prot_S-latissima_F_contig995.17644.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig995.17644.1
Unique Nameprot_S-latissima_F_contig995.17644.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length251
Homology
BLAST of mRNA_S-latissima_F_contig995.17644.1 vs. uniprot
Match: A0A6H5JU59_9PHAE (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU59_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 1.290e-78
Identity = 139/211 (65.88%), Postives = 160/211 (75.83%), Query Frame = 0
Query:    1 MAAEEAKVVGSMPPPPAYYKLFAPGAAGPESNGELELATAPAAXXXXXXXXXXXXXXXXAAGASNAFPLEPPPPPGPSDTYKMFGMPYSSEPIAEELLPPEKMVVPPSDQSIDFRVELKALLNSIMANYGQFMEMLVSSPSHAHEKLSDVETLFVNFHTLLNRYRAHQARHLILQRLRQQAEENAEVMSSLEAAMLECASAQNRAKACLSL 211
            MA EEAKVV ++PPPPAYYKLF+PGA+     G+   A+A  A                   A N FPL+PP PPGP +TY+MFGMPYSSEP+ +ELLPPEK+VVP S Q+IDFR  LK LLNSIMANYGQFMEMLVSSP+ AHEKLSDVETLFVNFH+LLNRYRAHQARH++L+RLR QAEEN  VMS+LEAAM +C SAQ  A +CL L
Sbjct:    1 MATEEAKVVDAVPPPPAYYKLFSPGAS---LTGQDVGASAAIAAPGDSAGGAGGT-------APNEFPLQPPRPPGPGETYRMFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAGLKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAEENDAVMSTLEAAMHQCTSAQESAFSCLGL 201          
BLAST of mRNA_S-latissima_F_contig995.17644.1 vs. uniprot
Match: D8LAU4_ECTSI (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU4_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 1.670e-60
Identity = 111/160 (69.38%), Postives = 128/160 (80.00%), Query Frame = 0
Query:   83 MFGMPYSSEPIAEELLPPEKMVVPPSDQSIDFRVELKALLNSIMANYGQFMEMLVSSPSHAHEKLSDVETLFVNFHTLLNRYRAHQARHLILQRLRQQAEENAEVMSSLEAAMLECASAQNRAKACLSLS-NGAVGDA------AREAGDPMDLADVLAG 235
            MFGMPYSSEP+ +ELLPPEK+VVP S Q+IDFR ELK LLNSIMANYGQFMEMLVSSP+ AHEKLSDVETLFVNFH+LLNRYRAHQARH++L+RLR QA+EN  VMS+LEAAM +C SAQ  A +CL L  NGA G A      AR+    MD+ + + G
Sbjct:    1 MFGMPYSSEPVEQELLPPEKIVVPASGQAIDFRAELKGLLNSIMANYGQFMEMLVSSPARAHEKLSDVETLFVNFHSLLNRYRAHQARHIVLERLRSQAKENDAVMSALEAAMHQCTSAQEGAFSCLGLQENGASGVAEGEGERARQGRVEMDVDETIGG 160          
BLAST of mRNA_S-latissima_F_contig995.17644.1 vs. uniprot
Match: A0A6U1QAX8_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QAX8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.510e-23
Identity = 53/123 (43.09%), Postives = 82/123 (66.67%), Query Frame = 0
Query:   74 PPGPSDTYKMFGMPYSSEPIAEELLPPEKMVVPPSDQ-SIDFRVELKALLNSIMANYGQFMEMLVSSPSHAHEKLSDVETLFVNFHTLLNRYRAHQARHLILQRLRQQAEENAEVMSSLEAAM 195
            PP P  +Y  FG+PYS+E     L+P EK + P  D    +FR E++ LL SIMANY Q +++L+  PS    K+ ++E LFVNFH++LN++R HQAR ++L RL++Q ++  + ++ LE+ M
Sbjct:   31 PPVPEGSYASFGIPYSAEAFIPTLVPDEKKLGPKQDDLDRNFRSEMQKLLQSIMANYVQLLDILIECPSQQSRKVEELEQLFVNFHSILNQFRQHQAREMVLVRLKRQKKDEQKALAMLESQM 153          
BLAST of mRNA_S-latissima_F_contig995.17644.1 vs. uniprot
Match: F0WF41_9STRA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WF41_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.060e-20
Identity = 65/215 (30.23%), Postives = 107/215 (49.77%), Query Frame = 0
Query:    7 KVVGSMPPPPAYYKLFAPGAAGPESNGELELATAPAAXXXXXXXXXXXXXXXXAAGASNAFPLEPPPPPGPSDTYKMFGMPYSSEPIAEELLPPEKMVV--------PPSDQSIDFRVELKALLNSIMANYGQFMEMLVSSPSHAHEKLSDVETLFVNFHTLLNRYRAHQARHLILQRLRQQAEENAEVMSSLEAAMLECASAQNRAKACLSLSN 213
            ++V   PPPPA++ L+           +++   APA                            PP P  P+  Y MFG PYS++ +  +LLP +   +         P+ Q+ID++ +LK L  S++AN  Q +++L+ +P   +EK+ D+E LFVN H L+N++R HQAR +I+Q LR Q EE    ++ +   ++E      RA + L + N
Sbjct:   11 EIVSEFPPPPAFFSLY-----------QIDDVNAPA----------------------------PPAPMAPN--YHMFGTPYSTKDVVPDLLPDDSKKLYLSDTSAQDPAPQAIDYKAQLKKLNRSLLANCIQLLDVLIRNPKVFNEKVDDLELLFVNMHNLINKFRPHQAREMIIQLLRGQIEEKQAAINDIRRVLIESREQVERAHSALDVDN 184          
BLAST of mRNA_S-latissima_F_contig995.17644.1 vs. uniprot
Match: A0A835YZG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZG8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.500e-12
Identity = 62/166 (37.35%), Postives = 91/166 (54.82%), Query Frame = 0
Query:    1 MAAEEAKVVGSMPPPPAYYKLFAPG--AAGPESNG---ELELATAPAAXXXXXXXXXXXXXXXXAAGASNAFPLEPPPPPGPSDTYKMFGMPYSSEPIAEELLPPEKMV--VPP-------SDQSIDFRVELKALLNSIMANYGQFMEMLVSSPS-HAHEKLSDVE 151
            + AEE KVV ++P PPAYYKLFA    AAG E +    +L+   +PAA                AA A     LEPPP P     Y M+G  Y  +   E LLP E+++   PP       SD +++F+ E++ LL+S+MANY Q +++L+ SPS HA + + +++
Sbjct:   72 LMAEETKVVSALPLPPAYYKLFAKRSEAAGAEDSTPAKDLDAQKSPAA----------------AADAEINL-LEPPPLPSVGGAYNMYGTAYKVDFELEYLLPREQILFGAPPEGTASSSSDLNLNFKDEMRRLLDSVMANYAQLLDVLMRSPSLHAQKAVLELQ 220          
BLAST of mRNA_S-latissima_F_contig995.17644.1 vs. uniprot
Match: A0A261Y1E2_9FUNG (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y1E2_9FUNG)

