prot_S-latissima_F_contig986.17575.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-latissima_F_contig986.17575.1
Unique Name	prot_S-latissima_F_contig986.17575.1
Type	polypeptide
Organism	Saccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length	388

Homology

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BLAST of mRNA_S-latissima_F_contig986.17575.1 vs. uniprot
Match: A0A6H5K9D0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D0_9PHAE)

HSP 1 Score: 304 bits (779), Expect = 4.510e-91
Identity = 152/184 (82.61%), Postives = 161/184 (87.50%), Query Frame = 0

Query:   69 SDLDDALDDNDDEDGVGFD--SNWPRRDSIVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFSTSEQANRAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSGEYICKLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFSSHEEAAVVFNRHQVNP 250
            SDL DAL D+        D  + W  R+  VPK GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRF+TSEQAN AIETMHRFEFKHGRFLGVLPSDENRTLFVGGL+EEWS  YIC+LLKEKMPGLRKVEPIPDREDRFKIRTFCFLEF+SH EAAV+FNRHQ +P
Sbjct:   79 SDLRDALKDDXXXXXESLDLGTAWASRE-FVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANLAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFNRHQTSP 261

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BLAST of mRNA_S-latissima_F_contig986.17575.1 vs. uniprot
Match: D7FYA2_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA2_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 3.500e-69
Identity = 142/226 (62.83%), Postives = 154/226 (68.14%), Query Frame = 0

Query:    1 MAPLQL-PDEVWGGLCTSRQFLGG-------ELVVAQQDWRCQGEPRAAPAGPLESAFSPE-DKSR----ELAEASDPLCFSDLDDALDDNDDE------DGVGFDSNWPRRDSIVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFSTSEQANRAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSGEYICKLLKEKM 207
            MAP Q+ P    G L T RQ L         EL     +   QGE  A    P  S F+P  D+S     E A    P C SDL DAL  NDD       + +   + W  R+  VPK GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRF+TSEQANRAI+TMHRFEFKHGRFLGVLPSDENRTLFVGGL+EEWS  YIC+LLKEKM
Sbjct:    1 MAPRQVFPYHECGVLRTPRQLLAESQQQQRKELESXXXEQHRQGEQWADIDKP--SPFTPTFDESGSSGGEAACVQQPHC-SDLRDAL--NDDXXXXXXXESLDLGAVWASRE-FVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKM 220

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BLAST of mRNA_S-latissima_F_contig986.17575.1 vs. uniprot
Match: A0A836CKV5_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV5_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.480e-42
Identity = 84/169 (49.70%), Postives = 111/169 (65.68%), Query Frame = 0

Query:   98 PKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFSTSEQANRAIETMHRFEFKHGRFLG-------------------VLPSDENRTLFVGGLREEWSGEYICKLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFSSHEEAAVVFNRHQ 247
            P  GVEIFVGGLTRS+ R++L D F H G++TEVRIARDKRRRRCRGYG+VRF TSEQAN A+E+M  F+FK G +L                    VLPSDENRTL+  G+ E+ S + +C  L     G++++  +  +ED  K+R FCF+EF ++E+AAV    H+
Sbjct:  151 PCPGVEIFVGGLTRSSTRELLYDCFSHIGDITEVRIARDKRRRRCRGYGFVRFRTSEQANMAVESMQAFQFKRGCYLSALLNAKKIAXXXXXXXXXXVLPSDENRTLYACGIEEDVSPDAVCWFLTRSFEGIKRIHLMWGKEDVCKLRPFCFIEFHTNEQAAVALLSHR 319

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BLAST of mRNA_S-latissima_F_contig986.17575.1 vs. uniprot
Match: A0A836CJD8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD8_9STRA)

HSP 1 Score: 164 bits (416), Expect = 4.220e-41
Identity = 81/175 (46.29%), Postives = 107/175 (61.14%), Query Frame = 0

Query:   98 PKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFSTSEQANRAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSGEYICKLLKEKMPGLRK--------------------------VEPIPDREDRFKIRTFCFLEFSSHEEAAVVFNRH 246
            P  GVEIFVGGLTR++  +ML DWF H GE+TEVR+ARDKRRRRCRGYG+VRF  SEQAN AIE M  ++FK G +LG+LPSDENRTL+V G+ + WS + +         G+++                          ++ + DRE   ++R FCF+EF +HE A     R+
Sbjct:  230 PPPGVEIFVGGLTRASSAEMLYDWFCHLGEITEVRVARDKRRRRCRGYGFVRFRNSEQANLAIEAMQGYQFKKGCYLGMLPSDENRTLYVSGMCQSWSQDQVHAYFSANFEGVKRQVELCAARDAAARRAPLCWRRVASIRMQLVWDRETPSRLRPFCFVEFDTHEHATSAHARY 404

