mRNA_S-dermatodea_contig10069.51.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10069.51.1
Unique NamemRNA_S-dermatodea_contig10069.51.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10069.51.1 vs. uniprot
Match: A0A6H5K1W6_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W6_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 4.190e-19
Identity = 51/63 (80.95%), Postives = 59/63 (93.65%), Query Frame = 2 
Query:    5 AALVVQTFVRGAQARRSFAVLVVEHREAAKLENQIVALQKKLDEERKARMEMEKAHKQLALRA 193
            AA+ VQTFVRGAQARR++AVLVVEHREAAKLENQI+ALQ+KLDEERKAR++ME+ HKQ AL A
Sbjct:  890 AAVAVQTFVRGAQARRNYAVLVVEHREAAKLENQILALQRKLDEERKARLKMEEDHKQFALEA 952
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BLAST of mRNA_S-dermatodea_contig10069.51.1 vs. uniprot
Match: D8LHM3_ECTSI (Myosin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHM3_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 4.230e-19
Identity = 51/63 (80.95%), Postives = 59/63 (93.65%), Query Frame = 2 
Query:    5 AALVVQTFVRGAQARRSFAVLVVEHREAAKLENQIVALQKKLDEERKARMEMEKAHKQLALRA 193
            AA+ VQTFVRGAQARR++AVLVVEHREAAKLENQI+ALQ+KLDEERKAR++ME+ HKQ AL A
Sbjct:  935 AAVAVQTFVRGAQARRNYAVLVVEHREAAKLENQILALQRKLDEERKARLKMEEDHKQFALEA 997
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BLAST of mRNA_S-dermatodea_contig10069.51.1 vs. uniprot
Match: A0A835YXJ7_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXJ7_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.630e-5
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 2 
Query:    5 AALVVQTFVRGAQARRSFAVLVVEHREAAKLENQIVALQKKLDEERKARMEMEKAHKQLALRAE 196
            AA+ VQ  VR  + RR + VLV E REAAKLENQI ALQ +L +E+ AR ++E+  K+LA + E
Sbjct:  821 AAVKVQAMVRMVEERRRYKVLVHEAREAAKLENQIAALQARLQQEQDARRKVEEQTKELAAKLE 884
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10069.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K1W6_9PHAE4.190e-1980.95Myosin motor domain-containing protein n=1 Tax=Ect... [more]
D8LHM3_ECTSI4.230e-1980.95Myosin motor domain-containing protein n=1 Tax=Ect... [more]
A0A835YXJ7_9STRA3.630e-553.13P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10069contigS-dermatodea_contig10069:1109..2124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size296
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924137.777656-CDS-S-dermatodea_contig10069:1108..12741622924137.777656-CDS-S-dermatodea_contig10069:1108..1274Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10069 1109..1274 +
1694079043.160537-CDS-S-dermatodea_contig10069:1108..12741694079043.160537-CDS-S-dermatodea_contig10069:1108..1274Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10069 1109..1274 +
1622924137.786361-CDS-S-dermatodea_contig10069:1994..21221622924137.786361-CDS-S-dermatodea_contig10069:1994..2122Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10069 1995..2122 +
