mRNA_S-latissima_F_contig1037.333.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1037.333.1
Unique NamemRNA_S-latissima_F_contig1037.333.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1037.333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1037contigS-latissima_F_contig1037:7539..11828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size654
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1037.333.1prot_S-latissima_F_contig1037.333.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1037 7539..11828 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815406.5372174-CDS-S-latissima_F_contig1037:7538..77151622815406.5372174-CDS-S-latissima_F_contig1037:7538..7715Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1037 7539..7715 +
1693924864.054326-CDS-S-latissima_F_contig1037:7538..77151693924864.054326-CDS-S-latissima_F_contig1037:7538..7715Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1037 7539..7715 +
1622815406.5470488-CDS-S-latissima_F_contig1037:8720..89581622815406.5470488-CDS-S-latissima_F_contig1037:8720..8958Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1037 8721..8958 +
1693924864.0646305-CDS-S-latissima_F_contig1037:8720..89581693924864.0646305-CDS-S-latissima_F_contig1037:8720..8958Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1037 8721..8958 +
1622815406.5576558-CDS-S-latissima_F_contig1037:9668..97301622815406.5576558-CDS-S-latissima_F_contig1037:9668..9730Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1037 9669..9730 +
1693924864.0734138-CDS-S-latissima_F_contig1037:9668..97301693924864.0734138-CDS-S-latissima_F_contig1037:9668..9730Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1037 9669..9730 +
1622815406.5698752-CDS-S-latissima_F_contig1037:11651..118281622815406.5698752-CDS-S-latissima_F_contig1037:11651..11828Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1037 11652..11828 +
1693924864.0825052-CDS-S-latissima_F_contig1037:11651..118281693924864.0825052-CDS-S-latissima_F_contig1037:11651..11828Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1037 11652..11828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1037.333.1

>prot_S-latissima_F_contig1037.333.1 ID=prot_S-latissima_F_contig1037.333.1|Name=mRNA_S-latissima_F_contig1037.333.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=218bp
