prot_S-latissima_F_contig999.17670.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig999.17670.1
Unique Nameprot_S-latissima_F_contig999.17670.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length653
Homology
BLAST of mRNA_S-latissima_F_contig999.17670.1 vs. uniprot
Match: A0A6H5KHR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR5_9PHAE)

HSP 1 Score: 662 bits (1707), Expect = 1.750e-229
Identity = 352/534 (65.92%), Postives = 404/534 (75.66%), Query Frame = 0
Query:  113 GVLPLPKIPFCRAGADVVNIWLPVWDPDNQVVETAKRVVVFGGKGVDYYTSRADNQLSYLSDMWALHITNTGFRWNKVTPHGDLRPSPRWQTGRAVAFDQSLVIYGGDDQTTNEVGGLGDLWVYSPWASRTNVHAEGGPIA-------DEWENYDRRGDKPGERRNPSMAMVNSTLLMLGGKVVNGEMNEQCDSRLFLLDLEDPDGKWREGTSFPGECGLGQTMNTVKIPR----DEEEEVRAVVFGGCQWDSNGKFACSNNLHAYDLEGDVWEEISPKSDADANACTGDSDIDPKGAGSLNRNVTKTDVSDISAATPSXXXXXTIATXXXXXXXXXXXXXXXXXXXXX-------EPVVVCPGVSTPRPLGRHAHAAAYIESKVDSVNALFVFGGRENAEELAPLGDLWMFDFTVMRWLEVTPGS-KDAPANRFDHSLTVWKGGAGDGVASLVVFGGETIGRAGQTVYMNDVWLYTPHISEWREVSRSECQEGATGIIGGGQWTALLALVSLLSLVVVVQCLLHHICPHYEPP 627
            G++ LP +PFCRAGADV N+W+PVW+PD+Q+VETAKRVVVFGG+GVDYY  RAD+QLSYLSDMWALHITNTGFRWNKV P G + PS RWQTG +VA+  SLV+YGGDDQTTN++GGLGDLWV+SP  +R+ +HA     +        EW  Y R G  PGERR PS+ MVNSTLL+ GGKV +GE NE+CDSR FL+DL DP GKWREG SFPGECG+G TMNTV I      D E EVRAVVFGGC+   +G F+CSN+L+AYDL  + WEEI PKSDADA AC  D                  D  +  A  P+ XXXX    XXXXXXXXXXXXXXXXXXXXX       +   VCPGVST RPLGRHAHA+AYIESK D++NALF+FGGREN +EL PLGDLWMFDFT MRW E+TP S K AP NRF HSLTVW+GG GDGVASLVVFGGETI R GQTV+MNDVWLYTP    WR+VSRS+C+EGA+GI  GG WTAL+AL S+L LVVVVQC LH +CP Y+PP
Sbjct:   94 GMMQLPSVPFCRAGADVANMWMPVWNPDSQLVETAKRVVVFGGRGVDYYNKRADDQLSYLSDMWALHITNTGFRWNKVVPVGHVHPSARWQTGDSVAYGASLVVYGGDDQTTNQMGGLGDLWVFSPGGTRSRLHASEKDYSYDSLDRRSEWTEYSRAGKLPGERREPSLTMVNSTLLLQGGKVEDGESNERCDSRFFLVDLGDPQGKWREGPSFPGECGIGGTMNTVNITSKHTTDGENEVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEAD------------------DTGESPALRPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDKKKAVCPGVSTSRPLGRHAHASAYIESKTDNMNALFIFGGRENMDELTPLGDLWMFDFTTMRWREITPDSNKPAPCNRFYHSLTVWQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWRQVSRSDCKEGASGIARGGNWTALIALASMLVLVVVVQCFLHRVCPQYQPP 609          
BLAST of mRNA_S-latissima_F_contig999.17670.1 vs. uniprot
Match: D7G1X6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X6_ECTSI)

