prot_S-latissima_F_contig990.17616.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-latissima_F_contig990.17616.1
Unique Name	prot_S-latissima_F_contig990.17616.1
Type	polypeptide
Organism	Saccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length	224

Homology

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BLAST of mRNA_S-latissima_F_contig990.17616.1 vs. uniprot
Match: A0A6H5L154_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L154_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.450e-19
Identity = 69/173 (39.88%), Postives = 85/173 (49.13%), Query Frame = 0

Query:   31 LWSYALAEAIPKSRQRLHLSPQEAGTGSSEXXXXXXXXXXXXXXXXXXSASFRVDATLAARLSDESVSRGVPLASILMSSLFLAAAKTVRLEQEGPSHGSRQNKPM----------GVRAQRGFVLGIVCLVMALLSGSAESKAMRYFCSIYAVVAG------EYTVPCSSMP 187
            L+ Y LAE  P +RQRL LSP      +S                   SA+  +D    ARL  E  SRGVPL S L++SL+LAAA+ V  E + P   S  N              VR QR  VLG+V +VMALLSGS + K +RYFCS YA          ++ V CSS P
Sbjct:   16 LFGYVLAEFPPATRQRLDLSPCSPLFDASNNNLSIINSGRC-------SAAVAIDTETTARLRGECSSRGVPLESALLASLYLAAARAVGEEGKFPRVASEGNGVHEGNIPRRTNDAVRLQRALVLGVVSVVMALLSGSVDGKILRYFCSFYAAPGPSTSSPWKHRVSCSSWP 181

The following BLAST results are available for this feature:

BLAST of mRNA_S-latissima_F_contig990.17616.1 vs. uniprot

BLAST of mRNA_S-latissima_F_contig990.17616.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5L154_9PHAE	2.450e-19	39.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 120..138
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 101..119
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..100
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 139..156
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 157..224
None	No IPR available	TMHMM	TMhelix		coord: 143..160

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-latissima_F_contig990	contig	S-latissima_F_contig990:107351..108022 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Saccharina latissima female	2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90	2022-09-16
OGS1.0 of Saccharina latissima SLPER63f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-latissima_F_contig990.17616.1	mRNA_S-latissima_F_contig990.17616.1	Saccharina latissima SLPER63f female	mRNA	S-latissima_F_contig990 107351..108022 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-latissima_F_contig990.17616.1 ID=prot_S-latissima_F_contig990.17616.1|Name=mRNA_S-latissima_F_contig990.17616.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=224bp
VAVCATQPAASTRGAMSTAAVVASARLRLCLWSYALAEAIPKSRQRLHLS
PQEAGTGSSECSSSNSSSNSNSNGNSGSSASFRVDATLAARLSDESVSRG
VPLASILMSSLFLAAAKTVRLEQEGPSHGSRQNKPMGVRAQRGFVLGIVC
LVMALLSGSAESKAMRYFCSIYAVVAGEYTVPCSSMPSVSDAASGYTAIL
VSYELGQPRNLQSFLKSYLVNHSE