MKESQGHSSSKRPAPSYHWEGFGRKNTKPPWFDCRVFDKERRDVGWVIKD
YGAPSVMDKPGRNGAAPFVHSADSRLYRPTVPFEGSLSVEVPATPSSRVM
VPRDVEAAGSKGKLVAMKEASRHSHMQMLANLHASRRSELRETIIGRGAS
IKKALLYPQTVTHQQALNLEKKAGPSLPFDAVPPPPSNRRASRLEPLNQH
MYLPYSRTRADFPGLAQ*
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mRNA from alignment at S-latissima_F_contig1037:7539..11828+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1037.333.1 ID=mRNA_S-latissima_F_contig1037.333.1|Name=mRNA_S-latissima_F_contig1037.333.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=4290bp|location=Sequence derived from alignment at S-latissima_F_contig1037:7539..11828+ (Saccharina latissima SLPER63f female)
ATGAAGGAGTCGCAAGGACACAGCAGCAGTAAGAGGCCTGCACCGTCGTA
TCACTGGGAAGGTTTCGGGAGGAAGAACACGAAGCCGCCATGGTTTGATT
GCCGAGTCTTCGACAAAGAACGGAGAGACGTGGGATGGGTAATCAAAGAC
TACGGCGCGCCATCGGTGATGGATAAGGTGTGTACTACGTACGAGGTATA
TACAGCGCAGTAAGCACTCAGCTGCACTGCTAAGTACTCGTATTTATGCT
GGTCTTTCGCTCAAGTTGAGCTCGTGGTATGTACGTACGATATTGCCGTT
GTAGTTTCTTATGGTGCACTGCGCAACACACTCGTCGGAAACACCCAGTA
CTTGGGAGTTCGTACGTATTAGTAGTACTCGTAGCACTTTCCTGTGTTTG
TGCAACATTCGTCATTATTGGCAGCATTCGGCACGTTCTGGCAAGCAAGC
GATCGGGGGGCTCGCGGGAGAGAGCGGTTTGACTGCCACTCTGGAACCCT
CGGTGATTGGTCAGGGTGGCCGTGTGCGTCATGTCCACGTCTGTATAGAA
ACACCTGGCAGAACAAAACCTCTGAGCTTAGTTATATTACTACTGTACTT
TTAGTAGGTCATTTTAATAGCCCTACCTGATACTATGTAGAGCTACGAAC
ATACGTAGCCTGAACTTCAGTCGGCACATAAGCAACCAAGTAATCGTCGT
GTTTTCCGTGTGCTGATCGTGCAGCAAACCGACACGAACGAGAACGGTAT
CTGGTTGGAAAGAGCGACTTATTGTACAGCCGGAAAACTGCAGTGAACGT
TAATTTCTAGCTCTAGCTGTACTACTGTTGTAGTGTAGCTCTAGCCCTAG
CCCTATGCTAGCCCTAGCCCTATGACAGCCCTAGAGCTACGAACGTAACT
CCAACATCAGCCGGTACCTGAGCAATCGTCGTGCTTTCCATGCTGATAAT
GTACTGGTACACATCCATCTACACAAGAGTAAAATGCCGCTGATTTTTCG
AACACGAAATGTGGTATGCGCTCGAACTACTTGCACCGGTCGGACACCCG
AAATCAACGTGTGATTAGCCAATGGTGTACCAGGATACTTCATGTACATG
TTGCAGCGAATATATACGATCGCGGAATGATTACAGTAACTAAACAAGCA
AATGCCTTCCCCATCGCCAAACTGACCACCAGCCTGGCAGGAATGGGGCC
GCGCCTTTCGTCCACAGTGCGGACTCTCGCCTGTACAGACCGACGGTGCC
ATTCGAAGGCAGCCTCAGTGTAGAGGTGCCGGCTACCCCGTCGTCCCGCG
TCATGGTGCCGCGAGATGTGGAAGCGGCCGGCAGCAAGGGGAAGCTGGTG
GCGATGAAGGAGGCGTCGCGGCATTCCCATATGCAGATGCTTGCTAATTT
GCACGCGTCCCGACGATCAGGTACTTTCCGCATCCCGACAGCATCCCGTT
CTCTCTCTAAATATTTCTCTCTCTCTATCGTGTTATCTCTCTCCTGCTCC
CTCCCTCTCTCTCTTTCTTTCCCGCTCGCCCTCTCTCTCCCTCTCTCTCT
GTATCTCTCTCAAGCTGTTTTGCGTGAGCTTGTTGACTGCCTGACGGTAG
AAACACGACAAACTACAGTAGTTGCCCCTCGTCTGAGTCAGCGGAGGCGG
CTTTATTTCGTCATGCGACATATATACACTGCTTCGTACTGTAGTGTTCC
AAAGCTGTGCTTTGTAGGGCATATTCTCTGGGGTACCCGGGTACGATCCT
TTTTTTTTTCAAACTCGGCTACATACCCGGATACCCCCAGAATCATACTC
GGGTATGTACCCGGGTATCGCCCGGATCATACTCGGATGTGTCACCGGGT
ACCCCCTGGATCATACCCGGGTACCCCCTGGATCATACTCGGGTATATAC
TCGGGTATCCACAGGACCATACTCGGGTATATACCCGGGTACCCCCAGAG
TAGACTTGTATACCCTACCATACTTTTCACGCTCTTCTAGGTCTCTAACG
CAGGGGGGCTACCGTTGAGGGAGTGCCGTCTGTGTGGTCGAGCGCCTGAT
TCGCCAGACAGACCCGCGAAATCTTTATGCTGAAGCGATCCAACTGACTC
CCCCTACTCGCACATATGATACGCCACCAGAACTGCGTGAGACAATTATC
GGGCGGGGAGCAAGCATAAAGAAGGCCCTTCTCTACCCTCAGGTGATAAA
TGCATTGAACTGCCACTGCTGCGCTGTTTCCGTTGAAGTACAAAAAAAAG
GTCCGAGAAACAGAGTTCGTCGTAGGTGATCGTGCCACGGCCATGCGCCT
GGTTTCATCACAGCTATCACTCTGGCCATAAATCTAAGGATATTTTAAGC
ATTCGTATTAATGATCGAATAGTCCTTACATCTCCGAAGAGAATGCTACC
AGAGGGAATGGTTCGGGATATATACCGGGAGGCACTTTTTTTTTTTTTTT
TGTCCATCTCATTTATTATCTTCGCCCTTCTTTTCTCTCTCCCTCTTTAG
TCATAACTCAGATCCGGGGTCACGAAGTAGACTCTCCCCCCCCCCTCCCC
ACTACGGTACGTGCCTTGCATTTTTATCGCGAGAAGATTTCAGCACTTTC
GTCCCTCGTCGACTTGCGTCGGATTCCGCACTGTAGCATGATATATATAT
ATATATACTTCGAACTACATATTGTGGACACGTGACACCCAGCTTTGACG
ATACGTTTGGAATCATATTTTTGTATACTAAACGTAACCCTTAGGCCCAC
ACTGGCTGTTCTGGGGAAAATAATGTTGGGGCTCTAGGAACATTTTTTTG
TTTTTGTCGAAAGTACGCCTTTCACTCGGCGGGACAGTAAAAAATCACCG
TTACACTCCTCAACAGCTACCCTGTGGTATTTCGAGGGCTTTCTGGGGCA
ACTGTCCGTTTTCGTGGGGTGTCAGATTGATTTGACGTGCAACCAATCAG
TTTTCTCAGGAGGGTCTTATTGATGCTCGTTCCGCCAGAACTGAGGCCAG
AAGTTACATGGATTATTTTTTATGATTTTTGGTAAAAACAAAATCCATGA
CCTCAAAACTGGCAACATGGACAAACAGTAAAAAACTACGACTTTAAAGA
AACGGAAAACTTCCCCCAGAAAGCTCTCGGAAAACTCCGGGAAGCATCCT
GAGGAGTCTGCCGATGGTTTCGGCCGTCCCGCCAAGTACTACGCGTATTT
TCGACCTGAAAACTCAGTTCCTGGCACCCAAAAGTATGTTTCCATGATAG
TTGGTCGAACCCTGTAAACCCTAAAATCCCGATCGCCTGGAAATAAGATG
AAACGAGGAACCAGTGTGCACTGTCAACAATTTTGTCGAAACTAACTACT
GTGGCTCCCAGCTGGCCATACCACAGCGTCGCTTCCTTTTCAATGCTGAG
CAGTGTTGCTGAACCTAAAAATATTATCAAAGCTGACTCCTCCTTCTGAA
AACTAAAGAGAATGCTGAGCAGTTGCTGAGACTAGAGAGTATCTCATAGC
TGACGTTATACTTGTGGCGCTCCTCAACGCTGCTGGATTCCTGTGGTGTG
GCGTTCCTCGTCGCTATAAACGAGCTGGACACCAAAGCACCCCCTCAGCG
GTGCACGACGACTCACCACGTACCTACCGATGCAAAACACACGCGATACA
CTCCGCTGTGATATCCGTTGGCTGGATGTTAGCCCCACCGGCGCGCCTAG
CGTTATCCCTCTTCTTGCTCAGCTACAGCACATAATACGCAGTCCGGTCA
TTTATTCGCGTTCTTCTCTTAGTATAACCGGTTCGCACGACATGTCTCAA
