mRNA_S-dermatodea_contig10067.48.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10067.48.1
Unique NamemRNA_S-dermatodea_contig10067.48.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10067.48.1 vs. uniprot
Match: A0A6H5JHW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW4_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 5.830e-41
Identity = 83/139 (59.71%), Postives = 96/139 (69.06%), Query Frame = 3 
Query:    3 NPGVDNLDSPLVGEEGRSPSPAAGWRGAWSKGNSGSVRFLFQEFMSELLQGAAECTFEVGQGSTLTVLLDEGLYKGAKAAAGKAAERYYVERRWAHGGQAAG---------GPLYNRHCGELLDQFVKTQMLSHFLSEG 392
            NPGVD+LD P  G  G          G W+ G + ++RFLF+EF+SELLQGA E TF VGQG T T+LLDE LYK AKA+A K AER+Y E+R + GG+  G         GPLYNRHCG LLDQFVKTQMLSHFLSEG
Sbjct: 2268 NPGVDDLDCPSNGGAGADAG------GVWAAGTARTIRFLFREFISELLQGATESTFRVGQGPTATILLDEHLYKRAKASAAKTAERFYDEQRRSSGGRVGGHGLHENQYPGPLYNRHCGLLLDQFVKTQMLSHFLSEG 2400
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BLAST of mRNA_S-dermatodea_contig10067.48.1 vs. uniprot
Match: D8LH28_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH28_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 6.830e-40
Identity = 83/139 (59.71%), Postives = 95/139 (68.35%), Query Frame = 3 
Query:    3 NPGVDNLDSPLVGEEGRSPSPAAGWRGAWSKGNSGSVRFLFQEFMSELLQGAAECTFEVGQGSTLTVLLDEGLYKGAKAAAGKAAERYYVERRWAHGGQAAG---------GPLYNRHCGELLDQFVKTQMLSHFLSEG 392
            NPGVD+LD P  G  G          G W+ G + S+RFLF+EF+SELLQGA E TF VGQGST T+LLDE LYK AKA+A K AE +Y ++R + G   AG         GPLYNRHCG LLDQFVKTQMLSHFLSEG
Sbjct: 1482 NPGVDDLDCPSSGGAGADAG------GVWAAGTARSIRFLFREFISELLQGATESTFRVGQGSTATILLDEHLYKRAKASAAKTAELFYDDQRRSSGRGGAGHGLHEQQYPGPLYNRHCGLLLDQFVKTQMLSHFLSEG 1614
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10067.48.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHW4_9PHAE5.830e-4159.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH28_ECTSI6.830e-4059.71UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10067contigS-dermatodea_contig10067:1158..2425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue3.3e-24
Seed eggNOG ortholog2880.D8LH28
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG3569@1,KOG3569@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size456
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10067.48.1prot_S-dermatodea_contig10067.48.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10067 1292..2373 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924137.63166-UTR-S-dermatodea_contig10067:1157..12911622924137.63166-UTR-S-dermatodea_contig10067:1157..1291Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10067 1158..1291 +
1694079042.9947546-UTR-S-dermatodea_contig10067:1157..12911694079042.9947546-UTR-S-dermatodea_contig10067:1157..1291Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10067 1158..1291 +
1622924137.6605003-UTR-S-dermatodea_contig10067:2373..24251622924137.6605003-UTR-S-dermatodea_contig10067:2373..2425Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10067 2374..2425 +
1694079043.0675457-UTR-S-dermatodea_contig10067:2373..24251694079043.0675457-UTR-S-dermatodea_contig10067:2373..2425Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10067 2374..2425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924137.641343-CDS-S-dermatodea_contig10067:1291..13091622924137.641343-CDS-S-dermatodea_contig10067:1291..1309Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10067 1292..1309 +
