mRNA_S-dermatodea_contig10076.56.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10076.56.1
Unique NamemRNA_S-dermatodea_contig10076.56.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10076.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10076contigS-dermatodea_contig10076:7324..8021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size339
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924138.009819-CDS-S-dermatodea_contig10076:7323..73721622924138.009819-CDS-S-dermatodea_contig10076:7323..7372Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10076 7324..7372 +
1694079043.306499-CDS-S-dermatodea_contig10076:7323..73721694079043.306499-CDS-S-dermatodea_contig10076:7323..7372Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10076 7324..7372 +
1622924138.0237072-CDS-S-dermatodea_contig10076:7731..80211622924138.0237072-CDS-S-dermatodea_contig10076:7731..8021Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10076 7732..8021 +
1694079043.31635-CDS-S-dermatodea_contig10076:7731..80211694079043.31635-CDS-S-dermatodea_contig10076:7731..8021Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10076 7732..8021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10076.56.1prot_S-dermatodea_contig10076.56.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10076 7324..8021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10076.56.1

>prot_S-dermatodea_contig10076.56.1 ID=prot_S-dermatodea_contig10076.56.1|Name=mRNA_S-dermatodea_contig10076.56.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
MGWLLTAVLGGFACVRGTHAFTEICSAASLASRSSNTAVAYQREIAAPPT
GCAVRPRRRVTTTALLSSSPSGGHARVAICSGNDMLRGSCGATVEGNGGA
VLARGRSARLSLS
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mRNA from alignment at S-dermatodea_contig10076:7324..8021+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10076.56.1 ID=mRNA_S-dermatodea_contig10076.56.1|Name=mRNA_S-dermatodea_contig10076.56.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=698bp|location=Sequence derived from alignment at S-dermatodea_contig10076:7324..8021+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGTGGCTACTGACCGCAGTCCTGGGCGGTTTCGCTTGTGTGCGAGG
TGCGCTATGTGTCTAACTGCTGTGTGATCCCGCCGCCAACCACTTTGAAT
CGTGTTTTATTGCAATACTACTGACTGTACAGAGTATGTCATCATGTGGC
CAGTTCTCACTCGGGGGGTTGGGCTGTTCCTTGTAGCATATCATGAGCAC
CAGCTGCACCAACATCAAACCCATCGAAACCACGCAGCCCTCCCCCGCCC
CCCTTACTCGTGTGCTGCTGCTGTGTCTCGTGGACGGACGAGTGGCCCTT
GCCCGTCACCTGGCTTTCACACCTCGACGTCAAAGCATAAAACATACTAC
TGCCTGTACGCACCTGACCAAAACACATGGCACATCCGAACCCCCAAAAA
CTTGGCAGGAACGCACGCGTTCACGGAGATATGCTCCGCGGCATCGCTTG
CATCCCGCTCCAGCAACACCGCTGTTGCCTATCAGCGCGAGATCGCGGCT
CCTCCCACCGGGTGTGCCGTCCGTCCACGCAGGAGAGTTACCACAACAGC
GTTGCTGTCCTCCTCGCCGAGCGGCGGACACGCTCGCGTAGCTATCTGCT
CAGGCAACGATATGCTTCGAGGTAGCTGCGGCGCTACTGTTGAGGGCAAC
GGCGGTGCCGTCCTCGCCCGTGGGCGTTCGGCACGCCTATCGCTGTCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10076:7324..8021+

>mRNA_S-dermatodea_contig10076.56.1 ID=mRNA_S-dermatodea_contig10076.56.1|Name=mRNA_S-dermatodea_contig10076.56.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig10076:7324..8021+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGTGGCTACTGACCGCAGTCCTGGGCGGTTTCGCTTGTGTGCGAGA
TGGGGTGGCTACTGACCGCAGTCCTGGGCGGTTTCGCTTGTGTGCGAGGA
ACGCACGCGTTCACGGAGATATGCTCCGCGGCATCGCTTGCATCCCGCTC
CAGCAACACCGCTGTTGCCTATCAGCGCGAGATCGCGGCTCCTCCCACCG
GGTGTGCCGTCCGTCCACGCAGGAGAGTTACCACAACAGCGTTGCTGTCC
TCCTCGCCGAGCGGCGGACACGCTCGCGTAGCTATCTGCTCAGGCAACGA
TATGCTTCGAGGTAGCTGCGGCGCTACTGTTGAGGGCAACGGCGGTGCCG
TCCTCGCCCGTGGGCGTTCGGCACGCCTATCGCTGTCAGAACGCACGCGT
TCACGGAGATATGCTCCGCGGCATCGCTTGCATCCCGCTCCAGCAACACC
GCTGTTGCCTATCAGCGCGAGATCGCGGCTCCTCCCACCGGGTGTGCCGT
CCGTCCACGCAGGAGAGTTACCACAACAGCGTTGCTGTCCTCCTCGCCGA
GCGGCGGACACGCTCGCGTAGCTATCTGCTCAGGCAACGATATGCTTCGA
GGTAGCTGCGGCGCTACTGTTGAGGGCAACGGCGGTGCCGTCCTCGCCCG
TGGGCGTTCGGCACGCCTATCGCTGTCA
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