CCTTTTCCACCAATCTCCCTATCCTTACACCATCACCCTCCCCGACCATC
GCGCCAATAACGAGCGGATTTCCCTTCCCCCTCGCATCCCATTTTGTTTT
TTTTCCACATTTTCAGCCCAGCCCAGTCTGATCCAGGCATGACTCTCGCA
TGTTTTTTTTCAAATTACGGATTTGTTTTTTTCGAGAGTACCAACCACTC
AACCATCGGTCGAACTCCCAGCTGACGTACATCTGTAGCAGTTTTATAAA
GTAACTTCCCACGTGCATCGCCATCTCTCGCCTCTCTCTCTCTCGCGCGC
GCACGCCCTCCAGACCGTGACGCACCAACAGGCTCTCAACCTGGAGAAAA
AGGCGGGACCAAGCCTCCCATTCGACGCCGTGCCGCCACCCCCTTCCAAC
AGAAGAGCGAGCCGCCTCGAGCCGTTGAATCAGCACATGTACCTGCCCTA
CTCCAGGACGAGGGCGGACTTTCCGGGCCTCGCGCAATGA
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Coding sequence (CDS) from alignment at S-latissima_F_contig1037:7539..11828+

>mRNA_S-latissima_F_contig1037.333.1 ID=mRNA_S-latissima_F_contig1037.333.1|Name=mRNA_S-latissima_F_contig1037.333.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1308bp|location=Sequence derived from alignment at S-latissima_F_contig1037:7539..11828+ (Saccharina latissima SLPER63f female)
ATGAAGGAGTCGCAAGGACACAGCAGCAGTAAGAGGCCTGCACCGTCGTA
TCACTGGGAAGGTTTCGGGAGGAAGAACACGAAGCCGCCATGGTTTGATT
GCCGAGTCTTCGACAAAGAACGGAGAGACGTGGGATGGGTAATCAAAGAC
TACGGCGCGCCATCGGTGATGGATAAGATGAAGGAGTCGCAAGGACACAG
CAGCAGTAAGAGGCCTGCACCGTCGTATCACTGGGAAGGTTTCGGGAGGA
AGAACACGAAGCCGCCATGGTTTGATTGCCGAGTCTTCGACAAAGAACGG
AGAGACGTGGGATGGGTAATCAAAGACTACGGCGCGCCATCGGTGATGGA
TAAGCCTGGCAGGAATGGGGCCGCGCCTTTCGTCCACAGTGCGGACTCTC
GCCTGTACAGACCGACGGTGCCATTCGAAGGCAGCCTCAGTGTAGAGGTG
CCGGCTACCCCGTCGTCCCGCGTCATGGTGCCGCGAGATGTGGAAGCGGC
CGGCAGCAAGGGGAAGCTGGTGGCGATGAAGGAGGCGTCGCGGCATTCCC
ATATGCAGATGCTTGCTAATTTGCACGCGTCCCGACGATCAGCCTGGCAG
GAATGGGGCCGCGCCTTTCGTCCACAGTGCGGACTCTCGCCTGTACAGAC
CGACGGTGCCATTCGAAGGCAGCCTCAGTGTAGAGGTGCCGGCTACCCCG
TCGTCCCGCGTCATGGTGCCGCGAGATGTGGAAGCGGCCGGCAGCAAGGG
GAAGCTGGTGGCGATGAAGGAGGCGTCGCGGCATTCCCATATGCAGATGC
TTGCTAATTTGCACGCGTCCCGACGATCAGAACTGCGTGAGACAATTATC
GGGCGGGGAGCAAGCATAAAGAAGGCCCTTCTCTACCCTCAGAACTGCGT
GAGACAATTATCGGGCGGGGAGCAAGCATAAAGAAGGCCCTTCTCTACCC
TCAGACCGTGACGCACCAACAGGCTCTCAACCTGGAGAAAAAGGCGGGAC
CAAGCCTCCCATTCGACGCCGTGCCGCCACCCCCTTCCAACAGAAGAGCG
AGCCGCCTCGAGCCGTTGAATCAGCACATGTACCTGCCCTACTCCAGGAC
GAGGGCGGACTTTCCGGGCCTCGCGCAATGAACCGTGACGCACCAACAGG
CTCTCAACCTGGAGAAAAAGGCGGGACCAAGCCTCCCATTCGACGCCGTG
CCGCCACCCCCTTCCAACAGAAGAGCGAGCCGCCTCGAGCCGTTGAATCA
GCACATGTACCTGCCCTACTCCAGGACGAGGGCGGACTTTCCGGGCCTCG
CGCAATGA
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