HSP 1 Score: 564 bits (1453), Expect = 5.620e-195
Identity = 282/481 (58.63%), Postives = 327/481 (67.98%), Query Frame = 0
Query:  114 VLPLPKIPFCRAGADVVNIWLPVWDPDNQVVETAKRVVVFGGKGVDYYTSRADNQLSYLSDMWALHITNTGFRWNKVTPHGDLRPSPRWQTGRAVAFDQSLVIYGGDDQTTNEVGGLGDLWVYSPWASRTNVHA-------EGGPIADEWENYDRRGDKPGERRNPSMAMVNSTLLMLGGKVVNGEMNEQCDSRLFLLDLEDPDGKWREGTSFPGECGLGQTMNTVKIPR----DEEEEVRAVVFGGCQWDSNGKFACSNNLHAYDLEGDVWEEISPKSDADANACTGDSDIDPKGAGSLNRNVTKTDVSDISAATPSXXXXXTIATXXXXXXXXXXXXXXXXXXXXXEPVVVCPGVSTPRPLGRHAHAAAYIESKVDSVNALFVFGGRENAEELAPLGDLWMFDFTVMRWLEVTPGSKD-APANRFDHSLTVWKGGAGDGVASLVVFGGETIGRAGQTVYMNDVWLYTPHISEWREVSRS 582
            ++ LP++PFCRAGADV N+W+PVW+PD+Q+VETAKRVVVFGG+GVDYY  RAD+QLSYLSDMWALHITNTGFRWNKV P G +RPS RWQTG +VA+  SLV+YGGDDQTTN+VGGLGDLWV+SP  SR+ +HA       +      EW  Y R G  PGERR PS+AMVNSTLL+ GGK+ +GE NE+CDSR FL+DL DP G+WREG SFPGECG+G TM+TV I R    D E EVRAVVFGGC+   +G F+CSN+L+AYDL  + WEEI PKSDADA AC  D                                                                    +   P  RH HA+AYIESK D++NALF+FGGREN ++L PLGDLWMFDFT MRW E+TP SK  AP NRF HSLTVW+GG GDGVASLVVFGGETI R GQTV+MNDVWLYTP    WREV  S
Sbjct:    1 MMQLPRVPFCRAGADVANMWMPVWNPDSQLVETAKRVVVFGGRGVDYYDKRADDQLSYLSDMWALHITNTGFRWNKVVPIGQVRPSARWQTGDSVAYGASLVVYGGDDQTTNQVGGLGDLWVFSPRGSRSRLHASEKDYSYDASDRRSEWTEYRRTGKLPGERREPSLAMVNSTLLLQGGKMEDGESNERCDSRFFLVDLGDPQGEWREGPSFPGECGIGGTMDTVNITRKHTADGENEVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADD-------------------------------------------------------------------TGESPALRHGHASAYIESKTDNMNALFIFGGRENMDDLTPLGDLWMFDFTTMRWSEITPDSKKPAPCNRFYHSLTVWQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWREVRSS 414          
BLAST of mRNA_S-latissima_F_contig999.17670.1 vs. uniprot
Match: A0A7S2CA30_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CA30_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 9.350e-11
Identity = 52/163 (31.90%), Postives = 80/163 (49.08%), Query Frame = 0
Query:  464 PLGRHAHAAAYIESKVDSVNALFVFGGRENAE-ELAPLGDLWMFDFTVMRWLEVTPGSKDAPANRFDHSLTVWKGGAGDGVASLVVFGGETI--------GRAGQTVYMNDVWLYTPHISEWREVSRSECQEGATGIIGG----GQWTALLALVSLLSLVVVV 613
            PL R  HA  + ++      +L+VFGGR +A+ + + L DLW +  ++  W  + P     P  R+ HS+            +LV FGGE I        G+ G  V +ND+W+Y+P ++ W +VS   C  G TG+I      G  T LL L  L S  +++
Sbjct:  117 PLARDHHAMTFDKATA----SLYVFGGRAHADMDHSALNDLWRYSVSLNEWTCLQPHGT-LPRTRYLHSMVALNN-------NLVAFGGEHIKSHQPKNGGKKGD-VKLNDLWMYSPSLNRWSQVSSDGCMAGETGLIYQTSIEGIMTMLLVLSVLFSAALIL 266          
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig999.17670.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KHR5_9PHAE1.750e-22965.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1X6_ECTSI5.620e-19558.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CA30_9STRA9.350e-1131.90Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015915Kelch-type beta propellerGENE3D2.120.10.80coord: 409..594
e-value: 1.1E-10
score: 42.8
IPR015915Kelch-type beta propellerGENE3D2.120.10.80coord: 135..392
e-value: 5.2E-9
score: 37.5
IPR015915Kelch-type beta propellerSUPERFAMILY117281Kelch motifcoord: 151..581
NoneNo IPR availablePANTHERPTHR23244KELCH REPEAT DOMAINcoord: 64..287
coord: 325..590
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 34..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..21
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 597..621
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 22..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..596
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..37
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 622..653
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..37
score: 0.522

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig999contigS-latissima_F_contig999:99158..142871 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig999.17670.1mRNA_S-latissima_F_contig999.17670.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig999 99158..142966 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig999.17670.1 ID=prot_S-latissima_F_contig999.17670.1|Name=mRNA_S-latissima_F_contig999.17670.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=653bp
METQQWSTATKRRLPSVTPGRTATLLLLAGALCSARATSMRSAPSPDANP
AIPAAGAGASAAAAASAADRARRLREHSASSVGGASIGGSSSGSGERGGG
GGGGKGGGGERDGVLPLPKIPFCRAGADVVNIWLPVWDPDNQVVETAKRV
VVFGGKGVDYYTSRADNQLSYLSDMWALHITNTGFRWNKVTPHGDLRPSP
RWQTGRAVAFDQSLVIYGGDDQTTNEVGGLGDLWVYSPWASRTNVHAEGG
PIADEWENYDRRGDKPGERRNPSMAMVNSTLLMLGGKVVNGEMNEQCDSR
LFLLDLEDPDGKWREGTSFPGECGLGQTMNTVKIPRDEEEEVRAVVFGGC
QWDSNGKFACSNNLHAYDLEGDVWEEISPKSDADANACTGDSDIDPKGAG
SLNRNVTKTDVSDISAATPSPTPSPTIATTSTTKTTDDAKSSSSSSSSSS
EPVVVCPGVSTPRPLGRHAHAAAYIESKVDSVNALFVFGGRENAEELAPL
GDLWMFDFTVMRWLEVTPGSKDAPANRFDHSLTVWKGGAGDGVASLVVFG
GETIGRAGQTVYMNDVWLYTPHISEWREVSRSECQEGATGIIGGGQWTAL
LALVSLLSLVVVVQCLLHHICPHYEPPLRRRRHRRRTEDGRLVRHSSLRE
AMV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015915Kelch-typ_b-propeller