prot_S-latissima_F_contig97.17451.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig97.17451.1
Unique Nameprot_S-latissima_F_contig97.17451.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length102
Homology
BLAST of mRNA_S-latissima_F_contig97.17451.1 vs. uniprot
Match: A0A6H5JR04_9PHAE (Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR04_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 9.450e-64
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGGRGRG 100
            MKLVRFLMKMNNETVTVELKNGTTVHGTV+SVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDG RGRG
Sbjct:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVASVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGARGRG 100          
BLAST of mRNA_S-latissima_F_contig97.17451.1 vs. uniprot
Match: A0A835YYQ8_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ8_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.140e-48
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDG 95
            MKLVRFLMK+NNETVT+ELKNGTTVHGTV+ VDV+MNTHLK VKVTPKG+N    D+LSIRGNNIRCYILPDN+NLDQLLIDDAPK KPG  K G
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTTVHGTVAGVDVNMNTHLKGVKVTPKGRNTQDCDTLSIRGNNIRCYILPDNINLDQLLIDDAPKAKPGIPKAG 95          
BLAST of mRNA_S-latissima_F_contig97.17451.1 vs. uniprot
Match: A0A7S2FU32_9STRA (Small nuclear ribonucleoprotein Sm D1 (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU32_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.340e-45
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGGRGRG 100
            MKLVRFLMK+NNETVT+ELKNGT V GTV+ VDV+MNT++KNVKVT KGKN   YD+LSIRGNNIR Y+LPD++NLD LLIDDAPKQK  KV  GGRG G
Sbjct:   22 MKLVRFLMKLNNETVTIELKNGTVVQGTVAGVDVAMNTYMKNVKVTVKGKNTVNYDTLSIRGNNIRYYLLPDSINLDALLIDDAPKQKAPKVAAGGRGPG 121          
BLAST of mRNA_S-latissima_F_contig97.17451.1 vs. uniprot
Match: T0RK40_SAPDV (Small nuclear ribonucleoprotein Sm D1 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=T0RK40_SAPDV)

HSP 1 Score: 150 bits (379), Expect = 3.870e-45
Identity = 73/88 (82.95%), Postives = 81/88 (92.05%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK 88
            MKLVRFLMK++NETVT+ELKNGT VHGTV+ VD+SMNTHLK VK+T KGKNPT+ DSLSIRGNNIRCYILPD+LNLD LLIDD PKQK
Sbjct:    1 MKLVRFLMKLSNETVTIELKNGTVVHGTVTGVDISMNTHLKAVKMTVKGKNPTSLDSLSIRGNNIRCYILPDSLNLDTLLIDDTPKQK 88          
BLAST of mRNA_S-latissima_F_contig97.17451.1 vs. uniprot
Match: W7T3T7_9STRA (Small nuclear ribonucleoprotein Sm D1 n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T3T7_9STRA)

HSP 1 Score: 148 bits (373), Expect = 4.070e-44
Identity = 77/100 (77.00%), Postives = 86/100 (86.00%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK--PGKVKDGGRG 98
            MKLVRFLMK+NNETVT+ELKNGTT+ GT+S VDVSMNT+LKNVKVT KGKNP +Y+SLSIRGNNIR YILPD LNLD LL+DD PK K  PG  + GGRG
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPG-AQAGGRG 99          
BLAST of mRNA_S-latissima_F_contig97.17451.1 vs. uniprot
Match: A0A7S2V5U0_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5U0_9STRA)

HSP 1 Score: 147 bits (371), Expect = 5.850e-44
Identity = 75/100 (75.00%), Postives = 85/100 (85.00%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK--PGKVKDGGRG 98
            MKLVRFLMK+NNETVT+ELKNGT VHGTV+ VDVSMNT+L+NVK+T K KNP + ++LSIRGNNIR Y+LPDNLNLD LLIDD PKQK  PG    GGRG
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTVVHGTVAGVDVSMNTYLRNVKMTVKQKNPVSLETLSIRGNNIRYYLLPDNLNLDTLLIDDTPKQKVRPGVAMRGGRG 100          
BLAST of mRNA_S-latissima_F_contig97.17451.1 vs. uniprot
Match: A0A024TLD1_9STRA (Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLD1_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.460e-43
Identity = 72/88 (81.82%), Postives = 80/88 (90.91%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK 88
            MKLVRFLMK+ NETVT+ELKNGT VHGT+S VD+SMNTHLK VK+T KGKNPT+ DSLSIRGNNIR YILPD+LNLD LLIDD+PKQK
Sbjct:    1 MKLVRFLMKLTNETVTIELKNGTVVHGTISGVDISMNTHLKVVKMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQK 88          
BLAST of mRNA_S-latissima_F_contig97.17451.1 vs. uniprot
Match: K3WSY3_GLOUD (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSY3_GLOUD)

