mRNA_S-dermatodea_contig10041.39.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10041.39.1
Unique NamemRNA_S-dermatodea_contig10041.39.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10041.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10041contigS-dermatodea_contig10041:5755..6320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size567
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924137.086626-UTR-S-dermatodea_contig10041:5754..59541622924137.086626-UTR-S-dermatodea_contig10041:5754..5954Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10041 5755..5954 +
1694079042.6081557-UTR-S-dermatodea_contig10041:5754..59541694079042.6081557-UTR-S-dermatodea_contig10041:5754..5954Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10041 5755..5954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924137.1007168-CDS-S-dermatodea_contig10041:5954..63201622924137.1007168-CDS-S-dermatodea_contig10041:5954..6320Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10041 5955..6320 +
1694079042.6168892-CDS-S-dermatodea_contig10041:5954..63201694079042.6168892-CDS-S-dermatodea_contig10041:5954..6320Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10041 5955..6320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10041.39.1prot_S-dermatodea_contig10041.39.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10041 5955..6320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10041.39.1

>prot_S-dermatodea_contig10041.39.1 ID=prot_S-dermatodea_contig10041.39.1|Name=mRNA_S-dermatodea_contig10041.39.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=122bp
MVDRWYDTAGELWLKPTPLALTINPTTRHTNSYIIIVVINHHPKLYFTII
LKKRTYRYRAGRDSPPCSTTKELMTPCTVFYSPYVVQSRLLSLPRHTICT
RFRVLIDYRPAKPSESVSNNKF
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mRNA from alignment at S-dermatodea_contig10041:5755..6320+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10041.39.1 ID=mRNA_S-dermatodea_contig10041.39.1|Name=mRNA_S-dermatodea_contig10041.39.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=566bp|location=Sequence derived from alignment at S-dermatodea_contig10041:5755..6320+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTCCATTATATGTCCAGCTTTCCTGTTTTTCAATGACGACGAAGCAATG
ATAAATCACCATCACTCATCAGTCAATTAATTCAGCCGCCCTATCAAAAC
CAGCCACATCTATCTCTCCTTCTGCCTCCTCCTCCTCGCATCTGCTGTGT
GGCCGCCTGGTGGTACTTACTGCAAATGTAAATAATAAATCCGCTCCTCG
ATGGTCGATCGATGGTATGATACTGCGGGAGAGCTCTGGCTCAAGCCTAC
TCCTTTAGCACTAACCATCAACCCAACGACAAGACACACTAATTCCTATA
TCATCATCGTCGTCATCAATCATCATCCAAAATTATACTTTACTATTATA
CTAAAAAAACGAACATACCGTTACCGCGCTGGGCGCGACTCTCCGCCGTG
CTCCACCACTAAAGAACTAATGACGCCCTGCACGGTATTTTACTCACCTT
ACGTGGTACAGAGTAGATTGTTAAGCCTCCCACGACATACAATTTGTACT
CGCTTCCGAGTACTTATCGACTATCGTCCTGCCAAACCAAGTGAGTCCGT
TTCGAATAATAAGTTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig10041:5755..6320+

>mRNA_S-dermatodea_contig10041.39.1 ID=mRNA_S-dermatodea_contig10041.39.1|Name=mRNA_S-dermatodea_contig10041.39.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at S-dermatodea_contig10041:5755..6320+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTCGATCGATGGTATGATACTGCGGGAGAGCTCTGGCTCAAGCCTAC
TCCTTTAGCACTAACCATCAACCCAACGACAAGACACACTAATTCCTATA
TCATCATCGTCGTCATCAATCATCATCCAAAATTATACTTTACTATTATA
CTAAAAAAACGAACATACCGTTACCGCGCTGGGCGCGACTCTCCGCCGTG
CTCCACCACTAAAGAACTAATGACGCCCTGCACGGTATTTTACTCACCTT
ACGTGGTACAGAGTAGATTGTTAAGCCTCCCACGACATACAATTTGTACT
CGCTTCCGAGTACTTATCGACTATCGTCCTGCCAAACCAAGTGAGTCCGT
TTCGAATAATAAGTTTATGGTCGATCGATGGTATGATACTGCGGGAGAGC
TCTGGCTCAAGCCTACTCCTTTAGCACTAACCATCAACCCAACGACAAGA
CACACTAATTCCTATATCATCATCGTCGTCATCAATCATCATCCAAAATT
ATACTTTACTATTATACTAAAAAAACGAACATACCGTTACCGCGCTGGGC
GCGACTCTCCGCCGTGCTCCACCACTAAAGAACTAATGACGCCCTGCACG
GTATTTTACTCACCTTACGTGGTACAGAGTAGATTGTTAAGCCTCCCACG
ACATACAATTTGTACTCGCTTCCGAGTACTTATCGACTATCGTCCTGCCA
AACCAAGTGAGTCCGTTTCGAATAATAAGTTT
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