prot_S-latissima_F_contig983.17546.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig983.17546.1
Unique Nameprot_S-latissima_F_contig983.17546.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length253
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig983.17546.1 vs. uniprot
Match: A0A6H5JTS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS8_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.820e-7
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 0 
Query:   25 LAHALETMA-PPQCAGKAQDVMVVSTSITDCAGLEALPQPMTEDVHLMVDSVEGIVCDSVVTVTVGGGHELRV 96
            LA A+ T A PPQC  + +     +  I+DCAGLEALP  +T+D+HL  D V  IVC+ +VT+TVGGG EL +
Sbjct:   12 LALAISTGAQPPQCT-RPRRRAAGTVPISDCAGLEALPSLITQDLHLSFD-VGAIVCEKLVTLTVGGGIELAI 82
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig983.17546.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTS8_9PHAE2.820e-750.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..252
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.631

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig983contigS-latissima_F_contig983:40223..55543 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig983.17546.1mRNA_S-latissima_F_contig983.17546.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig983 40108..73853 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig983.17546.1 ID=prot_S-latissima_F_contig983.17546.1|Name=mRNA_S-latissima_F_contig983.17546.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=253bp
MWPHTLQLYLVVFAGASLQSFTAPLAHALETMAPPQCAGKAQDVMVVSTS
ITDCAGLEALPQPMTEDVHLMVDSVEGIVCDSVVTVTVGGGHELRVSSKS
SNSSKSQAVAISVMLLSMTNVRFVVEDGSSLNFRQADDDRGHHEPYQHQK
ASKHPHKSNITNIVGGGTRLQFSGLAPKGIPTEAFWRFCREAPRYLRCLF
SSIPTLSRRGILAERYTSRARSPLNTPRILLETARLGWGCGGVRVRAEER
CR*
back to top