCACCTGATGAGGTATTGCCGAGACCTTG
ACAGGGTATTCCACGCCTCGCTGCAGCACTATTTATCAATTTATAGAGCG
CGCTTCGAAAACACGCCCCTGCTGTCTTGCGCAAAAGTTGTGAGTCTCCG
TGCCCGGGTGATTGATTCGGGGCGGGAGCTTGTCATGCCGCCGCGCGGTA
TATCCTACCAGGGAAGTCGTATCGTGTCCGAATTGCTGTGTTACGTATTG
GTACTCCTACGCGTACCCCTGCAGTATCAAGTCACAGCGGTTCTTCCACC
TGCTGCTTGTTTCCCAGGTATCTAGCCTCGTAGAGCTGTACATATGCACC
GGTTTTGTGTCGGTGCCACAGTACTGCTCCGTCACTTTGACACATTCTGC
TTTCTTAAAACGTGTCAAATGGCCTCCTTGTGAGCCCTGTTACATTACCG
CTCCCCCAGAACGTACTATTAATATGTTGTGTACACGATGGGGGCTTCCT
CGACCATGATAGTTTGCGGCATTTGATGCTATGATAGCATGAGCACAAGC
TGCTGCTAGGCGACATCTGTGCTCTGGAATCGCGTCAATTAGAGCTCTAT
TTTCGGGCGGATATTCTTCACACTGCTTCCCGGGCATTACCTCTCGAGGA
CACGCCCACATGCTGACGTGATTGGTCATAAGTCGTTCCTCTGGCTCTGC
GCCCATGGACAGTTCTGGAAGGAGCGGAGCGCTCATGCAAAATGTTTCTC
CTGTACTCTGAAACGGTGGCTTGGTTTTGGGCACACGTTTTCTCGCGTAT
CCAAACCAAGGCGCAAATCTGGGCTCTTTGCAAATAATTACCGTGAGCGA
GACCCGAAGACCTTGCATATTAGTTCCTCCTTGAAACGTGGTTGACGATT
TGAAGGCAGCAGTCCCCATGTATTACTGTTACTGCCCACACCCGTATGAT
TCCATAACTGTCACTATTGATAAGGTCTTGTGCGATTACACTATAATATC
ATATCATACCATCTTGGTCAATTTTTTGTGGCCAAATCTGCCGGTGGTAT
ATATCATATTATATGATTTCATACTATGATAAGGTCTCGTATGATCTGCA
AACCGGAACCGGCGCCCCCCCGATCGTGCCCAACGAAGCGTAACAAGTTC
AACTTGCTTTCGCGCAATCTCCGTGGAAATGCGGCGTTCCTTTGCCATGG
TTAAATTTGAACTTTGTACAATATGTTCTGGTGGCCATGCAAGGTGGGCT
GCGGGCGTCTGCAGAATGTTTAGCTCGGATTGAGCATACCCTCGTGTTGG
TCTTAGGAGCCCGATCCAGCCCGCCGCCCGCCGCCCGGTGCAAGAGTGAA
ATGTTGGCGTATCTTCTGTACTCGGATTTAGACTGAGTGTAGAATGCATA
TTAAGCCAGGTGCGGATCGAGGGGAGATGAGATTAACCCTGAGACCATGG
ACTGGTGCAAAGAAGGTGGCTCAGCGCTGGAGCACGGATATGTTGTGGCG
CGTATAGGTTGCGTGCCCGTCGCACGGGCCACCTATGCACCTATGGACAC
TTCGTACTCGGGGCCATTGTCGTGGAATCGCCACTTTTCCGCTAAATTGT
GTACCTTGAGCGTGTCTTACCCGAAAAATCGATACTTTTCTTGCACGAGG
GTATTGCGACACATCTTGTCTGCGGACCGCGATAAGCGCTTCCTCGGAGC
CGTTCAGCCAATGGCAGGCTTGCACGGCGGTATGATGGCCCAACAACGGG
TCTGTGGTAGTTCAGCCTTAAGCAGCAACCGTTACCAACAGCAACCTTTG
CCGCCACTTGCGGAGCTTAGCAAACAGGAACGAGGACCTTTTCGAGAGCG
TTCAGGAATGGATCCGTCATGGCATCGGCCACTGGACCGAAAGCCTGGTC
CCACTGCCTGTCATCCATTGTCATCGTCGTGCTACTGGGGTGTTTCTAGT
CGCTCTCGGAGTTGCACCTCCTCAGGTCTGCAGCCCTCGCCTTTGCAATG
CGACCTGAACGCGGTCGGGATGGTATCGAAGCGTGGAGTTAGCAGTATAT
ATAAATCGCATGAACTCCTTGAAACAGTTGCATTTAACGAACGGTTCGCA