1694079043.0265813-CDS-S-dermatodea_contig10067:1291..13091694079043.0265813-CDS-S-dermatodea_contig10067:1291..1309Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10067 1292..1309 +
1622924137.6502926-CDS-S-dermatodea_contig10067:2121..23731622924137.6502926-CDS-S-dermatodea_contig10067:2121..2373Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10067 2122..2373 +
1694079043.0350814-CDS-S-dermatodea_contig10067:2121..23731694079043.0350814-CDS-S-dermatodea_contig10067:2121..2373Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10067 2122..2373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10067.48.1

>prot_S-dermatodea_contig10067.48.1 ID=prot_S-dermatodea_contig10067.48.1|Name=mRNA_S-dermatodea_contig10067.48.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=90bp
MSELLQGAAECTFEVGQGSTLTVLLDEGLYKGAKAAAGKAAERYYVERRW
AHGGQAAGGPLYNRHCGELLDQFVKTQMLSHFLSEGTWD*
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mRNA from alignment at S-dermatodea_contig10067:1158..2425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10067.48.1 ID=mRNA_S-dermatodea_contig10067.48.1|Name=mRNA_S-dermatodea_contig10067.48.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1268bp|location=Sequence derived from alignment at S-dermatodea_contig10067:1158..2425+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCAACCCCGGCGTCGACAACCTCGACAGCCCGCTCGTAGGAGAGGAGGGG
CGGAGCCCTAGCCCTGCGGCTGGCTGGAGGGGGGCCTGGTCGAAAGGAAA
CTCGGGCAGTGTACGTTTTCTGTTCCAAGAGTTCATGTCGGAGCTGCTGC
AGGTGTGTGTTGTGTGTGTGTGTGCCTACGTGCGTAATACATTAGGTTGG
GGGAGGGGAACGCGTATTGTAGTAATAGTATAAGGCCTAAAAAAAAGGGT
TGTTTAGCAGGGGGAGGAATATATAACGCAAATATAAAGGCCTCCATGCT
CCCGGGGGTGGGGTGGGGGGGCGGGGGGGGGGTCATGTCTTGTAAGCCTT
AGGTGTTAGACCATTGACCACGCGTCCTCAGGAGGAAGAAGCGTTTGTTC
CCACAGAATCGATCTATCGCCGGTGGTCAATCATTCCTTCCTACTTTGCC
AAAGGTGGCTAAAACGTTAGGGGGAGGCAATTAAGTAATTATTATTGTCG
TTTCCAGACGGACATAGACCACGCATGTCATATCCCAACAATGCCGGGAC
GGAAAGATATGCCGGGTTTTCGGTTGGCCGGCCAGGCTGCATTTCACAAG
GGTGATACCCAACTGCTATTAACAGCCATCATCCTTGCGTTTGCGACGCC
AACCGATATGCGATTGGGTTGATTATGCATACCAGAAAACCAAATGTTGC
ACGTTCAGTAGGCGTGAGTATTCTCCAAACACCGCAAAGAGACACTTCGA
CCTCCGTGCGAGCGCAAAAAGCGCCGCACCCACACAACATACACGACGGA
ACATACACAGTAGACGTGTGATGCCGTGGTAAAAACGTTTTTCGGCCAAA
ACCGAACTCAGTCCGAAAAGGCTCAACAATACCTAAAACGAAAACGAAAA
CGAAAACGAACGCGAAAACGCCTCCCTAAATAAATGCCGTCGGTTACACC
TTTTTTTTTTCCAGGGGGCCGCGGAATGTACGTTTGAGGTGGGCCAAGGG
TCCACGCTGACGGTTCTCCTGGACGAGGGGCTGTACAAGGGCGCCAAGGC
CGCCGCTGGGAAAGCTGCGGAACGGTACTACGTCGAGAGGCGGTGGGCGC
ATGGGGGGCAGGCGGCCGGGGGACCTCTGTACAACCGCCATTGCGGCGAG
CTGCTGGACCAGTTCGTGAAAACGCAGATGCTCTCGCATTTTTTGTCCGA
AGGGACTTGGGACTGATTGAGTCGAATTAGATTGAATTGAATTGACTTGA
AAATGGTTGGTTTATTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10067:1158..2425+

>mRNA_S-dermatodea_contig10067.48.1 ID=mRNA_S-dermatodea_contig10067.48.1|Name=mRNA_S-dermatodea_contig10067.48.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at S-dermatodea_contig10067:1158..2425+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGGAGCTGCTGCAGATGTCGGAGCTGCTGCAGGGGGCCGCGGAATG
TACGTTTGAGGTGGGCCAAGGGTCCACGCTGACGGTTCTCCTGGACGAGG
GGCTGTACAAGGGCGCCAAGGCCGCCGCTGGGAAAGCTGCGGAACGGTAC
TACGTCGAGAGGCGGTGGGCGCATGGGGGGCAGGCGGCCGGGGGACCTCT
GTACAACCGCCATTGCGGCGAGCTGCTGGACCAGTTCGTGAAAACGCAGA
TGCTCTCGCATTTTTTGTCCGAAGGGACTTGGGACTGAGGGGCCGCGGAA
TGTACGTTTGAGGTGGGCCAAGGGTCCACGCTGACGGTTCTCCTGGACGA
GGGGCTGTACAAGGGCGCCAAGGCCGCCGCTGGGAAAGCTGCGGAACGGT
ACTACGTCGAGAGGCGGTGGGCGCATGGGGGGCAGGCGGCCGGGGGACCT
CTGTACAACCGCCATTGCGGCGAGCTGCTGGACCAGTTCGTGAAAACGCA
GATGCTCTCGCATTTTTTGTCCGAAGGGACTTGGGACTGA
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