prot_S-latissima_F_contig967.17437.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig967.17437.1
Unique Nameprot_S-latissima_F_contig967.17437.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length398
Homology
BLAST of mRNA_S-latissima_F_contig967.17437.1 vs. uniprot
Match: D8LGR2_ECTSI (Ribosomal protein L25, Ctc-form n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGR2_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 2.420e-101
Identity = 183/320 (57.19%), Postives = 215/320 (67.19%), Query Frame = 0
Query:   91 MEEEDTGPAVREMRAQLRPSNEHGSRGARKLRKEGKIPGVVYSNNDSSAKGSR---------GETFLVKVDKIVLDREIRRLKASFDNTVYDLVIEGARPSELDDEEVGFNLL----GEGGAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDQPERRELVLANETRLHPGEDDYDTTQFINYVRKIMRTVLFRTVLSVNWMRYKAGRKYPIPVKFINDDLNDNFKKGAYIRRRAHTHKRAPRKHIILPEDPEKVPKWLYLDLETVRSGSKLRVSDILLPEGILLFRGYDPAIWNEVVCTIKGRKLFGGDSADREDEDE 397
            MEEED+GP +REMR Q+RP  E+GSRGAR++R+ GK+PGVVYSN+D+    SR          +  LVKVDKIVLDRE+RRL ASFDNTVYDLVIEG   S  D  + G  +     G GG  G                XXXXXXXX       PERRELVLAN++RLHP                     +FRT+LSVNW+RYKAGRKYPIP+KFIN DLN+NF+KGAYIRR   TH+     HI+LPEDPE VPKWLYLDLE VRSGSKLRVSD+++PEGILL R  +P +WNEVVCTIKGRK+F    +  +DEDE
Sbjct:    1 MEEEDSGPIIREMRVQVRPRGEYGSRGARRIRRAGKVPGVVYSNSDNRGHSSRPGGGVGRPADDPILVKVDKIVLDREVRRLNASFDNTVYDLVIEGETSSGDDAADDGIEVTVTDPGAGGDRGKEEEEGVSAGEGGVEGXXXXXXXX-------PERRELVLANQSRLHP---------------------VFRTLLSVNWIRYKAGRKYPIPIKFINSDLNENFRKGAYIRR-LKTHQ-----HILLPEDPEMVPKWLYLDLEFVRSGSKLRVSDLMMPEGILLHRANEPGMWNEVVCTIKGRKVFASGDSAGDDEDE 286          
BLAST of mRNA_S-latissima_F_contig967.17437.1 vs. uniprot
Match: A0A397C844_9STRA (Ribosomal_TL5_C domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C844_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.010e-10
Identity = 72/281 (25.62%), Postives = 110/281 (39.15%), Query Frame = 0
Query:  107 LRPSNEHGSRGARKLRKEGKIPGVVYS---NNDSSAKGSRGETFLVKVDKIVLDREIRRLKASFDNTVYDLVIEGARPSELDDEEVGFNLLGEGGAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDQPERRELVLANETRLHPGEDDYDTTQFINYVRKIMRTVLFRTVLSVNWMRYKAGRKYPIPVKFINDDLNDNFKKGAYIRRRAHTHKRAPRKHIILPEDPEKVPKWLYLDLETVRSGSKLRVSDILLPEGILLFRGYDPAIWNE-VVCTIKGRK 383
            L P  + GSR AR+LRK+G +PG++Y    N D+S         LV ++++  +RE R+L+ S  N VY++                    G+GG                                  P  +  VL  +  LHP  D                        SVN++RYK GRK  IP+ F+N + +   K+G YI    H         I      E +P  LY+D+  +  G ++ + +I  PE +       P +  E VV TI G++
Sbjct:   30 LTPRLKDGSREARRLRKQGLLPGILYGEGVNGDASR-------VLVSMNQVDFEREYRKLRTSMGNQVYEVT------------------TGDGG----------------------------------PATK--VLLRDATLHPVTD---------------------IPQSVNFLRYKPGRKVHIPLDFLNQEGSPGLKRGGYINNVYH--------EIPCTIASEVIPAKLYVDVNGMHVGERIYLENITFPEHVT------PLVKPESVVATIAGKR 214          
BLAST of mRNA_S-latissima_F_contig967.17437.1 vs. uniprot
Match: F0WKB2_9STRA (50S ribosomal protein L25 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WKB2_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.530e-9
Identity = 67/274 (24.45%), Postives = 107/274 (39.05%), Query Frame = 0
Query:  114 GSRGARKLRKEGKIPGVVYSNNDSSAKGSRGET--FLVKVDKIVLDREIRRLKASFDNTVYDLVIEGARPSELDDEEVGFNLLGEGGAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDQPERRELVLANETRLHPGEDDYDTTQFINYVRKIMRTVLFRTVLSVNWMRYKAGRKYPIPVKFINDDLNDNFKKGAYIRRRAHTHKRAPRKHIILPEDPEKVPKWLYLDLETVRSGSKLRVSDILLPEGILLFRGYDPAIWNEVVCTIKGRKLF 385