TTTATAAAACAGTTGGGCTCGATATAGACTGCTATTGGATGAAGCCAAGG
CGTGGCGCTGGTTGCGGCATATCGAATGACGAGCCAGTCGTTCACGTGAA
AAGCCCAGTTGAAAACGGCAAATACAACGTCACATGGCCGAATCAATGAC
CCGACCTAAATACAACACAAACTGAGCCACTACCGCGTTACATATTAAAG
TTTACAGTTACCACGTGACCGAGCCGCATCGCCGCTTTGTATCAAGCCAC
ATAAACATGTGTAATATACATGTGTAATCTATGTATTTCCCGGTCGCGAG
AGAAATCCTTGGAGAAATGCGGGGTTCTGCTTTGGGGGCCGCCTGCACTC
CAGCCCCGCTTTGCGGTTGCCTGGCCACTCGTGTTTGCTATCGTTTTCCC
GCATCCTCGCAGTGATGATCAAAGTAGGACCAGCGCCATTCTGGTGTTGC
CGTCGCCGTTGACGCTGTAACAATGGTGGACAAACCCAAAACAAAAGCAG
ATTATAGAGGTCGACGACGGGAATAACCACGCCCTCAAATATACCCCATG
CAAAGTGTACATGTGGTTGAGAAGTTCCCAGTCGTCGGAGACGTGACATA
TCATAAATAGAAACATCGCTTGCGCTTACCCTGCGATCGTGGATGTTCTT
AAGGCGATTGCGGGTTTGGCTTTGATCTGTCTTGCGGCCAGGGGTTCAGC
AGAAAATGAAGAGTCGTTGCCCACTCTCAACGCCCCCCCCCCCCGCCTCA
TCATCTTCAAGCTGCGAGAAGGAGTACTACCGTAGACTACGAAGGCCTCG
TGATGGAATGCTGATTCCCAGCGCACGGGTTGGGGCAGGGCAAAGAAGAA
CGTGTCTTTCTATCGGGCTTGGTCAAAAACAGCTCCTCGCCAGCAGAAGC
ATGCCCGTGTTCTCTGCTACTCGGATGACGTCGCTCGACGAGGGTAACGC
ATCACAACGGGATAGTGTGACGACGATTGCGGAAAGTGGAAAATAGCGGT
TGGACTAGCAGGCTGGGGCGGGAACGGTGCTTTGCCCCCCCTCCTGGTGG
CGCAGTTCCCCAAATGGGGTGCCCAAACAAGTAGATCGTCAGCTACCTTT
TTACCCCCAGCTCACTTGTCGGTTTAATCTCTCTGTGTTGCAAAAGGCGC
GCTGGTAAGCACCGACTCAAATCTGGCAAAACACTCATTTTTCACATAGT
TCTCCACCCCGCGATCAAGGTCAAAACATCAAGAAGTTTTCAAAGGCGAC
ACTAAACAAGCACTTCCTTCGCCAGAGCTGTTGTGTGTAAGGTGGCGAAA
TAGCATTGCGAGTGATATTGGATGCTCGGGAGTCGTGTCACCAGTTGGAA
GACCGTTGTTCTCTTTCAACGCCACCATATACCAAAACAAGGGTCCATTT
TACGCACAAGGAGCACCAGTCTATACGACGGCCAATCGTGTTCAACGTTG
AAGCTTCTCCGCTTGGATGGGGTCTTGTTCTGCTCTGTTGCTTCATGCAC
AGCCCCATGTCCTTCCCCGTCTACGGACATAGAGTCCAAAACAGAGACAA
CTGAGTTTCCCCACAAATCTCAACTGTTCCACGTCATACCTCAGTGGCCT
CGATTAGCCAGTGCGTCAAAGCAACTGCCTCCGGTCACACAGTTTGGTAA
TCCAAAGCGCTCGCCTTGCGGTGTGAAACCGTGCGTAGGATGATCAATGC
ACATTTGAGGCGCCTCATCACCGGTTTGAGTGGTACGTCATGAAAATAAA
ACGAAAACATACCTAGAGACGTCTCAAAACAGGTACCGTATGTAAATATG
AAACTGTAGAGGATCCTATCCTCCGGCCTGAAGGGCGTTGCACCTCTTAA
GTATTTTAGCACTTGTCGTGGCAAATACTGATAATTCAAACTCGCACTTA
GTCGTTTCACGCTCAGACGTCATGTCTCTGCGGCACTCTTAAATTTTTAC
GTGGCAGTCTGTAGGCAATGCATATGATCATCGTACGTTCAGGTATCCTT
TTATGGGGAAGGTTGTCGCGTGGGAGCGGATACTCTGTCCCCAGGTACCC
CAGGCAAGAACACTCGGTCGGCCTAGTGCCTCGGAAACTTATAGCAAAAC