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BLAST of mRNA_S-latissima_F_contig986.17575.1 vs. uniprot
Match: A0A6P6T934_COFAR (nucleolin-like n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6T934_COFAR)

HSP 1 Score: 109 bits (273), Expect = 2.590e-22
Identity = 63/152 (41.45%), Postives = 88/152 (57.89%), Query Frame = 0

Query:   99 KRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFSTSEQANRAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSGEYICKLLKEKMPGLRKVEPIP---DREDRFKIRTFCFLEFSSHEEAAVVFNRHQ 247
            ++ +EIFVGGL R    + L+  F++AGEV +VR+ +D    + +GY +VRFST E+ANRA+  M     + G+  G  PS++N TLFVG +   W+ E I   LKE   G+  VE I    D +     R F FLEFS H EA + + R Q
Sbjct:  342 RKELEIFVGGLDRDVTEEDLKRVFKYAGEVVDVRLHKDPSTNKNKGYAFVRFSTKEEANRALSEMKNPVIR-GKRCGTAPSEDNDTLFVGNICNTWTKEAIKDKLKEY--GIESVESITLVADPKHEGLSRGFAFLEFSCHAEAMLAYKRLQ 490

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BLAST of mRNA_S-latissima_F_contig986.17575.1 vs. uniprot
Match: A0A3R7PBM7_PENVA (Putative RNA-binding protein 47 isoform X6 n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7PBM7_PENVA)

HSP 1 Score: 102 bits (253), Expect = 2.030e-21
Identity = 53/151 (35.10%), Postives = 87/151 (57.62%), Query Frame = 0

Query:   91 PRRDSIVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFSTSEQANRAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSGEYICKLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFSSHEEAAV 241
            P  D + P +G E+F+G + R    D L    + AG++ EVR+  +      RGYG+V+F+T E+A  A+ +++  E +  RFLGV+ S +N  LFVGG+ +  S E + + ++    G+ K+   P   DR K R + F+E+ SH+ AA+
Sbjct:   58 PSWDGLPPPKGCEVFIGKIPRDMFEDELVPVLERAGKLYEVRLMMETASTN-RGYGFVQFTTREEAETALRSLNNHEVRPNRFLGVMRSVDNNRLFVGGIPKNRSREEVQEEMRRVTEGVVKIILYPCVNDRTKNRGYAFVEYESHKAAAM 207

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BLAST of mRNA_S-latissima_F_contig986.17575.1 vs. uniprot
Match: UPI001CC6ABC6 (heterogeneous nuclear ribonucleoprotein Q-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC6ABC6)

HSP 1 Score: 105 bits (261), Expect = 4.300e-21
Identity = 50/137 (36.50%), Postives = 80/137 (58.39%), Query Frame = 0

Query:   97 VPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFSTSEQANRAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSGEYICKLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEF 233
            +P  G EIF+GGL R    D LRD  +  G ++E+R+ +DK R   +GY +V F++ + A +AIE +H  EFK GR L    S     LF+G + + WS   + K+++E  PG+  +E + D ++  + R F F+E+
Sbjct:  100 LPAHGSEIFIGGLPREVTEDDLRDLCEPIGNISEIRLMKDKDRGESKGYAFVTFNSKDLAKKAIEELHNKEFK-GRTLRCSLSQTKHRLFIGNIPKSWSEAELRKVIEENGPGVENIELLKDPQNPSRNRGFAFIEY 235

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BLAST of mRNA_S-latissima_F_contig986.17575.1 vs. uniprot
Match: A9STT2_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9STT2_PHYPA)

HSP 1 Score: 100 bits (250), Expect = 1.160e-20
Identity = 56/149 (37.58%), Postives = 86/149 (57.72%), Query Frame = 0

Query:  102 VEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFSTSEQANRAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSGEYICKLLKEKMPGLRKVEPIPDRED---RFKIRTFCFLEFSSHEEAAVVFNRHQ 247
            +E+FVGGL + T  + L   F   G+V EVR+ ++ +  + +GY ++RF+++  A RA   + R E + GR  GVLPS+EN TLF+G + + W  E + + LK+    +  VE I   ED       R F F+EF++H+EA   F R Q
Sbjct:   18 LEVFVGGLDKETTEEELESVFGRVGDVVEVRLMKNAQTGKNKGYAFIRFASAAIAKRASHDLERVEIR-GRSCGVLPSEENDTLFLGNISKLWKKETVLETLKKF--AIENVEDITLMEDPQLEGVNRGFAFIEFNTHKEALNAFRRLQ 163

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BLAST of mRNA_S-latissima_F_contig986.17575.1 vs. uniprot
Match: UPI001C70E67E (probable RNA-binding protein 46 n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C70E67E)

HSP 1 Score: 100 bits (250), Expect = 1.180e-20
Identity = 53/151 (35.10%), Postives = 85/151 (56.29%), Query Frame = 0

