mRNA_S-latissima_F_contig1076.640.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1076.640.1
Unique NamemRNA_S-latissima_F_contig1076.640.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
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BLAST of mRNA_S-latissima_F_contig1076.640.1 vs. uniprot
Match: D7FQV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV9_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 4.400e-12
Identity = 53/95 (55.79%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 VTKTPGRLPRRLHQGVNKVKRAVGVGEFFPASGQVGPAGLGTPS-RTPRGSGSVGG-GGASSGGESTPHAAYFPSPRRSQPRSAPDTGGQDGDFS 279
            V +TPGRLPRRLHQGVNKVKRAVGVGE+ P SGQV PAG      RTPRG       GG  +G  ++ HA   PSPRR   R+     G DG+ S
Sbjct:  882 VIRTPGRLPRRLHQGVNKVKRAVGVGEYNPGSGQVMPAGGSAAGPRTPRGGXXXSSDGGFDTGATASVHA---PSPRRGFRRTG-SASGADGESS 972
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BLAST of mRNA_S-latissima_F_contig1076.640.1 vs. uniprot
Match: A0A6H5L2Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Z5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.080e-11
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 VTKTPGRLPRRLHQGVNKVKRAVGVGEFFPASGQVGPAGLGTPS-RTPRG 147
            V +TPGRLPRRLHQGVNKVKRAVGVGE+ P SGQ+ PAG      RTPRG
Sbjct: 1008 VVRTPGRLPRRLHQGVNKVKRAVGVGEYNPVSGQIMPAGGSAAGPRTPRG 1057
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1076.640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQV9_ECTSI4.400e-1255.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2Z5_9PHAE2.080e-1174.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1076contigS-latissima_F_contig1076:42641..43493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size419
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815456.7743816-CDS-S-latissima_F_contig1076:42640..427171622815456.7743816-CDS-S-latissima_F_contig1076:42640..42717Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1076 42641..42717 +
1693924893.231163-CDS-S-latissima_F_contig1076:42640..427171693924893.231163-CDS-S-latissima_F_contig1076:42640..42717Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1076 42641..42717 +
1622815456.7927403-CDS-S-latissima_F_contig1076:43152..434921622815456.7927403-CDS-S-latissima_F_contig1076:43152..43492Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1076 43153..43492 +
1693924893.2449405-CDS-S-latissima_F_contig1076:43152..434921693924893.2449405-CDS-S-latissima_F_contig1076:43152..43492Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1076 43153..43492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1076.640.1prot_S-latissima_F_contig1076.640.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1076 42641..43492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1076.640.1

>prot_S-latissima_F_contig1076.640.1 ID=prot_S-latissima_F_contig1076.640.1|Name=mRNA_S-latissima_F_contig1076.640.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=139bp
