mRNA_S-dermatodea_contig10080.60.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10080.60.1
Unique NamemRNA_S-dermatodea_contig10080.60.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10080.60.1 vs. uniprot
Match: D8LMR0_ECTSI (MOSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR0_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 3.990e-52
Identity = 86/131 (65.65%), Postives = 104/131 (79.39%), Query Frame = 1
Query:    1 QPLTLSAPGMVSLEVPVVRKIGARGPEAGGDVVEVGIWSDTCRAVDQGNTVALWLSEFLEMENLRLVRMGDGYVRQTDPDYGIGFRTSFADGFPILLAAEESLEELNSRM-----DKEETIGMERFRPKWV 378
            +PL LSAPG+ SLEVPVVRK+GA GP AGG++VEVG+W DTC+A+DQG+  A WL  FL ++NLRLVRM DG+VR TDP YG GFRT FADGFP+LL AEESLEELNSR+      ++  +GM+RFRP  V
Sbjct:  122 EPLVLSAPGVASLEVPVVRKVGAGGPAAGGELVEVGVWKDTCQAIDQGDAAASWLQAFLGVDNLRLVRMKDGFVRPTDPGYGTGFRTGFADGFPMLLVAEESLEELNSRIAATGDGEQAAVGMDRFRPNIV 252          
BLAST of mRNA_S-dermatodea_contig10080.60.1 vs. uniprot
Match: A0A7S2W2F0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2F0_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.180e-29
Identity = 66/125 (52.80%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    7 LTLSAPGMVSLEVPVVRKIGARGPEAGGDVVEVGIWSDTCRAVDQGNTVALWLSEFLEMENLRLVRMGDGYVRQTDPDYGIGFRTSFADGFPILLAAEESLEELNSRMDKEET-IGMERFRPKWV 378
            L L+APGM  L VPV R  G   P      V V +WS   R VDQG+  A WLS FL+ + LRLVR  DGY+R+TDP++  G+RT+++DGFP+L+A+EESL ELN RM K +  I M RFRP  V
Sbjct:  121 LVLTAPGMEPLRVPVRR--GWFVPR-----VRVTVWSTPYRGVDQGDVAAKWLSSFLQRDGLRLVRFPDGYIRETDPEFAKGYRTAYSDGFPLLVASEESLGELNRRMGKSKPDIPMNRFRPNVV 238          
BLAST of mRNA_S-dermatodea_contig10080.60.1 vs. uniprot
Match: A0A835Z5C1_9STRA (MOSC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5C1_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.810e-29
Identity = 65/125 (52.00%), Postives = 80/125 (64.00%), Query Frame = 1
Query:    4 PLTLSAPGMVSLEVPVVRKIGARGPEAGGDVVEVGIWSDTCRAVDQGNTVALWLSEFLEMENLRLVRMGDGYVRQTDPDYGIGFRTSFADGFPILLAAEESLEELNSRMDKEETIGMERFRPKWV 378
            PL + APGM  L VP  R    RG + G   V VG+W D C  +DQG   A WLS  L    LRL+R  D + R TDP YG GF T+++DGFP+LLA+EESLE+LN+R+ +   IGMERFRP  V
Sbjct:  124 PLIIKAPGMPELVVPARR----RG-DPGAKEVPVGVWGDQCTGIDQGEETATWLSRCLGEPGLRLLRYDDAFTRGTDPAYGRGFFTAYSDGFPLLLASEESLEDLNARLAQ--PIGMERFRPNVV 241          
BLAST of mRNA_S-dermatodea_contig10080.60.1 vs. uniprot
Match: A0A482SPP9_9ARCH (MOSC domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPP9_9ARCH)

HSP 1 Score: 99.4 bits (246), Expect = 1.670e-23
Identity = 57/125 (45.60%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    7 LTLSAPGMVSLEVPVVRKIGARGPEAGGDVVEVGIWSDTCRAVD-QGNTVALWLSEFLEMENLRLVRMGDGYVRQTDPDYGIGFRTSFADGFPILLAAEESLEELNSRMDKEETIGMERFRPKWV 378
            + ++APGM  L      ++  R P   G   +V +WSD C AV+   N    W + FL   +++LVRM D +VR+TDP +    +TSFADG+P LLA+E SLE+LNS+MDK   I MERFRP  V
Sbjct:    1 MVITAPGMPEL------RVSLRTPS--GPTQKVKVWSDICDAVEITDNNCQQWFATFLNAPDVKLVRMADSFVRKTDPKFAPNGQTSFADGYPFLLASEGSLEDLNSKMDK--PITMERFRPNIV 115          
BLAST of mRNA_S-dermatodea_contig10080.60.1 vs. uniprot
Match: A0A7W1I5B1_9CHLR (MOSC domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W1I5B1_9CHLR)

