prot_S-latissima_F_contig941.17165.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig941.17165.1
Unique Nameprot_S-latissima_F_contig941.17165.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length360
Homology
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BLAST of mRNA_S-latissima_F_contig941.17165.1 vs. uniprot
Match: D7FHS8_ECTSI (SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS8_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 4.830e-10
Identity = 95/330 (28.79%), Postives = 125/330 (37.88%), Query Frame = 0 
Query:   10 SSRPSSPAAAV-FAELRKPLMLAWNVSLTPPPVEGKLELAAMIVDGADEDEKVGQTGRGVDTRVSDEPTESGVAADPGVISSDPSGERVGTLSKCADASVERDVGASGANVGTFGKRVGASAGGAGAAVHGGAGGRLPRGDGAEGDAVGLV--VRRLRTPAWARLVFADRKRILQVRVR--------------------------ASRARTAXXXXXXXXXXXXXXEEEPQIIDR---GREDSP------KIPSGPGVVNGEFSSXXXXXXXXXXXXAVMVVATARDEGGVGGDKRWERSVWYPRQCVLQAATQAGSFTDVARFLLDAPA 301
            +SR  + AA V F ELRKPL L+W V L P             + G    E  G+T   V  R +   T  G  A    +  +    R G + +  +    +D           G+R G   GG G +  GGA                     RR+R P WARLVFADRKRIL++RVR                          AS                   E+    I     GR+D        ++P+G    NG F++             VM       EG  G  +R    VW+PR C LQA++QAG F DV RF +DAP+
Sbjct: 1178 ASRHGTTAATVAFVELRKPLTLSWEVELGP-------------IVGVASAEAGGETAVAVAERETTPATPQGAEA----VGGEAVAARKGAVEEDEEGGGPKDT-----ETTAMGER-GGERGGLGESEAGGASXXXXXXXXXXXXXXXXSSECRRVRDPTWARLVFADRKRILRIRVRPCYPDQFAWHGDDSTAAASPAGATDRASPGENGGDPAPNKGRQSTRREDNAADIGMAVSGRQDQGGAATVLQVPNG--ASNGVFATNGYSGVAAEAAEGVMAKPGGVSEGEGGERRRQGTLVWHPRVCALQASSQAGVFEDVVRFSMDAPS 1482
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig941.17165.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHS8_ECTSI4.830e-1028.79SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig941contigS-latissima_F_contig941:71193..74210 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig941.17165.1mRNA_S-latissima_F_contig941.17165.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig941 71193..74212 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig941.17165.1 ID=prot_S-latissima_F_contig941.17165.1|Name=mRNA_S-latissima_F_contig941.17165.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=360bp
RVTGAKLRPSSRPSSPAAAVFAELRKPLMLAWNVSLTPPPVEGKLELAAM
IVDGADEDEKVGQTGRGVDTRVSDEPTESGVAADPGVISSDPSGERVGTL
SKCADASVERDVGASGANVGTFGKRVGASAGGAGAAVHGGAGGRLPRGDG
AEGDAVGLVVRRLRTPAWARLVFADRKRILQVRVRASRARTAAAAAAAAA
AAAAAKEEEPQIIDRGREDSPKIPSGPGVVNGEFSSKLLSGRGVVNGEAV
MVVATARDEGGVGGDKRWERSVWYPRQCVLQAATQAGSFTDVARFLLDAP
ALDVPTLPPPTPPSPPAAAPAQVAALADPVNGSSKDETHATESVTSDARQ
ADAEKGAGTG
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