VTKTPGRLPRRLHQGVNKVKRAVGVGEFFPASGQVGPAGLGTPSRTPRGS
GSVGGGGASSGGESTPHAAYFPSPRRSQPRSAPDTGGQDGDFSGGGGGRH
GYTPAPPRTPSANDGLEAHHADGDAPVGVSGRSKRRTPR
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mRNA from alignment at S-latissima_F_contig1076:42641..43493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1076.640.1 ID=mRNA_S-latissima_F_contig1076.640.1|Name=mRNA_S-latissima_F_contig1076.640.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=853bp|location=Sequence derived from alignment at S-latissima_F_contig1076:42641..43493+ (Saccharina latissima SLPER63f female)
GTTACTAAGACCCCTGGGAGGTTGCCGAGGCGTCTCCATCAGGGGGTGAA
CAAGGTTAAGCGGGCGGTCGGAGTCGGGTAAGTGGTTTGGGTTAGTTTTT
TTTTTTGTTAGTTGGTTGGTCTGTTGCGGTAGTTGGTTGATTGGTTGGTT
GGATAGTTGGAAAGACTGCGCTTGTCACTTGTTCCTTTTTTGTTGTTCTT
CAAGGTGTTGTTTTGTGGAGTAGGTGCCGTTGGTACGCTGTGTGTTTTGA
GCGAGAAACTTGGCCGACTCAGGGCGGCAGGCACCACTTTCTTGCTATAT
TCGCACCAACTTTTACCTCCCCCGCGCGCGCCCCTCGCTCCAATCCAAAC
CTCTCAACCACCCTCGGTGTTTCCACGCACGTTGCTCCACTTTTTTTTTT
CTTTTTTTTTTCCTTTTGGTTTTTACCCCTTCACCTCCTTCCCCCCCTCG
TCTATTGTGTGATTTACGATTTACCTCTTAACTTTTCTGTACGTTTTTTT
TAAACACAACAGGGAATTCTTCCCGGCGAGCGGTCAGGTCGGGCCGGCGG
GGTTGGGTACACCATCACGAACCCCTCGCGGCAGCGGAAGCGTCGGTGGC
GGTGGCGCCAGCAGTGGAGGCGAAAGCACCCCGCACGCCGCCTACTTCCC
CTCTCCCAGGCGCTCACAGCCTCGGTCTGCCCCGGACACCGGAGGTCAGG
ACGGTGACTTCAGCGGTGGTGGTGGAGGGAGACACGGGTATACCCCAGCC
CCCCCGCGCACACCTAGTGCCAACGACGGCTTGGAAGCTCACCATGCCGA
CGGGGACGCGCCGGTGGGAGTTAGCGGGCGAAGCAAGAGGCGTACCCCGC
GAA
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Coding sequence (CDS) from alignment at S-latissima_F_contig1076:42641..43493+

>mRNA_S-latissima_F_contig1076.640.1 ID=mRNA_S-latissima_F_contig1076.640.1|Name=mRNA_S-latissima_F_contig1076.640.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=834bp|location=Sequence derived from alignment at S-latissima_F_contig1076:42641..43493+ (Saccharina latissima SLPER63f female)
GTTACTAAGACCCCTGGGAGGTTGCCGAGGCGTCTCCATCAGGGGGTGAA
CAAGGTTAAGCGGGCGGTCGGAGTCGGGTTACTAAGACCCCTGGGAGGTT
GCCGAGGCGTCTCCATCAGGGGGTGAACAAGGTTAAGCGGGCGGTCGGAG
TCGGGGAATTCTTCCCGGCGAGCGGTCAGGTCGGGCCGGCGGGGTTGGGT
ACACCATCACGAACCCCTCGCGGCAGCGGAAGCGTCGGTGGCGGTGGCGC
CAGCAGTGGAGGCGAAAGCACCCCGCACGCCGCCTACTTCCCCTCTCCCA
GGCGCTCACAGCCTCGGTCTGCCCCGGACACCGGAGGTCAGGACGGTGAC
TTCAGCGGTGGTGGTGGAGGGAGACACGGGTATACCCCAGCCCCCCCGCG
CACACCTAGTGCCAACGACGGCTTGGAAGCTCACCATGCCGACGGGGACG
CGCCGGTGGGAGTTAGCGGGCGAAGCAAGAGGCGTACCCCGCGAGGAATT
CTTCCCGGCGAGCGGTCAGGTCGGGCCGGCGGGGTTGGGTACACCATCAC
GAACCCCTCGCGGCAGCGGAAGCGTCGGTGGCGGTGGCGCCAGCAGTGGA
GGCGAAAGCACCCCGCACGCCGCCTACTTCCCCTCTCCCAGGCGCTCACA
GCCTCGGTCTGCCCCGGACACCGGAGGTCAGGACGGTGACTTCAGCGGTG
GTGGTGGAGGGAGACACGGGTATACCCCAGCCCCCCCGCGCACACCTAGT
GCCAACGACGGCTTGGAAGCTCACCATGCCGACGGGGACGCGCCGGTGGG
AGTTAGCGGGCGAAGCAAGAGGCGTACCCCGCGA
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