HSP 1 Score: 94.7 bits (234), Expect = 4.820e-21
Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = 1
Query:    7 LTLSAPGMVSLEVPVVRKIGARGPEAGGDVVEVGIWSDTCRAVDQGNTVALWLSEFLEMENLRLVRMGDGYVRQTDPDYG-IGFRTSFADGFPILLAAEESLEELNSRMDKEETIGMERFRPKWV 378
            L L+AP M  L +P+  +         GD  ++ +W DTC A+DQG   A W + FL ++  RL+RM + + RQ DP Y  IG +  FADGFP+LL +EESL +LNSR+  E  + M RFRP  V
Sbjct:   80 LHLAAPEMPPLTIPIATR---------GDARDIVVWRDTCPAIDQGPESAAWFTAFLGLD-CRLMRMAEDHQRQVDPAYAEIGDQVGFADGFPVLLISEESLADLNSRL--ETPLPMNRFRPNVV 192          
BLAST of mRNA_S-dermatodea_contig10080.60.1 vs. uniprot
Match: A0A850ANC1_9CHLR (MOSC domain-containing protein n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A850ANC1_9CHLR)

HSP 1 Score: 93.6 bits (231), Expect = 1.010e-20
Identity = 60/127 (47.24%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    7 LTLSAPGMVSLEVPVVRKIGARGPEAGGDVVEVGIW-SDTCRAVDQGNTVALWLSEFLEMENLRLVRMGDGYVRQTDPDYGIGF--RTSFADGFPILLAAEESLEELNSRMDKEETIGMERFRPKWV 378
            +TLSAPG  SL+ PV         +A G    V IW S    AVDQG+  A W SE+L+   +RLVR+ DGY R+ + +Y +     T FADG+PILL AEESL++LNSR+D    + M RFRP  V
Sbjct:   66 ITLSAPGFDSLQFPV---------KASGHTFPVQIWGSHGVPAVDQGDETAEWFSEWLDAP-VRLVRIADGYKRKVNAEYAVNEDDHTGFADGYPILLIAEESLQDLNSRLDS--PLPMNRFRPNLV 180          
BLAST of mRNA_S-dermatodea_contig10080.60.1 vs. uniprot
Match: A0A1V9Z9X7_9STRA (Mosc domain protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z9X7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.410e-20
Identity = 50/124 (40.32%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    7 LTLSAPGMVSLEVPVVRKIGARGPEAGGDVVEVGIWSDTCRAVDQGNTVALWLSEFLEMENLRLVRMGDGYVRQTDPDYGIGFRTSFADGFPILLAAEESLEELNSRMDKEETIGMERFRPKWV 378
            +TL+APGM +L VPVV K         G+ ++V +W D  ++VDQG+  A W+ +FL    LR V+  D + R  DP +  G  T FADGFPIL+A + S++E++++   +  + M+RFRP  V
Sbjct:  229 ITLTAPGMPNLVVPVVNK---------GNELKVRVWKDYIQSVDQGDAAAEWIVKFLATPELRFVKFKDDFCRPCDPKFAPGHSTGFADGFPILIACQASIDEMSAQAKHK--VEMDRFRPNIV 341          
BLAST of mRNA_S-dermatodea_contig10080.60.1 vs. uniprot
Match: A0A7S3JU38_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JU38_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.910e-20
Identity = 57/127 (44.88%), Postives = 74/127 (58.27%), Query Frame = 1
Query:    1 QPLTLSAPGMVSLEVPVVRKIGARGPEAGGDVVEVGIWSDTCRAVDQGNTVALWLSEFLEMENLRLVRMGDGYVRQTDPDYGI-GFRTSFADGFPILLAAEESLEELNSRMDKEETIGMERFRPKWV 378
            +P+ L AP M  LEVPV+ +         G  + V  W D   A DQG+  A WLS+FL +  LRLVRM     R  D  Y + G RT F+DGFPILLA+  SLE+LN+++ K   + M+RFRP  V
Sbjct:  113 KPIILKAPDMTDLEVPVIIR---------GKKIIVRCWEDQIEAYDQGDEAAQWLSDFLTIPGLRLVRMAPLARRLVDKKYVMRGTRTGFSDGFPILLASNASLEDLNAKI-KTSNVPMDRFRPNIV 229          
BLAST of mRNA_S-dermatodea_contig10080.60.1 vs. uniprot
Match: A0A431L340_9BACT (MOSC domain-containing protein n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A431L340_9BACT)

