mRNA_S-dermatodea_contig10073.54.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10073.54.1
Unique NamemRNA_S-dermatodea_contig10073.54.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10073.54.1 vs. uniprot
Match: A0A6H5KWS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 4.320e-16
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 AAARNEAITKAMGAVEGMKLLQHFRAHTGAVWCAEFSRKGQYLATGGADGLVKV 162
            A A  EA+ +A    +GMK+LQHF+AH GAVWCAEFSRKGQYLATGGADGLVK+
Sbjct: 1005 AVAEAEAV-EAXXXXKGMKMLQHFKAHVGAVWCAEFSRKGQYLATGGADGLVKI 1057
[Close]
BLAST of mRNA_S-dermatodea_contig10073.54.1 vs. uniprot
Match: D8LMN8_ECTSI (WD repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN8_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 8.050e-16
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:   49 GMKLLQHFRAHTGAVWCAEFSRKGQYLATGGADGLVKV 162
            GMK+LQHF+AH GAVWCAEFSRKGQYLATGGADGLVK+
Sbjct:  734 GMKMLQHFKAHVGAVWCAEFSRKGQYLATGGADGLVKI 771
[Close]
BLAST of mRNA_S-dermatodea_contig10073.54.1 vs. uniprot
Match: A0A835Z1J7_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1J7_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.290e-5
Identity = 19/29 (65.52%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   76 AHTGAVWCAEFSRKGQYLATGGADGLVKV 162
            AH GA+WC EFS+ G+ +ATGGADG++KV
Sbjct:  304 AHEGAIWCLEFSQNGRLVATGGADGVIKV 332
[Close]
BLAST of mRNA_S-dermatodea_contig10073.54.1 vs. uniprot
Match: B9RU08_RICCO (WD-repeat protein, putative n=2 Tax=Ricinus communis TaxID=3988 RepID=B9RU08_RICCO)

HSP 1 Score: 48.9 bits (115), Expect = 3.120e-5
Identity = 20/38 (52.63%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:   49 GMKLLQHFRAHTGAVWCAEFSRKGQYLATGGADGLVKV 162
            G+ + Q  RAH G +W  +FS  GQYLATGG DG+V++
Sbjct:  206 GVYMQQELRAHKGFIWTMKFSPDGQYLATGGEDGIVRI 243
[Close]
BLAST of mRNA_S-dermatodea_contig10073.54.1 vs. uniprot
Match: A0A1S2YCP6_CICAR (WD repeat-containing protein 44-like n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2YCP6_CICAR)

HSP 1 Score: 48.1 bits (113), Expect = 5.850e-5
Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:   43 VEGMKLLQHFRAHTGAVWCAEFSRKGQYLATGGADGLVKV 162
            +  M + Q  RAH G +W  +FS  GQYLATGG DG+V++
Sbjct:  176 LSAMYIGQEIRAHKGIIWTMKFSPNGQYLATGGEDGVVRI 215
[Close]
BLAST of mRNA_S-dermatodea_contig10073.54.1 vs. uniprot
Match: A0A0K9QTF2_SPIOL (Uncharacterized protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QTF2_SPIOL)

HSP 1 Score: 47.8 bits (112), Expect = 8.050e-5
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:   64 QHFRAHTGAVWCAEFSRKGQYLATGGADGLVKV 162
            Q F AH G++ C +FS  GQYLATGG DG++KV
Sbjct:  260 QEFPAHKGSILCMKFSHDGQYLATGGEDGILKV 292
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10073.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KWS7_9PHAE4.320e-1672.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMN8_ECTSI8.050e-1689.47WD repeat protein (Partial) (Fragment) n=1 Tax=Ect... [more]
A0A835Z1J7_9STRA2.290e-565.52WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
B9RU08_RICCO3.120e-552.63WD-repeat protein, putative n=2 Tax=Ricinus commun... [more]
A0A1S2YCP6_CICAR5.850e-550.00WD repeat-containing protein 44-like n=1 Tax=Cicer... [more]
A0A0K9QTF2_SPIOL8.050e-560.61Uncharacterized protein n=2 Tax=Spinacia oleracea ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10073contigS-dermatodea_contig10073:420..581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog2880.D8LMN8
Preferred nameWDR44
KEGG koko:K20241
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005874,GO:0008150,GO:0010008,GO:0012505,GO:0015630,GO:0016020,GO:0017016,GO:0017137,GO:0019899,GO:0030334,GO:0031090,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032991,GO:0040012,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0050789,GO:0050794,GO:0051020,GO:0051270,GO:0065007,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:2000145
EggNOG free text desc.Rab GTPase binding
EggNOG OGsKOG0283@1,KOG0283@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924137.9720073-CDS-S-dermatodea_contig10073:419..5811622924137.9720073-CDS-S-dermatodea_contig10073:419..581Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10073 420..581 -
1694079043.2959578-CDS-S-dermatodea_contig10073:419..5811694079043.2959578-CDS-S-dermatodea_contig10073:419..581Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10073 420..581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10073.54.1prot_S-dermatodea_contig10073.54.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10073 420..581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10073.54.1

>prot_S-dermatodea_contig10073.54.1 ID=prot_S-dermatodea_contig10073.54.1|Name=mRNA_S-dermatodea_contig10073.54.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=54bp
AAARNEAITKAMGAVEGMKLLQHFRAHTGAVWCAEFSRKGQYLATGGADG
LVKV
back to top

mRNA from alignment at S-dermatodea_contig10073:420..581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10073.54.1 ID=mRNA_S-dermatodea_contig10073.54.1|Name=mRNA_S-dermatodea_contig10073.54.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at S-dermatodea_contig10073:420..581- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGCCGCGAGGAACGAGGCTATCACAAAGGCGATGGGCGCCGTCGAGGG
CATGAAGCTGCTGCAGCACTTCAGGGCGCACACCGGGGCGGTGTGGTGCG
CGGAGTTTAGCCGTAAGGGGCAGTACCTGGCGACCGGCGGCGCGGACGGA
CTTGTGAAGGTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10073:420..581-

>mRNA_S-dermatodea_contig10073.54.1 ID=mRNA_S-dermatodea_contig10073.54.1|Name=mRNA_S-dermatodea_contig10073.54.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at S-dermatodea_contig10073:420..581- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGCCGCGAGGAACGAGGCTATCACAAAGGCGATGGGCGCCGTCGAGGG
CATGAAGCTGCTGCAGCACTTCAGGGCGCACACCGGGGCGGTGTGGTGCG
CGGAGTTTAGCCGTAAGGGGCAGTACCTGGCGACCGGCGGCGCGGACGGA
CTTGTGAAGGTGGCTGCCGCGAGGAACGAGGCTATCACAAAGGCGATGGG
CGCCGTCGAGGGCATGAAGCTGCTGCAGCACTTCAGGGCGCACACCGGGG
CGGTGTGGTGCGCGGAGTTTAGCCGTAAGGGGCAGTACCTGGCGACCGGC
GGCGCGGACGGACTTGTGAAGGTG
back to top