1694079043.176734-CDS-S-dermatodea_contig10069:1994..21221694079043.176734-CDS-S-dermatodea_contig10069:1994..2122Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10069 1995..2122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10069.51.1prot_S-dermatodea_contig10069.51.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10069 1109..2122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10069.51.1

>prot_S-dermatodea_contig10069.51.1 ID=prot_S-dermatodea_contig10069.51.1|Name=mRNA_S-dermatodea_contig10069.51.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=98bp
RRRLGGADLCARGAGPAVFRRIGCGTPGGGEAGEPDRGAAEEARRGAKGS
DGDGKGPQAARAQGRGSSKGLRRDAPRPPHLRYRRRKISTTPGTALGR
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mRNA from alignment at S-dermatodea_contig10069:1109..2124+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10069.51.1 ID=mRNA_S-dermatodea_contig10069.51.1|Name=mRNA_S-dermatodea_contig10069.51.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1016bp|location=Sequence derived from alignment at S-dermatodea_contig10069:1109..2124+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGACGCCGCCTTGGTGGTGCAGACCTTTGTGCGAGGGGCGCAGGCCCGGC
GGTCTTTCGCCGTATTGGTTGTGGAACACCGGGAGGCGGCGAAGCTGGAG
AACCAGATCGTGGCGCTGCAGAAGAAGCTCGACGAGGAGCGAAAGGCTCG
GATGGAGATGGAAAAGGTGCGTGCGTTTCACCCGTGTTGCAGAAAAGGGG
GGTTATGACGTCAAAACACGATAATTACTATTTCAAAAGCAAGTGAAACC
TCCAGGCGTTATATTTTTCCATGTGACGATTGGAGCGGCCCAGCAGCAGA
GGCAACGTGGTGTGTGTGTGTGTGTGTTGTTGTGTGCGTGTGTGCTACAA
CGTAGCGAAATGGAATGGTTGTGGAAATGGAATGGCTGTGGAAATGGTAT
GGTGTCGTACGGTGTGTTGTGTTGTGGTGTGGAATTGTGTGGAAAGAAGC
GTTGGTTATATTTTTTCGTTTTTTTTTAGAGTGATGCTGTACGATATGGT
ATTGTATTGTATTGCAATGTGTTGCAATTTCGTGCGACTTTTTTTTTGTT
TATGAGCCAATCGGTCGGATTGCGAGAATGACTCACGGCGCAGTGATATG
GAATGGTATGAAATGGTTTGAAACTGTACGGTAACGGCGTAGAATATAAT
GGAATGGTATGCTATGGTATGATTTCCCACCCCCAAGATTTTCCTTTGCT
CGCCTCTTGTGGTGGCAAAGCAGGATGGAACGACTGGCCATCGTTTATCG
ATCCTGCTGTGGAAACAATGCTCCCTCCTCCCGAGGACGGACGCCTGGTC
AATAGGCTTGCAAAAATCCCCCCTCCCCATCCCCCCAAACCCGCTAACCT
CAAACACGCCGTCCACGCCTCTTGTGAAAACCCCAGGCCCACAAGCAGCT
CGCGCTCAGGGCAGAGGCAGCAGCAAAGGCCTCCGCCGCGATGCCCCCCG
CCCACCCCACCTCCGCTACCGCCGCCGCAAAATCTCTACAACTCCCGGAA
CCGCTCTCGGCCGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10069:1109..2124+

>mRNA_S-dermatodea_contig10069.51.1 ID=mRNA_S-dermatodea_contig10069.51.1|Name=mRNA_S-dermatodea_contig10069.51.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at S-dermatodea_contig10069:1109..2124+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGACGCCGCCTTGGTGGTGCAGACCTTTGTGCGAGGGGCGCAGGCCCGGC
GGTCTTTCGCCGTATTGGTTGTGGAACACCGGGAGGCGGCGAAGCTGGAG
AACCAGATCGTGGCGCTGCAGAAGAAGCTCGACGAGGAGCGAAAGGCTCG
GATGGAGATGGAAAAGAGACGCCGCCTTGGTGGTGCAGACCTTTGTGCGA
GGGGCGCAGGCCCGGCGGTCTTTCGCCGTATTGGTTGTGGAACACCGGGA
GGCGGCGAAGCTGGAGAACCAGATCGTGGCGCTGCAGAAGAAGCTCGACG
AGGAGCGAAAGGCTCGGATGGAGATGGAAAAGGCCCACAAGCAGCTCGCG
CTCAGGGCAGAGGCAGCAGCAAAGGCCTCCGCCGCGATGCCCCCCGCCCA
CCCCACCTCCGCTACCGCCGCCGCAAAATCTCTACAACTCCCGGAACCGC
TCTCGGCCGCGCCCACAAGCAGCTCGCGCTCAGGGCAGAGGCAGCAGCAA
AGGCCTCCGCCGCGATGCCCCCCGCCCACCCCACCTCCGCTACCGCCGCC
GCAAAATCTCTACAACTCCCGGAACCGCTCTCGGCCGC
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