mRNA_S-latissima_F_contig986.17572.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig986.17572.1
Unique NamemRNA_S-latissima_F_contig986.17572.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig986.17572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig986contigS-latissima_F_contig986:16464..16737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817385.2105486-CDS-S-latissima_F_contig986:16463..165181622817385.2105486-CDS-S-latissima_F_contig986:16463..16518Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig986 16464..16518 -
1693926525.7337902-CDS-S-latissima_F_contig986:16463..165181693926525.7337902-CDS-S-latissima_F_contig986:16463..16518Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig986 16464..16518 -
1622817385.2212594-CDS-S-latissima_F_contig986:16537..167371622817385.2212594-CDS-S-latissima_F_contig986:16537..16737Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig986 16538..16737 -
1693926525.746995-CDS-S-latissima_F_contig986:16537..167371693926525.746995-CDS-S-latissima_F_contig986:16537..16737Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig986 16538..16737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig986.17572.1prot_S-latissima_F_contig986.17572.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig986 16464..16737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig986.17572.1

>prot_S-latissima_F_contig986.17572.1 ID=prot_S-latissima_F_contig986.17572.1|Name=mRNA_S-latissima_F_contig986.17572.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=85bp
GAGGGGEHARNPPPGFAMTRLPSLGMSSPAAMGSTVTNGSGGVAREHRWM
DRGGGSEEDAAQLQQQDRGAEGEGQVAATLPRLAL
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mRNA from alignment at S-latissima_F_contig986:16464..16737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig986.17572.1 ID=mRNA_S-latissima_F_contig986.17572.1|Name=mRNA_S-latissima_F_contig986.17572.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=274bp|location=Sequence derived from alignment at S-latissima_F_contig986:16464..16737- (Saccharina latissima SLPER63f female)
GGGGCAGGCGGGGGTGGGGAGCACGCCCGCAACCCTCCCCCAGGGTTTGC
GATGACGAGGCTCCCTAGTTTGGGCATGTCGTCCCCGGCGGCGATGGGAT
CGACGGTCACCAACGGGAGCGGGGGCGTCGCCCGTGAGCACCGTTGGATG
GACAGGGGCGGCGGTAGCGAAGAAGATGCGGCGCAACTACAGCAGCAGGA
GCAACGGCAGCAGCAGGAGCAGGGGGGCAGAGGGGGAGGGGCAAGTCGCC
GCCACGTTGCCGCGACTAGCGCTA
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Coding sequence (CDS) from alignment at S-latissima_F_contig986:16464..16737-

>mRNA_S-latissima_F_contig986.17572.1 ID=mRNA_S-latissima_F_contig986.17572.1|Name=mRNA_S-latissima_F_contig986.17572.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=510bp|location=Sequence derived from alignment at S-latissima_F_contig986:16464..16737- (Saccharina latissima SLPER63f female)
GGGGCAGGCGGGGGTGGGGAGCACGCCCGCAACCCTCCCCCAGGGTTTGC
GATGACGAGGCTCCCTAGTTTGGGCATGTCGTCCCCGGCGGCGATGGGAT
CGACGGTCACCAACGGGAGCGGGGGCGTCGCCCGTGAGCACCGTTGGATG
GACAGGGGCGGCGGTAGCGAAGAAGATGCGGCGCAACTACAGCAGCAGGA
GGGGCAGGCGGGGGTGGGGAGCACGCCCGCAACCCTCCCCCAGGGTTTGC
GATGACGAGGCTCCCTAGTTTGGGCATGTCGTCCCCGGCGGCGATGGGAT
CGACGGTCACCAACGGGAGCGGGGGCGTCGCCCGTGAGCACCGTTGGATG
GACAGGGGCGGCGGTAGCGAAGAAGATGCGGCGCAACTACAGCAGCAGGA
CAGGGGGGCAGAGGGGGAGGGGCAAGTCGCCGCCACGTTGCCGCGACTAG
CGCTACAGGGGGGCAGAGGGGGAGGGGCAAGTCGCCGCCACGTTGCCGCG
ACTAGCGCTA
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