            GSR ARKLRK+G +PG++Y        G  G+    LV ++K + DR  R+L  S DN V+ + ++                                                     DQP    L +  + + HP  D                       L+VN++RYK GRK  IP+ +IN++ +   K+G YI    H         +    + E+VPK L +D+  +   SK  +  I  P+G++      PA    ++  +KGR++ 
Sbjct:   48 GSRAARKLRKKGYLPGLLYGE------GMNGDDTKVLVSLEKKLFDRLHRKLWTSIDNQVFKVQVK-----------------------------------------------------DQPPI--LAIMRDVQFHPVTD---------------------IPLTVNFIRYKNGRKVSIPITYINEEGSPGIKRGGYINHIYH--------EVECYINTEQVPKTLEIDVNGLDVDSKFFLETISFPDGVV---PVVPA--GTLLANLKGRRIL 226          
BLAST of mRNA_S-latissima_F_contig967.17437.1 vs. uniprot
Match: A0A024G2B8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G2B8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.260e-7
Identity = 45/141 (31.91%), Postives = 71/141 (50.35%), Query Frame = 0
Query:  262 VRKIMRTVLFRTV----LSVNWMRYKAGRKYPIPVKFINDDLNDNFKKGAYIRRRAHTHKRAPRKHIILPEDPEKVPKWLYLDLETVRSGSKLRVSDILLPEGILLFRGYDPAI-WNEVVCTIKGRKLFGGDSADREDEDE 397
            V  IMR V F  V    L+VN++RYK GRK  IP+ +IN++ +   K+G YI    H         +    + ++VPK L +D+  +   SK  +  I  P+GI+      PA+    ++  IKGR++        +DE+E
Sbjct:  824 VLAIMRDVQFHPVTDLPLTVNFIRYKHGRKVSIPITYINEEGSPGLKRGGYINHICH--------EVECYVNTDQVPKTLEIDVNGLDVDSKFFLETISFPDGIV------PAVPAGTLLANIKGRRIQALPEVLEDDEEE 950          
BLAST of mRNA_S-latissima_F_contig967.17437.1 vs. uniprot
Match: A0A485LRJ8_9STRA (Aste57867_24188 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRJ8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.400e-6
Identity = 36/127 (28.35%), Postives = 63/127 (49.61%), Query Frame = 0
Query:  262 VRKIMRTVLFRTV----LSVNWMRYKAGRKYPIPVKFINDDLNDNFKKGAYIRRRAHTHKRAPRKHIILPEDPEKVPKWLYLDLETVRSGSKLRVSDILLPEGILLFRGYDPAIW-NEVVCTIKGRK 383
            ++ ++R V    V    L+VN++RYK GRK  IP+ ++N + +   K+G YI    H         I      E++P  L++D+  +  G ++ + +I  PEG+       P +    VV TI G++
Sbjct:  103 IKVLLRDVTLHPVTDVPLTVNFLRYKPGRKVHIPLDYLNTEGSPGLKRGGYINNVRHD--------IPCTIASEEIPAKLFVDVNGMHVGERIYLENITFPEGVT------PLVKAKSVVATIAGKR 215          
BLAST of mRNA_S-latissima_F_contig967.17437.1 vs. uniprot
Match: A0A3R6YZB1_9STRA (Ribosomal_TL5_C domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YZB1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.270e-5
Identity = 34/109 (31.19%), Postives = 54/109 (49.54%), Query Frame = 0
Query:  276 SVNWMRYKAGRKYPIPVKFINDDLNDNFKKGAYIRRRAHTHKRAPRKHIILPEDPEKVPKWLYLDLETVRSGSKLRVSDILLPEGILLFRGYDPAIWNE-VVCTIKGRK 383
            SVN++RYK GRK  IP+ F+N + +   K+G YI    H         I      E +P  L++D+  +  G ++ + DI  PE +       P +  + VV TI G++
Sbjct:  119 SVNFLRYKPGRKVHIPLDFLNQESSPGLKRGGYINNVYH--------EIPCTIASEAIPTKLFVDVNGMHVGQRIYLEDITFPEHVT------PLVKAKAVVATIAGKR 213          
BLAST of mRNA_S-latissima_F_contig967.17437.1 vs. uniprot
Match: A0A6G0XNP1_9STRA (Ribosomal_TL5_C domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNP1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.170e-5
Identity = 34/110 (30.91%), Postives = 56/110 (50.91%), Query Frame = 0
Query:  275 LSVNWMRYKAGRKYPIPVKFINDDLNDNFKKGAYIRRRAHTHKRAPRKHIILPEDPEKVPKWLYLDLETVRSGSKLRVSDILLPEGILLFRGYDPAIWNE-VVCTIKGRK 383