Query:   91 PRRDSIVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFSTSEQANRAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSGEYICKLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFSSHEEAAV 241
            P  D + P +G E+F+G + R    D L    + AG++ EVR+  +      RGYG+V+F+T E+A  A+ T++  E +  RFLGV+ S +N  LFVGG+ +  + E +   +     G+ K+   P   DR K R + F+E+ SH+ AA+
Sbjct:   75 PAWDGLPPPKGCEVFIGKIPRDMLEDELVPVMERAGKLYEVRLMMETASTN-RGYGFVQFTTREEAENALRTLNNHEIRPNRFLGVMRSVDNNRLFVGGIPKNRTREEVQDEMCRVTEGVVKIILYPCVNDRTKNRGYAFVEYESHKAAAM 224

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BLAST of mRNA_S-latissima_F_contig986.17575.1 vs. uniprot
Match: UPI000F6608BA (probable RNA-binding protein 46 n=2 Tax=Penaeus TaxID=133894 RepID=UPI000F6608BA)

HSP 1 Score: 102 bits (253), Expect = 2.560e-20
Identity = 53/151 (35.10%), Postives = 87/151 (57.62%), Query Frame = 0

Query:   91 PRRDSIVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFSTSEQANRAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSGEYICKLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFSSHEEAAV 241
            P  D + P +G E+F+G + R    D L    + AG++ EVR+  +      RGYG+V+F+T E+A  A+ +++  E +  RFLGV+ S +N  LFVGG+ +  S E + + ++    G+ K+   P   DR K R + F+E+ SH+ AA+
Sbjct:   58 PSWDGLPPPKGCEVFIGKIPRDMFEDELVPVLERAGKLYEVRLMMETASTN-RGYGFVQFTTREEAETALRSLNNHEVRPNRFLGVMRSVDNNRLFVGGIPKNRSREEVQEEMRRVTEGVVKIILYPCVNDRTKNRGYAFVEYESHKAAAM 207

The following BLAST results are available for this feature:

BLAST of mRNA_S-latissima_F_contig986.17575.1 vs. uniprot

BLAST of mRNA_S-latissima_F_contig986.17575.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K9D0_9PHAE	4.510e-91	82.61	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D7FYA2_ECTSI	3.500e-69	62.83	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A836CKV5_9STRA	1.480e-42	49.70	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A836CJD8_9STRA	4.220e-41	46.29	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A6P6T934_COFAR	2.590e-22	41.45	nucleolin-like n=3 Tax=Coffea TaxID=13442 RepID=A0...	[more]
A0A3R7PBM7_PENVA	2.030e-21	35.10	Putative RNA-binding protein 47 isoform X6 n=1 Tax...	[more]
UPI001CC6ABC6	4.300e-21	36.50	heterogeneous nuclear ribonucleoprotein Q-like n=1...	[more]
A9STT2_PHYPA	1.160e-20	37.58	Predicted protein n=1 Tax=Physcomitrium patens Tax...	[more]
UPI001C70E67E	1.180e-20	35.10	probable RNA-binding protein 46 n=1 Tax=Penaeus ja...	[more]
UPI000F6608BA	2.560e-20	35.10	probable RNA-binding protein 46 n=2 Tax=Penaeus Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 184..260 e-value: 0.14 score: 14.2 coord: 103..177 e-value: 2.6E-20 score: 83.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 104..169 e-value: 1.1E-17 score: 63.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 102..181 score: 16.841
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 182..258 e-value: 1.1E-9 score: 40.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 47..181 e-value: 2.9E-21 score: 78.0
None	No IPR available	PANTHER	PTHR21245	FAMILY NOT NAMED	coord: 70..247
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 103..243

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-latissima_F_contig986	contig	S-latissima_F_contig986:21436..44483 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Saccharina latissima female	2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90	2022-09-16
OGS1.0 of Saccharina latissima SLPER63f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-latissima_F_contig986.17575.1	mRNA_S-latissima_F_contig986.17575.1	Saccharina latissima SLPER63f female	mRNA	S-latissima_F_contig986 21436..44658 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-latissima_F_contig986.17575.1 ID=prot_S-latissima_F_contig986.17575.1|Name=mRNA_S-latissima_F_contig986.17575.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=388bp
MAPLQLPDEVWGGLCTSRQFLGGELVVAQQDWRCQGEPRAAPAGPLESAF
SPEDKSRELAEASDPLCFSDLDDALDDNDDEDGVGFDSNWPRRDSIVPKR
GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRF
STSEQANRAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSGEYIC
KLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFSSHEEAAVVFNRHQVNP
PPQQQQLQPAVPPPPLAPSDHHHHHPSFLDTEVEEGGGVAGRAPVADGAV
GCAAFGEMETRTNSNRSSSTCASGDGPLQEGSEGDLGVGCAAVEGGGPLS
FESSEVSGWRRAMEDDPGGALADGSGGGGGGGGSSRGG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf