mRNA_S-dermatodea_contig10067.49.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10067.49.1
Unique NamemRNA_S-dermatodea_contig10067.49.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10067.49.1 vs. uniprot
Match: A0A0D3IVF4_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A0D3IVF4_EMIHU)

HSP 1 Score: 60.1 bits (144), Expect = 2.800e-8
Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:   34 SFTLRNVPPDITKAPMEDFDSLLEWCLASIIAGPGASAAGLPSPDEVRENPSAHRRQPMLGKAAIAQARLPIREGGYGLTSSADIRDAAFIGSQALV 324
            +F LR +PP +T+    + D L+E  L +++ G   +  G  SP                 + A+ QARLP+R GG GLTS+ DIR+AA++G+ ALV
Sbjct:  217 TFFLRTMPPSVTQDAAREHDRLMEEALYTLVGG---ARVGRNSP---------------RWRVAVQQARLPVRMGGMGLTSAMDIREAAWVGTWALV 295
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BLAST of mRNA_S-dermatodea_contig10067.49.1 vs. uniprot
Match: A0A0D3JPK8_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A0D3JPK8_EMIHU)

HSP 1 Score: 60.1 bits (144), Expect = 2.940e-8
Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:   34 SFTLRNVPPDITKAPMEDFDSLLEWCLASIIAGPGASAAGLPSPDEVRENPSAHRRQPMLGKAAIAQARLPIREGGYGLTSSADIRDAAFIGSQALV 324
            +F LR +PP +T+    + D L+E  L +++ G   +  G  SP                 + A+ QARLP+R GG GLTS+ DIR+AA++G+ ALV
Sbjct:  508 TFFLRTMPPSVTQDAAREHDRLMEEALYTLVGG---ARVGRNSP---------------RWRVAVQQARLPVRMGGMGLTSAMDIREAAWVGTWALV 586
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BLAST of mRNA_S-dermatodea_contig10067.49.1 vs. uniprot
Match: A0A7S3WKE0_EMIHU (Hypothetical protein (Fragment) n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WKE0_EMIHU)

HSP 1 Score: 60.1 bits (144), Expect = 3.000e-8
Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:   34 SFTLRNVPPDITKAPMEDFDSLLEWCLASIIAGPGASAAGLPSPDEVRENPSAHRRQPMLGKAAIAQARLPIREGGYGLTSSADIRDAAFIGSQALV 324
            +F LR +PP +T+    + D L+E  L +++ G   +  G  SP                 + A+ QARLP+R GG GLTS+ DIR+AA++G+ ALV
Sbjct:  516 TFFLRTMPPSVTQDAAREHDRLMEEALYTLVGG---ARVGRNSP---------------RWRVAVQQARLPVRMGGMGLTSAMDIREAAWVGTWALV 594
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10067.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0D3IVF4_EMIHU2.800e-837.11Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A0D3JPK8_EMIHU2.940e-837.11Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S3WKE0_EMIHU3.000e-837.11Hypothetical protein (Fragment) n=3 Tax=Emiliania ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10067contigS-dermatodea_contig10067:7600..7923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924137.6958537-CDS-S-dermatodea_contig10067:7599..79231622924137.6958537-CDS-S-dermatodea_contig10067:7599..7923Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10067 7600..7923 +
1694079043.0789318-CDS-S-dermatodea_contig10067:7599..79231694079043.0789318-CDS-S-dermatodea_contig10067:7599..7923Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10067 7600..7923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10067.49.1prot_S-dermatodea_contig10067.49.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10067 7600..7923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10067.49.1

>prot_S-dermatodea_contig10067.49.1 ID=prot_S-dermatodea_contig10067.49.1|Name=mRNA_S-dermatodea_contig10067.49.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
MLSWLSAAVRTSFTLRNVPPDITKAPMEDFDSLLEWCLASIIAGPGASAA
GLPSPDEVRENPSAHRRQPMLGKAAIAQARLPIREGGYGLTSSADIRDAA
FIGSQALV
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mRNA from alignment at S-dermatodea_contig10067:7600..7923+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10067.49.1 ID=mRNA_S-dermatodea_contig10067.49.1|Name=mRNA_S-dermatodea_contig10067.49.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=324bp|location=Sequence derived from alignment at S-dermatodea_contig10067:7600..7923+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTGTCATGGCTATCTGCCGCCGTTCGCACCTCATTTACTCTGCGCAA
CGTCCCCCCGGATATCACGAAAGCTCCGATGGAGGATTTCGACAGCTTGC
TTGAGTGGTGTCTCGCGTCCATCATCGCTGGCCCGGGGGCGAGCGCTGCA
GGACTACCTTCTCCCGACGAAGTACGCGAAAACCCGTCCGCCCATCGCCG
ACAGCCCATGCTGGGGAAAGCCGCCATAGCCCAGGCACGACTTCCCATCC
GAGAGGGCGGGTACGGATTGACCAGCAGCGCCGATATCCGCGACGCTGCC
TTCATTGGTAGCCAAGCGCTTGTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10067:7600..7923+

>mRNA_S-dermatodea_contig10067.49.1 ID=mRNA_S-dermatodea_contig10067.49.1|Name=mRNA_S-dermatodea_contig10067.49.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig10067:7600..7923+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTGTCATGGCTATCTGCCGCCGTTCGCACCTCATTTACTCTGCGCAA
CGTCCCCCCGGATATCACGAAAGCTCCGATGGAGGATTTCGACAGCTTGC
TTGAGTGGTGTCTCGCGTCCATCATCGCTGGCCCGGGGGCGAGCGCTGCA
GGACTACCTTCTCCCGACGAAGTACGCGAAAACCCGTCCGCCCATCGCCG
ACAGCCCATGCTGGGGAAAGCCGCCATAGCCCAGGCACGACTTCCCATCC
GAGAGGGCGGGTACGGATTGACCAGCAGCGCCGATATCCGCGACGCTGCC
TTCATTGGTAGCCAAGCGCTTGTCATGTTGTCATGGCTATCTGCCGCCGT
TCGCACCTCATTTACTCTGCGCAACGTCCCCCCGGATATCACGAAAGCTC
CGATGGAGGATTTCGACAGCTTGCTTGAGTGGTGTCTCGCGTCCATCATC
GCTGGCCCGGGGGCGAGCGCTGCAGGACTACCTTCTCCCGACGAAGTACG
CGAAAACCCGTCCGCCCATCGCCGACAGCCCATGCTGGGGAAAGCCGCCA
TAGCCCAGGCACGACTTCCCATCCGAGAGGGCGGGTACGGATTGACCAGC
AGCGCCGATATCCGCGACGCTGCCTTCATTGGTAGCCAAGCGCTTGTC
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