mRNA_S-latissima_F_contig10.22.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig10.22.1
Unique NamemRNA_S-latissima_F_contig10.22.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig10.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig10contigS-latissima_F_contig10:809535..809892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size359
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815356.5780375-CDS-S-latissima_F_contig10:809534..8098461622815356.5780375-CDS-S-latissima_F_contig10:809534..809846Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig10 809535..809846 +
1693924821.7360938-CDS-S-latissima_F_contig10:809534..8098461693924821.7360938-CDS-S-latissima_F_contig10:809534..809846Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig10 809535..809846 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815356.5898833-UTR-S-latissima_F_contig10:809846..8098921622815356.5898833-UTR-S-latissima_F_contig10:809846..809892Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig10 809847..809892 +
1693924821.7953153-UTR-S-latissima_F_contig10:809846..8098921693924821.7953153-UTR-S-latissima_F_contig10:809846..809892Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig10 809847..809892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig10.22.1prot_S-latissima_F_contig10.22.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig10 809535..809846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig10.22.1

>prot_S-latissima_F_contig10.22.1 ID=prot_S-latissima_F_contig10.22.1|Name=mRNA_S-latissima_F_contig10.22.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=104bp
KVKTPSPPPPRTLYLWVLLLISYGSTLIFGLPCPWPCPREIILAKRFHLI
YGINAMSSPNVGGVSIRCVGAVPRLERGAWSMWANDSYGKQQMSTPPLPP
PGR*
back to top

mRNA from alignment at S-latissima_F_contig10:809535..809892+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig10.22.1 ID=mRNA_S-latissima_F_contig10.22.1|Name=mRNA_S-latissima_F_contig10.22.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=358bp|location=Sequence derived from alignment at S-latissima_F_contig10:809535..809892+ (Saccharina latissima SLPER63f female)
AAGGTAAAAACCCCATCCCCCCCCCCCCCCCGCACGCTTTATTTGTGGGT
GTTGTTACTTATTTCCTACGGGTCCACACTTATTTTCGGCCTTCCTTGTC
CCTGGCCCTGCCCTCGAGAGATAATATTAGCAAAGCGTTTCCATCTAATA
TATGGAATCAACGCAATGAGCTCCCCGAATGTTGGAGGTGTCTCTATTAG
GTGTGTAGGAGCGGTGCCCCGTCTCGAAAGGGGTGCGTGGTCAATGTGGG
CAAATGACTCATATGGCAAGCAACAAATGAGTACGCCCCCCCTCCCCCCG
CCTGGTCGGTGAAAACCCGACATGCCCCGTCCCGGCATTGTAGGGATGCG
AGGGTCTA
back to top

Coding sequence (CDS) from alignment at S-latissima_F_contig10:809535..809892+

>mRNA_S-latissima_F_contig10.22.1 ID=mRNA_S-latissima_F_contig10.22.1|Name=mRNA_S-latissima_F_contig10.22.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=624bp|location=Sequence derived from alignment at S-latissima_F_contig10:809535..809892+ (Saccharina latissima SLPER63f female)
AAGGTAAAAACCCCATCCCCCCCCCCCCCCCGCACGCTTTATTTGTGGGT
GTTGTTACTTATTTCCTACGGGTCCACACTTATTTTCGGCCTTCCTTGTC
CCTGGCCCTGCCCTCGAGAGATAATATTAGCAAAGCGTTTCCATCTAATA
TATGGAATCAACGCAATGAGCTCCCCGAATGTTGGAGGTGTCTCTATTAG
GTGTGTAGGAGCGGTGCCCCGTCTCGAAAGGGGTGCGTGGTCAATGTGGG
CAAATGACTCATATGGCAAGCAACAAATGAGTACGCCCCCCCTCCCCCCG
CCTGGTCGGTGAAAGGTAAAAACCCCATCCCCCCCCCCCCCCCGCACGCT
TTATTTGTGGGTGTTGTTACTTATTTCCTACGGGTCCACACTTATTTTCG
GCCTTCCTTGTCCCTGGCCCTGCCCTCGAGAGATAATATTAGCAAAGCGT
TTCCATCTAATATATGGAATCAACGCAATGAGCTCCCCGAATGTTGGAGG
TGTCTCTATTAGGTGTGTAGGAGCGGTGCCCCGTCTCGAAAGGGGTGCGT
GGTCAATGTGGGCAAATGACTCATATGGCAAGCAACAAATGAGTACGCCC
CCCCTCCCCCCGCCTGGTCGGTGA
back to top