HSP 1 Score: 68.6 bits (166), Expect = 3.980e-10
Identity = 46/133 (34.59%), Postives = 68/133 (51.13%), Query Frame = 0
Query:   69 LEPPPPPGPSDTYKMFG--------MPYSSEPIAEELLPPEKMVVPPSDQSIDFRVELKALLNSIMANYGQFMEMLVSSPSHAHEKLSDVETLFVNFHTLLNRYRAHQARHLILQRLRQQAEENAEVMSSLEA 193
            LEPP P     +Y +F         +P  SE   E+L P         D  ID   ELK L +S++ NY Q +++LV +P     K+  + T+F+N H L+N YR HQAR +++  ++QQ E   +    LEA
Sbjct:   67 LEPPKPTFEDGSYSLFNQTWQIEDKLPSLSEMDVEQLYP---------DGPIDRIKELKKLNHSLVINYLQLLDLLVKNPQQFDTKVQHLRTIFINMHHLINEYRPHQAREILILLMQQQVERKRKATEQLEA 190          
BLAST of mRNA_S-latissima_F_contig995.17644.1 vs. uniprot
Match: L8GHV0_ACACA (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GHV0_ACACA)

HSP 1 Score: 65.9 bits (159), Expect = 3.500e-9
Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 0
Query:   80 TYKMFGMPYSSEPIAEELLP-PEKMVVPPSDQSIDFRVELKALLNSIMANYGQFMEMLVSSPSHA--HEKLSDVETLFVNFHTLLNRYRAHQARHLILQRLRQQ 180
            TY MFG P +++ + + L   P ++ + P  + I+ R ELK L +SI+ NY + +  LV++P     H+K++D+E LFVN H LLN +R HQAR  ++  L +Q
Sbjct:   41 TYSMFGRPLATQEVEDSLENHPGRVQLYPRGE-INHRRELKKLNHSILHNYLELLNTLVTNPHEYTFHDKVADLEQLFVNLHFLLNAFRPHQARETLISILAEQ 143          
BLAST of mRNA_S-latissima_F_contig995.17644.1 vs. uniprot
Match: A0A5M9JAI2_MONFR (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Monilinia fructicola TaxID=38448 RepID=A0A5M9JAI2_MONFR)

HSP 1 Score: 62.8 bits (151), Expect = 5.960e-8
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 0
Query:   69 LEPPPPPGPSDTYKMFGMPYSSE---PIAEELLPPEKMVVPPSDQSI-----DFRVELKALLNSIMANYGQFMEMLVSSPSHAHEKLSDVETLFVNFHTLLNRYRAHQARHLIL 174
            L+PP PP  S +Y+  G  +  +   P  EE    E++  PP   +      D  + LK +  S++ NY + + ++  +P  +HEK+SD+ TLFVNFH LLN YR HQAR  ++
Sbjct:   72 LQPPEPPT-SGSYRTLGQIHKIKDELPTLEES-EVERLYTPPDTPTGTGTHGDRALILKRIAKSLLLNYLELVGIMSINPEQSHEKISDLNTLFVNFHHLLNEYRPHQARESLI 183          
BLAST of mRNA_S-latissima_F_contig995.17644.1 vs. uniprot
Match: A0A5M9J856_MONFR (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Monilinia fructicola TaxID=38448 RepID=A0A5M9J856_MONFR)

HSP 1 Score: 62.8 bits (151), Expect = 8.110e-8
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 0
Query:   69 LEPPPPPGPSDTYKMFGMPYSSE---PIAEELLPPEKMVVPPSDQSI-----DFRVELKALLNSIMANYGQFMEMLVSSPSHAHEKLSDVETLFVNFHTLLNRYRAHQARHLIL 174
            L+PP PP  S +Y+  G  +  +   P  EE    E++  PP   +      D  + LK +  S++ NY + + ++  +P  +HEK+SD+ TLFVNFH LLN YR HQAR  ++
Sbjct:   72 LQPPEPPT-SGSYRTLGQIHKIKDELPTLEES-EVERLYTPPDTPTGTGTHGDRALILKRIAKSLLLNYLELVGIMSINPEQSHEKISDLNTLFVNFHHLLNEYRPHQARESLI 183          
BLAST of mRNA_S-latissima_F_contig995.17644.1 vs. uniprot
Match: A0A5N6JY34_MONLA (Mediator of RNA polymerase II transcription subunit 7 n=2 Tax=Monilinia laxa TaxID=61186 RepID=A0A5N6JY34_MONLA)

HSP 1 Score: 62.8 bits (151), Expect = 9.740e-8
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 0
Query:   69 LEPPPPPGPSDTYKMFGMPYSSE---PIAEELLPPEKMVVPPSDQSI-----DFRVELKALLNSIMANYGQFMEMLVSSPSHAHEKLSDVETLFVNFHTLLNRYRAHQARHLIL 174
            L+PP PP  S +Y+  G  +  +   P  EE    E++  PP   +      D  + LK +  S++ NY + + ++  +P  +HEK+SD+ TLFVNFH LLN YR HQAR  ++
Sbjct:   72 LQPPEPPT-SGSYRTLGQIHKIKDELPTLEES-EVERLYTPPDTPTGTGTHGDRALILKRIAKSLLLNYLELVGIMSINPEQSHEKISDLNTLFVNFHHLLNEYRPHQARESLI 183          
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig995.17644.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JU59_9PHAE1.290e-7865.88Mediator of RNA polymerase II transcription subuni... [more]
D8LAU4_ECTSI1.670e-6069.38Mediator of RNA polymerase II transcription subuni... [more]
A0A6U1QAX8_9STRA3.510e-2343.09Mediator of RNA polymerase II transcription subuni... [more]
F0WF41_9STRA2.060e-2030.23Mediator of RNA polymerase II transcription subuni... [more]
A0A835YZG8_9STRA4.500e-1237.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A261Y1E2_9FUNG3.980e-1034.59Mediator of RNA polymerase II transcription subuni... [more]
L8GHV0_ACACA3.500e-939.42Mediator of RNA polymerase II transcription subuni... [more]
A0A5M9JAI2_MONFR5.960e-836.84Mediator of RNA polymerase II transcription subuni... [more]
A0A5M9J856_MONFR8.110e-836.84Mediator of RNA polymerase II transcription subuni... [more]
A0A5N6JY34_MONLA9.740e-836.84Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 174..194
NoneNo IPR availablePANTHERPTHR21428FAMILY NOT NAMEDcoord: 4..210
IPR009244Mediator complex, subunit Med7PFAMPF05983Med7coord: 12..199
e-value: 1.8E-32
score: 113.0
IPR037212Mediator complex, subunit Med7/Med21-likeSUPERFAMILY140718Mediator hinge subcomplex-likecoord: 111..199

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig995contigS-latissima_F_contig995:26447..32008 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig995.17644.1mRNA_S-latissima_F_contig995.17644.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig995 26408..32008 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig995.17644.1 ID=prot_S-latissima_F_contig995.17644.1|Name=mRNA_S-latissima_F_contig995.17644.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=251bp
MAAEEAKVVGSMPPPPAYYKLFAPGAAGPESNGELELATAPAAAGAAAGA
AGAETGGGVAAGASNAFPLEPPPPPGPSDTYKMFGMPYSSEPIAEELLPP
EKMVVPPSDQSIDFRVELKALLNSIMANYGQFMEMLVSSPSHAHEKLSDV
ETLFVNFHTLLNRYRAHQARHLILQRLRQQAEENAEVMSSLEAAMLECAS
AQNRAKACLSLSNGAVGDAAREAGDPMDLADVLAGERGGLEVADSSNSSS
G
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009244Mediatior_Med7
IPR037212Med7/Med21-like