mRNA_S-dermatodea_contig10089.61.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig10089.61.1 vs. uniprot
Match: A0A6H5LCB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCB0_9PHAE) HSP 1 Score: 442 bits (1138), Expect = 5.970e-145 Identity = 238/410 (58.05%), Postives = 278/410 (67.80%), Query Frame = 1
Query: 1 VGEGFSPKYESSRERLVVVRGVERCVAEFCLVWSTARLLEACAPPETKKDFVFHLRALLEHAPARDRHEAVLVLCRGLFTPGHNDAASRTQDNVHGAALRSQEGDS-LAEAFAEVQRGAAESPGGLRAARQAFPFLEMLARWAWRCKTPEVTKS------KPSTKTFGKKKKGKLGGQDSQAGSSIAEDTGPGALKAVPLVRTRSDKTPEETGGKLSRGRHNAGVASLLVALATADPSGSSIRSMQRWACDAILPDEMAASPSDTMVDRNEVARGIICTHEVFVTGQKRDRLRWMKACREVGELIRLLVEAMDEGQMGGKDVASMVNHAMFVTTFLRSMPQGVAARRGYEQLVAAGRVPGDTKGMAANDAAHRVRNWHEAAKVLDSGIATVLKVPEARARMNGEVFRRLL 1209
V +GF PK+ESS E+LVV+RGVERC+AEF LVWSTARLLE CAPP+TK+DF+FHLR LLEHAPARDRHE+VLVLCRGLFTPGHN SR DNVHG ALR + G L EAF+EVQRGA E+PGGLRAARQAFPF+EML RWAWRCK E ++ K TK+FGKK R R + GVASLLV LA ADPSG++IRSMQRWAC+AILP++ VARGIICTHE+FV+GQK R RW KACREVG++IRLLV AMDE + G DV SMVNHA+FVT FLRSMP GV AR+GYE LVA GR PG KG+ + RV +W EAA +LDSG+A+VL+VP+AR+ + F + L
Sbjct: 124 VAQGFVPKFESSYEKLVVIRGVERCLAEFTLVWSTARLLETCAPPKTKRDFLFHLRPLLEHAPARDRHESVLVLCRGLFTPGHNKEPSRVHDNVHGVALRQEHGGCPLEEAFSEVQRGAVETPGGLRAARQAFPFVEMLTRWAWRCKLSEEEEAFAGKRKKSVTKSFGKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSREDTGVASLLVELAKADPSGATIRSMQRWACEAILPEQ--------------VARGIICTHEIFVSGQKVQRQRWAKACREVGQVIRLLVGAMDEENLRGDDVTSMVNHALFVTAFLRSMPLGVKARKGYELLVAGGRTPGAVKGLELKQVSTRVASWREAALILDSGLASVLQVPQARSDAKSDAFGQAL 519
BLAST of mRNA_S-dermatodea_contig10089.61.1 vs. uniprot
Match: D7FXL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL8_ECTSI) HSP 1 Score: 389 bits (1000), Expect = 1.920e-124 Identity = 222/416 (53.37%), Postives = 267/416 (64.18%), Query Frame = 1
Query: 1 VGEGFSPKYESSRERLVVVRGVERCVAEFCLVWSTARLLEACAPPETKKDFVFHLRALLEHAPARDRHEAVLVLCRGLFTPGHNDAASRTQDNVHGAALRSQEGDS-LAEAFAEVQRGAAESPGGLRAARQAFPFLEMLARWAWRCKTPEVTKS------KPSTKTFGKKKKGKLGGQDSQAGSSIAEDTGPGALKAVPLVRTRSDKTPEETGGKLSRGRHNAGVASLLVALATADPSGSSIRSMQRWACDAILPDEMAASPSDTMVDRNEVA----RGIICTHEVFVTGQKRDRLRWMKACREVGELIRLLVEAMDEGQMGGKDVASMVNHAMFVTTFLRSMPQGVAARRGYEQLVAAGRVPGDTKGMAANDAAHRVRNWHEAAKVLDSGIATVLKVPEARARMN--GEVFRRLL 1209
V +G PK+ESS E+LVV+RGVERC+AEF LVWSTARLLE CAPPETK+DF+FHLR LLE+APARDRHE+VLVLCRGLFTPGHN SR DNVHG ALR + G L EAF+EVQRGA E+PGGLRAARQAFPFLEML RWAWRCK E ++ K TK+FGK G R R + GVASLLV LA ADPSG++IRSMQRWAC+AILP+++ ++ R + G++ + KACREVG++IRLLV AMDE + G DV SMVNHA+FVT FLRSMP GV AR+GYE LVA GR PG KG+ + RV +W EAA +LDSG+A+VL+VP++ A+ + G+ LL
Sbjct: 103 VAQGLVPKFESSYEKLVVIRGVERCLAEFSLVWSTARLLETCAPPETKRDFLFHLRPLLEYAPARDRHESVLVLCRGLFTPGHNKEPSRVHDNVHGVALRQEHGGCPLEEAFSEVQRGAVETPGGLRAARQAFPFLEMLTRWAWRCKLSEEEEAFAGKRKKSVTKSFGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSG--GRSREDTGVASLLVELAKADPSGATIRSMQRWACEAILPEQVWEK---RLLKRRRTGMRWREASSARTKSSSPGRRSNGSAGPKACREVGQVIRLLVGAMDEENLRGDDVTSMVNHALFVTAFLRSMPLGVKARKGYELLVAGGRTPGAVKGLELKQVSTRVASWREAALILDSGLASVLQVPQSDAKSDAFGQALSTLL 513
BLAST of mRNA_S-dermatodea_contig10089.61.1 vs. uniprot
