prot_S-latissima_F_contig962.17397.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig962.17397.1
Unique Nameprot_S-latissima_F_contig962.17397.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length116
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig962.17397.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 94..116
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..69
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..93
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.569
NoneNo IPR availableTMHMMTMhelixcoord: 70..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig962contigS-latissima_F_contig962:135346..135693 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig962.17397.1mRNA_S-latissima_F_contig962.17397.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig962 135346..135695 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig962.17397.1 ID=prot_S-latissima_F_contig962.17397.1|Name=mRNA_S-latissima_F_contig962.17397.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=116bp
HDVTFFFFFFALCQGGGGGGGKRSWSRSRWYSTRRSPPKTNSKQRKQQKN
KNGRAAKGSATQRNAASASLLSVSLLQLLIATCCCWTYVAVYCKRKRGFL
VIHLSRKKKKGTGLYT
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