prot_S-latissima_F_contig980.17529.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig980.17529.1
Unique Nameprot_S-latissima_F_contig980.17529.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length84
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig980.17529.1 vs. uniprot
Match: D7G646_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G646_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.270e-21
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 0 
Query:    2 WAAVPVESKRECLGNVLLAIAARFPDVGYCQGMDRLLTMLMMLYFISPEDTATA 55
            WAAVPVESKR CL NVL AIAARFP VGYCQGMDRLL MLMMLYF+SPEDT TA
Sbjct: 1862 WAAVPVESKRRCLENVLRAIAARFPAVGYCQGMDRLLIMLMMLYFVSPEDTNTA 1915
[Close]
BLAST of mRNA_S-latissima_F_contig980.17529.1 vs. uniprot
Match: A0A6H5JL00_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL00_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 8.240e-21
Identity = 46/54 (85.19%), Postives = 47/54 (87.04%), Query Frame = 0 
Query:    2 WAAVPVESKRECLGNVLLAIAARFPDVGYCQGMDRLLTMLMMLYFISPEDTATA 55
            WAAVPV SKR CL NVLLAIAARFP VGYCQGMDRLL MLMMLYF+ PEDT TA
Sbjct: 2120 WAAVPVGSKRRCLENVLLAIAARFPAVGYCQGMDRLLIMLMMLYFVPPEDTNTA 2173
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig980.17529.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G646_ECTSI1.270e-2187.04Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JL00_9PHAE8.240e-2185.19Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.270coord: 3..62
e-value: 3.1E-8
score: 35.3
IPR000195Rab-GTPase-TBC domainPFAMPF00566RabGAP-TBCcoord: 10..51
e-value: 1.2E-8
score: 34.8
IPR000195Rab-GTPase-TBC domainPROSITEPS50086TBC_RABGAPcoord: 1..84
score: 8.638
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 10..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig980contigS-latissima_F_contig980:44603..46080 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig980.17529.1mRNA_S-latissima_F_contig980.17529.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig980 44603..46110 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig980.17529.1 ID=prot_S-latissima_F_contig980.17529.1|Name=mRNA_S-latissima_F_contig980.17529.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=84bp
MWAAVPVESKRECLGNVLLAIAARFPDVGYCQGMDRLLTMLMMLYFISPE
DTATAATAAAAAAAAADNAANVAASAAALPAPSV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000195Rab-GTPase-TBC_dom
IPR035969Rab-GTPase_TBC_sf