CCCGTGCCCAAACACACTCGCCGAAGCGCTGGGTGCTAACATGAGCGTCT
GTACAAACGCCAAATACGTTTATTCCAACTGTTCGCCAAACGCCCAATCG
CGACCCCTCTCTCCATTTCGACGCAACCCACCCCAAACACACGCAGCGAG
TCACCGCGGCTGAGGACAATCCTTTGGAGACGACGGCAGATATCGTCAGG
TCTGTGGCGGATTTCGTGCCCGAAGACGAGTACCTTTTCTTCGCGTCGGT
GTGCAGGGGCTGGAAAGACGCATGGACACCACGCCCGACCGTAACCACGG
CAGCCACGGCCCATACCTCCGTTCCGCAGCTGCTGCACAGCTTCCAGTGC
GGCTTGCCGCGAACCAGGGCAGTCTGCAACGCCCTCGCGCGCGCCGGGAA
TCTGGACGCCCTCAGAAAGGCGCGGCGACGCGGCTGCCCTTGGACCCATG
ATGCCCTCGCCAACGCCGCCGAGGGAGGCCACCTGCACGTCCTTCAGTGG
GCGCTAAAAAGGGGTATCTTCCATAGCCACGCTGACATTTGCTCGGCGGC
AGCCAGGGGAGGCCACCTAGATGTCCTGAAGTGGCTGAGGGGGCACGGTT
GTGCATGGAGCTGGCACACGTGCAGTAAAGCGGCCGAGGGAGGTCACCTC
GCCGTTCTCATGTGGGCGCGAGCAAACGGCTGCCCCTGGAACGCCCAGAC
CAGCGCCGGGGCCGCAAAGGGAGGCCACCTGGCTGCACTTCAGTGGCTCC
ATGCAGTTGAATGCCCGTGGGATTCTTTCACCTGCCAACAGGCTGCCCAA
GGAGGTCACCTTGAAATCTTGCAGTGGGCAAGAGCGAACGACTGCCTTTG
GGATGCGTGTACATGTGCAGGGGCTGCTCGCGGGGGGCAGTTGGACATCC
TTCAATGGGCAAGGGAGAACAACTGCCCCTGGGATTGGACAACTTGCCGA
GCAGCAGCTTCGCAAGGGAATCTAGAGGTCCTTCGTTGGGCCAGAGCAAA
CGGCTGTCCGTGGAACGAATATTGCTGTTCTGAGGCCGCCAAGGGGGGAC
ACTTGGAAATTCTGACGTGGGCCAGGGAGCAAGGCTGCCCATGGAACGAA
ATGACGTGCAGCGGAGCGGCGGAGGGGGGTCACTTGGAAATTCTGCAGTG
GGCGCGGGAGCAGGGGTGTCCTTGGGATGCGAGCACCTGTGAAGGGGCTT
CCCGGCGGGGACACCTGGACATTCTTCGATGGGCTAGGGGGAATGACTGC
CCGTGGGAAGGATGGAAGTGTTACTTCGCCGCCGAAAGGCACAGGCAGAC
CCATGTGGTTGACTGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1009:6290..17655-

>mRNA_S-dermatodea_contig1009.62.1 ID=mRNA_S-dermatodea_contig1009.62.1|Name=mRNA_S-dermatodea_contig1009.62.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2538bp|location=Sequence derived from alignment at S-dermatodea_contig1009:6290..17655- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCAAGCCGGGCGGCCATCGTCGGGTCGGTTGAACGACATGGGGTGCAG
TGGCACCAAAGAGCCCCGTGCGGAAGATAGCAGCACCGCTGGATCTAATC
CTCAAGCCGGGCGGCCATCGTCGGGTCGGTTGAACGACATGGGGTGCAGT
GGCACCAAAGAGCCCCGTGCGGAAGATAGCAGCACCGCTGGATCTAATCG
AGTCACCGCGGCTGAGGACAATCCTTTGGAGACGACGGCAGATATCGTCA
GGTCTGTGGCGGATTTCGTGCCCGAAGACGAGTACCTTTTCTTCGCGTCG
GTGTGCAGGGGCTGGAAAGACGCATGGACACCACGCCCGACCGTAACCAC
GGCAGCCACGGCCCATACCTCCGTTCCGCAGCTGCTGCACAGCTTCCAGT
GCGGCTTGCCGCGAACCAGGGCAGTCTGCAACGCCCTCGCGCGCGCCGGG