Match: D7FN50_ECTSI (Death domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN50_ECTSI) HSP 1 Score: 365 bits (936), Expect = 1.270e-116 Identity = 201/415 (48.43%), Postives = 268/415 (64.58%), Query Frame = 1
Query: 1 VGEGFSPKYESSRERLVVVRGVERCVAEFCLVWSTARLLEACAPPETKKDFVFHLRALLEHAPARDRHEAVLVLCRGLFTPGHNDAASRTQDNVHGAALRSQEG-DSLAEAFAEVQRGAAESPGGLRAARQAFPFLEMLARWAWRCKTPEVTKSKPSTKTFGKKKKGKLGGQDSQAGSSIAEDTGPGALKAVPLVRTRSDKTPEETGGKLSRGRHNAGVASLLVALATADPSGSSIRSMQRWACDAILPDEMAASP---SDTMVDRNEVARGIICTHEVFVTGQKRDRLRWMKACREVGELIRLLVEAMDEGQMGGKDVASMVNHAMFVTTFLRSMPQGVAARRGYEQLVAAGRVPGDTKGMAANDAAH-RVRNWHEAAKVLDSGIATVLKVPEARARMNGEVFRRLLC---RSW 1221
+ P Y+ +RER +RGVERC++EFC+VWSTARLL++ A TK DFVFHL+ LLEH ARDRHEAVLVLCRG+FTP ++ S+ + +V A + + G SLA AFAEVQ G+AE P LRAARQAFPFLE L RW+WRC+TPE + ST G+ G + D++AG E G+ RGR N GVASLLVALA ADPSG +I+SM RWA + ++P+++ +P + T+ DRNEVAR ++ T E+F + L WM+ACRE G+++ LLV +D+ + G+D+ VNHAMFVTTFLRSMP+G ARRGYE+L+ +GRVPG+ +A + RV +W EAA+V+D G+A+VL+V E + R E FR+ L R+W
Sbjct: 58 IARDILPSYDCTRERAAAIRGVERCLSEFCIVWSTARLLDSHAESATKSDFVFHLKPLLEHTAARDRHEAVLVLCRGIFTPQNDVVESKWEHHVFAAVFQPKSGGSSLASAFAEVQEGSAEHPRALRAARQAFPFLEPLTRWSWRCRTPETS----STDNDGETGTGDVNEDDTKAG--------------------------REGSGRRKRGRDNTGVASLLVALAKADPSGETIKSMMRWAIEGLMPEQVGEAPWSATGTLADRNEVARCLMSTREMFSDCRDARHLSWMRACREAGDVLSLLVGVLDDDGLEGEDLTREVNHAMFVTTFLRSMPEGAKARRGYERLIGSGRVPGEDMSFSAERGSRERVTSWKEAARVMDLGMASVLRVSEDKIRT--EKFRQALSSVLRTW 440
BLAST of mRNA_S-dermatodea_contig10089.61.1 vs. uniprot
Match: A0A7S3UU88_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU88_HETAK) HSP 1 Score: 63.2 bits (152), Expect = 3.670e-7 Identity = 51/149 (34.23%), Postives = 66/149 (44.30%), Query Frame = 1
Query: 1 VGEGFSPKYESSRERLVVVRGVERCVAEFCLVWSTARLLEACAPPETKKDFVFHLRALLEHAPARDRHEAVLVLCRGLFTPGHNDAASRTQDNVHGAALRSQEGDSLAEAFAEVQRGAAESP-------GGLRAARQAFPFLEMLARWA 426
V G P R V GVER + E LV ARLL + F+ L+ L E PAR+R +A+L CRGL+TPGH AS + V+ EV R +P +AA+ A+PFLE+ A WA
Sbjct: 36 VAAGDWPLVADERALTVAYYGVERALMEGVLVAMGARLLWRDEVAQAM--FLDPLKDLCERVPARERPQALLAYCRGLWTPGHGLHASGSNGGVY-----------------EVIRKGLYTPYLVSGEGDAFQAAKGAYPFLEIPALWA 165 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10089.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10089.61.1 >prot_S-dermatodea_contig10089.61.1 ID=prot_S-dermatodea_contig10089.61.1|Name=mRNA_S-dermatodea_contig10089.61.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=410bp VGEGFSPKYESSRERLVVVRGVERCVAEFCLVWSTARLLEACAPPETKKDback to top mRNA from alignment at S-dermatodea_contig10089:679..4171- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10089.61.1 ID=mRNA_S-dermatodea_contig10089.61.1|Name=mRNA_S-dermatodea_contig10089.61.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3493bp|location=Sequence derived from alignment at S-dermatodea_contig10089:679..4171- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10089:679..4171- >mRNA_S-dermatodea_contig10089.61.1 ID=mRNA_S-dermatodea_contig10089.61.1|Name=mRNA_S-dermatodea_contig10089.61.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2460bp|location=Sequence derived from alignment at S-dermatodea_contig10089:679..4171- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |