prot_S-latissima_F_contig986.17578.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig986.17578.1
Unique Nameprot_S-latissima_F_contig986.17578.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length309
Homology
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BLAST of mRNA_S-latissima_F_contig986.17578.1 vs. uniprot
Match: D7FY80_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY80_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.600e-41
Identity = 132/254 (51.97%), Postives = 142/254 (55.91%), Query Frame = 0 
Query:   37 APSKPRCRKVAARCRGKSCARRPWFAPPGTCVPRACKEHRGEGEVNVYARECEVDGCRTRPHYGKEGDRAKFCXXXXXXXXXXXXXXXXXXXXXXXXXSWARSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLFPSKSAAXXXXXXXXAAPQALKPTPTPVTLSPPSTSTTDLSEDGQPCADTAVATAFADTXXXXXXXXXXXXXXXXXAGPGPARYCAAHAPTGSVNVAASRCRHPR-CSVQPTFGRAGGGE 289
            APSKPRCRKV ARCR + C  RPWFA PG+ VPRACK H+ EGEVNVYA  CE D C TRPHYG +G RA+F X                        SWAR +XXXXXXXXXXXXXXXXXXXXXXXXXXXX    SKS A                     T S PS   T+ +  G      A ATA A                     PGPARYCAAHAP G+ NV ASRCRHP  CSVQP FGR GGG+
Sbjct:   12 APSKPRCRKVGARCRFEGCTGRPWFAQPGSRVPRACKAHKEEGEVNVYAPACEADACTTRPHYGADGGRARFXXKHKLDGMVDVLNKRCAKKGCRRQPSWARERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSGAVA------------------TTKSQPSEDNTETTAGG------AAATAAAH--------------------PGPARYCAAHAPAGATNVTASRCRHPGGCSVQPYFGREGGGQ 221
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig986.17578.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY80_ECTSI1.600e-4151.97EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY80... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig986contigS-latissima_F_contig986:138879..143539 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig986.17578.1mRNA_S-latissima_F_contig986.17578.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig986 136532..144143 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig986.17578.1 ID=prot_S-latissima_F_contig986.17578.1|Name=mRNA_S-latissima_F_contig986.17578.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=309bp
MKTTGIEAEATATTTTATTTASASVATVTAAKASNKAPSKPRCRKVAARC
RGKSCARRPWFAPPGTCVPRACKEHRGEGEVNVYARECEVDGCRTRPHYG
KEGDRAKFCFKHKVNGMVDLLNKRCAKMGCRKQPSWARSQGDRAVFCKEH
KEDGMVDTRHKTCQHPGCTLFPSKSAAAPPPPPPPAAPQALKPTPTPVTL
SPPSTSTTDLSEDGQPCADTAVATAFADTTTTNNNSSTNITTTTTAAGPG
PARYCAAHAPTGSVNVAASRCRHPRCSVQPTFGRAGGGESRGILRSPPRE
GYGGREES*
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