HSP 1 Score: 147 bits (370), Expect = 1.740e-43
Identity = 74/102 (72.55%), Postives = 87/102 (85.29%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK--PGKVKDGGRGRG 100
            MKLVRFLMK++NETVT+ELKNGT VHGT++ VD+SMNTHLK+VK+T KGKNP + DSLSIRGNNIR YILPD+LNLD LLI+D P++K   G    GGRGRG
Sbjct:    1 MKLVRFLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKSVKMTVKGKNPVSLDSLSIRGNNIRYYILPDSLNLDTLLIEDTPREKVKAGAPAAGGRGRG 102          
BLAST of mRNA_S-latissima_F_contig97.17451.1 vs. uniprot
Match: A0A397E2M2_9STRA (Small nuclear ribonucleoprotein Sm D1 n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A397E2M2_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.790e-43
Identity = 72/88 (81.82%), Postives = 80/88 (90.91%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQK 88
            MKLVRFLMK+ NETVT+ELKNGT VHGT+S VD+SMNTHLK VK+T KGKNPT+ DSLSIRGNNIR YILPD+LNLD LLIDD+PKQK
Sbjct:   32 MKLVRFLMKLTNETVTIELKNGTVVHGTISGVDISMNTHLKVVKMTVKGKNPTSLDSLSIRGNNIRYYILPDSLNLDTLLIDDSPKQK 119          
BLAST of mRNA_S-latissima_F_contig97.17451.1 vs. uniprot
Match: A0A7S2SJR6_9STRA (Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJR6_9STRA)

HSP 1 Score: 145 bits (367), Expect = 5.460e-43
Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = 0
Query:    1 MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGKNPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDG 95
            MKLVRFLMK+N ETVT+ELKNGT V GTV+ VDV+MNT++KNVK+T KGKN   YDSLSIRGNNIR YILPDNLNLD LLIDD PK KP KV+ G
Sbjct:   23 MKLVRFLMKLNKETVTIELKNGTVVQGTVAGVDVAMNTYMKNVKLTVKGKNTVHYDSLSIRGNNIRYYILPDNLNLDTLLIDDTPKAKPPKVQTG 117          
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig97.17451.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR04_9PHAE9.450e-6498.00Small nuclear ribonucleoprotein Sm D1 n=2 Tax=Ecto... [more]
A0A835YYQ8_9STRA2.140e-4882.11Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Trib... [more]
A0A7S2FU32_9STRA1.340e-4576.00Small nuclear ribonucleoprotein Sm D1 (Fragment) n... [more]
T0RK40_SAPDV3.870e-4582.95Small nuclear ribonucleoprotein Sm D1 n=5 Tax=Sapr... [more]
W7T3T7_9STRA4.070e-4477.00Small nuclear ribonucleoprotein Sm D1 n=3 Tax=Nann... [more]
A0A7S2V5U0_9STRA5.850e-4475.00Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Fibr... [more]
A0A024TLD1_9STRA1.460e-4381.82Small nuclear ribonucleoprotein Sm D1 n=4 Tax=Apha... [more]
K3WSY3_GLOUD1.740e-4372.55Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Glob... [more]
A0A397E2M2_9STRA3.790e-4381.82Small nuclear ribonucleoprotein Sm D1 n=6 Tax=Apha... [more]
A0A7S2SJR6_9STRA5.460e-4376.84Small nuclear ribonucleoprotein Sm D1 n=1 Tax=Rhiz... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..70
e-value: 2.1E-16
score: 70.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 5..68
e-value: 6.8E-19
score: 67.3
NoneNo IPR availableGENE3D2.30.30.100coord: 1..85
e-value: 5.5E-36
score: 124.0
NoneNo IPR availablePANTHERPTHR23338:SF18SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1coord: 1..99
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..99
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig97contigS-latissima_F_contig97:256129..264601 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig97.17451.1mRNA_S-latissima_F_contig97.17451.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig97 256129..264697 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig97.17451.1 ID=prot_S-latissima_F_contig97.17451.1|Name=mRNA_S-latissima_F_contig97.17451.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=102bp
MKLVRFLMKMNNETVTVELKNGTTVHGTVSSVDVSMNTHLKNVKVTPKGK
NPTTYDSLSIRGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDGGRGRG
GR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR010920LSM_dom_sf