HSP 1 Score: 91.3 bits (225), Expect = 8.070e-20
Identity = 57/126 (45.24%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    7 LTLSAPGMVSLEVPVVRKIGARGPEAGGDVVEVGIWSDTCRAVDQGNTVALWLSEFLEMENLRLVRMGDGYVRQTDPDYGIGF--RTSFADGFPILLAAEESLEELNSRMDKEETIGMERFRPKWV 378
            LTL+APGM  + VPV  + G R          V +WS+ CRA DQG+  A W S +L  E+ RLVRM + + RQ D  Y      +  FADGFPILL +EESL +LN+R+     + M RFRP  V
Sbjct:   70 LTLNAPGMEKIIVPVTDQFGQR---------RVTVWSNACRADDQGDAAAQWFSRYLG-EDCRLVRMSNTHKRQVDQRYAKRKTDQVGFADGFPILLISEESLNDLNNRLPT--ALPMNRFRPNIV 183          
BLAST of mRNA_S-dermatodea_contig10080.60.1 vs. uniprot
Match: A0A2W4R7X7_9CHLR (MOSC domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W4R7X7_9CHLR)

HSP 1 Score: 91.3 bits (225), Expect = 9.510e-20
Identity = 55/127 (43.31%), Postives = 74/127 (58.27%), Query Frame = 1
Query:    7 LTLSAPGMVSLEVPVVRKIGARGPEAGGDVVEVGIWSDTCRAVDQGNTVALWLSEFLEMENLRLVRMGDGYVRQTDPDYGIGF-RTSFADGFPILLAAEESLEELNSRMDK--EETIGMERFRPKWV 378
            L+L+APGM  + +P+         E  G    V IW DTC+  D+G+  A WLS++L+    RLVRM D YVR+ D  Y   F +  FADG+P+LLA E SL+ELN R+    +  + M RFRP  V
Sbjct:   71 LSLTAPGMPEIRIPL--------EERSGPTRRVVIWRDTCKGADEGDEAARWLSDYLDYP-ARLVRMPDDYVRRVDSRYSPQFAQVGFADGYPLLLAQEASLKELNHRLAARGKMPVPMSRFRPSVV 188          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10080.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR0_ECTSI3.990e-5265.65MOSC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2W2F0_9STRA2.180e-2952.80Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z5C1_9STRA2.810e-2952.00MOSC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A482SPP9_9ARCH1.670e-2345.60MOSC domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7W1I5B1_9CHLR4.820e-2144.00MOSC domain-containing protein n=1 Tax=Chloroflexi... [more]
A0A850ANC1_9CHLR1.010e-2047.24MOSC domain-containing protein n=2 Tax=Chloroflexi... [more]
A0A1V9Z9X7_9STRA3.410e-2040.32Mosc domain protein n=1 Tax=Thraustotheca clavata ... [more]
A0A7S3JU38_9STRA3.910e-2044.88Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A431L340_9BACT8.070e-2045.24MOSC domain-containing protein n=1 Tax=Candidatus ... [more]
A0A2W4R7X7_9CHLR9.510e-2043.31MOSC domain-containing protein n=1 Tax=Chloroflexi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10080contigS-dermatodea_contig10080:6999..7988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.6
Seed ortholog evalue1.4e-38
Seed eggNOG ortholog2880.D8LMR0
KEGG koko:K07140,ko:K18467
KEGG Pathwayko04144,map04144
EggNOG free text desc.MOSC domain-containing protein
EggNOG OGsCOG3217@1,KOG2362@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10080.60.1prot_S-dermatodea_contig10080.60.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10080 6999..7961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924138.4358566-CDS-S-dermatodea_contig10080:6998..71961622924138.4358566-CDS-S-dermatodea_contig10080:6998..7196Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10080 6999..7196 -
1694079043.6278517-CDS-S-dermatodea_contig10080:6998..71961694079043.6278517-CDS-S-dermatodea_contig10080:6998..7196Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10080 6999..7196 -
1622924138.447197-CDS-S-dermatodea_contig10080:7805..79611622924138.447197-CDS-S-dermatodea_contig10080:7805..7961Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10080 7806..7961 -
1694079043.6448095-CDS-S-dermatodea_contig10080:7805..79611694079043.6448095-CDS-S-dermatodea_contig10080:7805..7961Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10080 7806..7961 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924138.462505-UTR-S-dermatodea_contig10080:7961..79881622924138.462505-UTR-S-dermatodea_contig10080:7961..7988Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10080 7962..7988 -
1694079043.659247-UTR-S-dermatodea_contig10080:7961..79881694079043.659247-UTR-S-dermatodea_contig10080:7961..7988Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10080 7962..7988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10080.60.1