AATCTGGACGCCCTCAGAAAGGCGCGGCGACGCGGCTGCCCTTGGACCCA
TGATGCCCTCGCCAACGCCGCCGAGGGAGGCCACCTGCACGTCCTTCAGT
GGGCGCTAAAAAGGGGTATCTTCCATAGCCACGCTGACATTTGCTCGGCG
GCAGCCAGGGGAGGCCACCTAGATGTCCTGAAGTGGCTGAGGGGGCACGG
TTGTGCATGGAGCTGGCACACGTGCAGTAAAGCGGCCGAGGGAGGTCACC
TCGCCGTTCTCATGTGGGCGCGAGCAAACGGCTGCCCCTGGAACGCCCAG
ACCAGCGCCGGGGCCGCAAAGGGAGGCCACCTGGCTGCACTTCAGTGGCT
CCATGCAGTTGAATGCCCGTGGGATTCTTTCACCTGCCAACAGGCTGCCC
AAGGAGGTCACCTTGAAATCTTGCAGTGGGCAAGAGCGAACGACTGCCTT
TGGGATGCGTGTACATGTGCAGGGGCTGCTCGCGGGGGGCAGTTGGACAT
CCTTCAATGGGCAAGGGAGAACAACTGCCCCTGGGATTGGACAACTTGCC
GAGCAGCAGCTTCGCAAGGGAATCTAGAGGTCCTTCGTTGGGCCAGAGCA
AACGGCTGTCCGTGGAACGAATATTGCTGTTCTGAGGCCGCCAAGGGGGG
ACACTTGGAAATTCTGACGTGGGCCAGGGAGCAAGGCTGCCCATGGAACG
AAATGACGTGCAGCGGAGCGGCGGAGGGGGGTCACTTGGAAATTCTGCAG
TGGGCGCGGGAGCAGGGGTGTCCTTGGGATGCGAGCACCTGTGAAGGGGC
TTCCCGGCGGGGACACCTGGACATTCTTCGATGGGCTAGGGGGAATGACT
GCCCGTGGGAAGGATGGAAGTGTTACTTCGCCGCCGAAAGGCACAGGCAG
ACCCATGTGGTTGACTGGCGAGTCACCGCGGCTGAGGACAATCCTTTGGA
GACGACGGCAGATATCGTCAGGTCTGTGGCGGATTTCGTGCCCGAAGACG
AGTACCTTTTCTTCGCGTCGGTGTGCAGGGGCTGGAAAGACGCATGGACA
CCACGCCCGACCGTAACCACGGCAGCCACGGCCCATACCTCCGTTCCGCA
GCTGCTGCACAGCTTCCAGTGCGGCTTGCCGCGAACCAGGGCAGTCTGCA
ACGCCCTCGCGCGCGCCGGGAATCTGGACGCCCTCAGAAAGGCGCGGCGA
CGCGGCTGCCCTTGGACCCATGATGCCCTCGCCAACGCCGCCGAGGGAGG
CCACCTGCACGTCCTTCAGTGGGCGCTAAAAAGGGGTATCTTCCATAGCC
ACGCTGACATTTGCTCGGCGGCAGCCAGGGGAGGCCACCTAGATGTCCTG
AAGTGGCTGAGGGGGCACGGTTGTGCATGGAGCTGGCACACGTGCAGTAA
AGCGGCCGAGGGAGGTCACCTCGCCGTTCTCATGTGGGCGCGAGCAAACG
GCTGCCCCTGGAACGCCCAGACCAGCGCCGGGGCCGCAAAGGGAGGCCAC
CTGGCTGCACTTCAGTGGCTCCATGCAGTTGAATGCCCGTGGGATTCTTT
CACCTGCCAACAGGCTGCCCAAGGAGGTCACCTTGAAATCTTGCAGTGGG
CAAGAGCGAACGACTGCCTTTGGGATGCGTGTACATGTGCAGGGGCTGCT
CGCGGGGGGCAGTTGGACATCCTTCAATGGGCAAGGGAGAACAACTGCCC
CTGGGATTGGACAACTTGCCGAGCAGCAGCTTCGCAAGGGAATCTAGAGG
TCCTTCGTTGGGCCAGAGCAAACGGCTGTCCGTGGAACGAATATTGCTGT
TCTGAGGCCGCCAAGGGGGGACACTTGGAAATTCTGACGTGGGCCAGGGA
GCAAGGCTGCCCATGGAACGAAATGACGTGCAGCGGAGCGGCGGAGGGGG
GTCACTTGGAAATTCTGCAGTGGGCGCGGGAGCAGGGGTGTCCTTGGGAT
GCGAGCACCTGTGAAGGGGCTTCCCGGCGGGGACACCTGGACATTCTTCG
ATGGGCTAGGGGGAATGACTGCCCGTGGGAAGGATGGAAGTGTTACTTCG
CCGCCGAAAGGCACAGGCAGACCCATGTGGTTGACTGG
back to top