prot_S-latissima_F_contig977.17506.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig977.17506.1
Unique Nameprot_S-latissima_F_contig977.17506.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length354
Homology
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BLAST of mRNA_S-latissima_F_contig977.17506.1 vs. uniprot
Match: A0A6H5K2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2H6_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 8.680e-62
Identity = 139/337 (41.25%), Postives = 188/337 (55.79%), Query Frame = 0 
Query:    1 MGCWTAWTLCTVFILPVSALPSWLSGWRACDRHEEREWSSNFQTSIEESGLGGQKGLSRLAVDLRSGVLSLPVPHVYAVLGGGDWGPRAVVKALVESVYLAGWNTGAVVVVDMEE-AKKVHRDRGIEEAQLWLKDKVASAIVRCPQKATVVFDNVQALQGQDLLLLDPLLLLFDGNKSIMDHGDMKLSGDGTVFLLLLNEDDSEETEGLNGKDRLRHALTFEGRGFTTDAFVGRMDAALVLSSPPPRSPEQQTAIEEAWRIISSEEDSANLPGGIGG-------AITTALRDAEPRTLQVVGATVAA-ILATGV----AACWALGCFEEAPRQNEDG 324
            M CW  W L ++ +LP ++          C + E   W   FQ +IE +GL G+ G++ +  DLR+G LS PVPH Y ++GGG+WGPR V +AL++SVY   W+   VVV+DMEE A        ++EAQ  L  ++  AI RC  +A VV DNV  LQG+DL +LD +L L DG KS M+    K+SG+G +FLLLLNE+ SE  + L+GKDRL  A  F G  FTT AFVGR+D A+ LS  P   P +  +  +  R   + E   +   G+          I TALR+ +  TLQ VG   AA +LA  V    AA  A+G    A +    G
Sbjct:   44 MACWRIWALFSLLVLPGNS--------SQCAKKEGSNWHV-FQNAIEAAGLAGEDGIANILADLRTGALSQPVPHTYVIVGGGEWGPRVVAEALLDSVY-ERWSND-VVVLDMEEQAAFWGPSSNLDEAQEQLNRQLCVAIKRCVGRAVVVLDNVHLLQGEDLRVLDTMLSLTDGRKSNMECNGHKVSGEGCLFLLLLNEEGSEGMKRLSGKDRLLSAWEFRGMEFTTRAFVGRVDVAVSLSKEPTFVPAETKSAWQDARKGPAPEGVLDRANGVWREVVKVERGIRTALREMDRETLQAVGVVAAAAVLACAVYFREAALGAIGTIGGATKGGSPG 369
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BLAST of mRNA_S-latissima_F_contig977.17506.1 vs. uniprot
Match: D7FL46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL46_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 5.950e-30
Identity = 88/208 (42.31%), Postives = 118/208 (56.73%), Query Frame = 0 
Query:  125 IEEAQLWLKDKVASAIVRCPQKATVVFDNVQALQGQDLLLLDPLLLLFDGNKSIMDHGDMKLSGDGTVFLLLLNEDDSEETEGLNGKDRLRHALTFEGRGFTTDAFVGRMDAALVLSSPPPRSPEQQTAIEEAWRIISSEEDSANLPGGIGG-------AITTALRDAEPRTLQVVG--ATVAAILATGV----AACWALGCFEEAPR 319
            +++AQ  L  ++  AI RC  +A VV DNV  LQG+DL +LD +L L DG KS M+    K+SG+G +FLLLLNE+ SE+ + L+GKDRL  A  F G  FTT AFVGR+D A+ LS  P    E   +  +  R   + E   +   G+          I  ALR+A+  TLQ VG  AT AA+LA  V    AA  A+  F +A +
Sbjct:   14 LDKAQEQLNRQLCVAIERCVGRAVVVLDNVHLLQGEDLRVLDTMLSLTDGRKSNMECNGHKVSGEGCLFLLLLNEEGSEDMKRLSGKDRLLSAWEFRGMEFTTRAFVGRVDVAVSLSKEPSFVREGTKSAWQDARKGPAPEGVLDRANGVWREVVKVERGIRMALREADRDTLQAVGVVATAAAVLACAVYFREAASGAIVSFRDAAK 221
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig977.17506.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2H6_9PHAE8.680e-6241.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL46_ECTSI5.950e-3042.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..354
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.924
NoneNo IPR availableTMHMMTMhelixcoord: 4..26
NoneNo IPR availableTMHMMTMhelixcoord: 292..314

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig977contigS-latissima_F_contig977:22587..37421 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig977.17506.1mRNA_S-latissima_F_contig977.17506.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig977 22587..37424 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig977.17506.1 ID=prot_S-latissima_F_contig977.17506.1|Name=mRNA_S-latissima_F_contig977.17506.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=354bp
MGCWTAWTLCTVFILPVSALPSWLSGWRACDRHEEREWSSNFQTSIEESG
LGGQKGLSRLAVDLRSGVLSLPVPHVYAVLGGGDWGPRAVVKALVESVYL
AGWNTGAVVVVDMEEAKKVHRDRGIEEAQLWLKDKVASAIVRCPQKATVV
FDNVQALQGQDLLLLDPLLLLFDGNKSIMDHGDMKLSGDGTVFLLLLNED
DSEETEGLNGKDRLRHALTFEGRGFTTDAFVGRMDAALVLSSPPPRSPEQ
QTAIEEAWRIISSEEDSANLPGGIGGAITTALRDAEPRTLQVVGATVAAI
LATGVAACWALGCFEEAPRQNEDGSRSAPSLWASSDSDSGGGGGGGKGRT
AKTA
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