>prot_S-dermatodea_contig10080.60.1 ID=prot_S-dermatodea_contig10080.60.1|Name=mRNA_S-dermatodea_contig10080.60.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp
MVSLEVPVVRKIGARGPEAGGDVVEVGIWSDTCRAVDQGNTVALWLSEFL
EMENLRLVRMGDGYVRQTDPDYGIGFRTSFADGFPILLAAEESLEELNSR
MDKEETIGMERFRPKWV*
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mRNA from alignment at S-dermatodea_contig10080:6999..7988-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10080.60.1 ID=mRNA_S-dermatodea_contig10080.60.1|Name=mRNA_S-dermatodea_contig10080.60.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=990bp|location=Sequence derived from alignment at S-dermatodea_contig10080:6999..7988- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCCGCTCACGCTGTCTGCTCCCGGGATGGTCTCCCTCGAGGTACCGGT GGTGCGGAAGATCGGCGCGCGCGGACCGGAGGCGGGCGGAGATGTGGTGG AAGTCGGCATCTGGAGCGACACATGCAGAGCGGTCGACCAGGGAAACACT GTCGCCTTGTGGCTGAGCGAATTCTTGGAGATGGTGAGCGAAGGCGGCGA CAGTATTTTGGGGTCTCTGCTGCTGGTTGTACTGTAGGTGTTTCTGTGTC CATGTGTTTTGGCCTTGGAGGCGTAAGATGCGAACGGCCAAAAGGCTGGA GAGGGACTACTGCTGTATTTTATTCTTACCGCCGCGTTGTGGCCGCGCGC TGTTTTTGTGTTTTTGTTGGGGGTCGGGGGCGACTATCGATGAAAGCGTT ACTGGCGCGATCCGTCCAGTGAATCCTGTTCTCGTTCAAGATCCCTCTGC TGTTGTACTTCGCTCCACGGGCGAGTTGCACTGATGCGGTGATTTCCGGC TGCTGGTGCGCCTTTCGCCCGCCCCCAGAAGGCGAGCAGTGACGTAGACA GGATGGGGAAAAATTATTTTTCGCCACCTTACGCAGAGTAGGAAGGAACG ACTTGCCAACATCGGCGATAGATCGATCCTGTAGGAACAACGCGCCGTCC CGTCGAGGACGTGTAGTCCATGGTCTTAACAGCTAAGGCCTGTAAAGCAT GAACACCCCGACCCGTCCTCCACGCGGCCGTGCGTGTCATGTTCGGTGGC TTTTACGCCTGTCCCTTAATATTTTTCCACGATGTCACACAGGAAAACCT GAGGCTGGTGCGCATGGGGGACGGTTATGTGCGTCAGACTGACCCCGACT ACGGCATCGGCTTCCGCACTAGCTTCGCGGACGGTTTCCCCATCCTGCTC GCGGCGGAGGAGTCTCTTGAGGAGCTGAACTCGAGGATGGACAAGGAAGA GACGATCGGAATGGAACGCTTCCGGCCAAAGTGGGTTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10080:6999..7988-

>mRNA_S-dermatodea_contig10080.60.1 ID=mRNA_S-dermatodea_contig10080.60.1|Name=mRNA_S-dermatodea_contig10080.60.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig10080:6999..7988- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTCTCCCTCGAGGTACCGGTGGTGCGGAAGATCGGCGCGCGCGGACC
GGAGGCGGGCGGAGATGTGGTGGAAGTCGGCATCTGGAGCGACACATGCA
GAGCGGTCGACCAGGGAAACACTGTCGCCTTGTGGCTGAGCGAATTCTTG
GAGATGATGGTCTCCCTCGAGGTACCGGTGGTGCGGAAGATCGGCGCGCG
CGGACCGGAGGCGGGCGGAGATGTGGTGGAAGTCGGCATCTGGAGCGACA
CATGCAGAGCGGTCGACCAGGGAAACACTGTCGCCTTGTGGCTGAGCGAA
TTCTTGGAGATGGAAAACCTGAGGCTGGTGCGCATGGGGGACGGTTATGT
GCGTCAGACTGACCCCGACTACGGCATCGGCTTCCGCACTAGCTTCGCGG
ACGGTTTCCCCATCCTGCTCGCGGCGGAGGAGTCTCTTGAGGAGCTGAAC
TCGAGGATGGACAAGGAAGAGACGATCGGAATGGAACGCTTCCGGCCAAA
GTGGGTTTGAGAAAACCTGAGGCTGGTGCGCATGGGGGACGGTTATGTGC
GTCAGACTGACCCCGACTACGGCATCGGCTTCCGCACTAGCTTCGCGGAC
GGTTTCCCCATCCTGCTCGCGGCGGAGGAGTCTCTTGAGGAGCTGAACTC
GAGGATGGACAAGGAAGAGACGATCGGAATGGAACGCTTCCGGCCAAAGT
GGGTTTGA
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