            L+VN++RYK GRK  IP+ ++N + +   K+G YI    H         I      E++P  LY+D+  +  G ++ + +I  PE +       P I  + VV TI G++
Sbjct:  124 LTVNFLRYKPGRKVYIPLDYLNMEGSPGLKRGGYINNVRH--------EIPCTISSEEIPAKLYVDVNGMHVGERIYLENITFPEHV------KPLIKEKSVVATIAGKR 219          
BLAST of mRNA_S-latissima_F_contig967.17437.1 vs. uniprot
Match: A0A482RSQ9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSQ9_9ARCH)

HSP 1 Score: 52.0 bits (123), Expect = 6.530e-5
Identity = 35/112 (31.25%), Postives = 55/112 (49.11%), Query Frame = 0
Query:  274 VLSVNWMRYKAGRKYPIPVKFINDDLNDNFKKGAYIRRRAHTHKRAPRKHII--LPEDPEKVPKWLYLDLETVRSGSKLRVSDILLPEGILLFRGYDPAIWNEVVCTIKGRK 383
            +LSVN++RY+AG    IP++    D + + K+G Y+          P K  +  + ++   VP+ L LDL     G   RV+++ LP  +   RG D    + VV  IK  K
Sbjct:    5 ILSVNFLRYRAGVSLRIPIELRAADQSPDIKRGGYV---------VPVKPFLSCVVQEGAAVPRSLPLDLSGALKGQVFRVANLSLPPCVRPARGEDG---DRVVAVIKAAK 104          
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig967.17437.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LGR2_ECTSI2.420e-10157.19Ribosomal protein L25, Ctc-form n=2 Tax=Ectocarpus... [more]
A0A397C844_9STRA1.010e-1025.62Ribosomal_TL5_C domain-containing protein n=4 Tax=... [more]
F0WKB2_9STRA2.530e-924.4550S ribosomal protein L25 putative n=1 Tax=Albugo ... [more]
A0A024G2B8_9STRA2.260e-731.91Cleavage and polyadenylation specificity factor su... [more]
A0A485LRJ8_9STRA9.400e-628.35Aste57867_24188 protein n=1 Tax=Aphanomyces stella... [more]
A0A3R6YZB1_9STRA2.270e-531.19Ribosomal_TL5_C domain-containing protein n=2 Tax=... [more]
A0A6G0XNP1_9STRA3.170e-530.91Ribosomal_TL5_C domain-containing protein n=1 Tax=... [more]
A0A482RSQ9_9ARCH6.530e-531.25Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029751Ribosomal protein L25PFAMPF01386Ribosomal_L25pcoord: 105..178
e-value: 1.5E-7
score: 31.8
NoneNo IPR availablePANTHERPTHR33284:SF1RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEINcoord: 107..379
NoneNo IPR availablePANTHERPTHR33284FAMILY NOT NAMEDcoord: 107..379
IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamilySUPERFAMILY50715Ribosomal protein L25-likecoord: 112..178
IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamilySUPERFAMILY50715Ribosomal protein L25-likecoord: 261..371

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig967contigS-latissima_F_contig967:147454..161781 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig967.17437.1mRNA_S-latissima_F_contig967.17437.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig967 146756..161861 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig967.17437.1 ID=prot_S-latissima_F_contig967.17437.1|Name=mRNA_S-latissima_F_contig967.17437.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=398bp
MLCRCARLATASWRGAAVGSTSRPSLALLVAGAPSNGAEAQRTTGGADFG
VDAPALQRQPRAGLSTAAAAPKLVYAAPREEGRDVVRTPPMEEEDTGPAV
REMRAQLRPSNEHGSRGARKLRKEGKIPGVVYSNNDSSAKGSRGETFLVK
VDKIVLDREIRRLKASFDNTVYDLVIEGARPSELDDEEVGFNLLGEGGAE
GGGGGGEGGGASPSTGEDATATAAAAAAGGDQPERRELVLANETRLHPGE
DDYDTTQFINYVRKIMRTVLFRTVLSVNWMRYKAGRKYPIPVKFINDDLN
DNFKKGAYIRRRAHTHKRAPRKHIILPEDPEKVPKWLYLDLETVRSGSKL
RVSDILLPEGILLFRGYDPAIWNEVVCTIKGRKLFGGDSADREDEDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029751Ribosomal_L25
IPR011035Ribosomal_L25/Gln-tRNA_synth