prot_S-latissima_F_contig96.17355.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig96.17355.1
Unique Nameprot_S-latissima_F_contig96.17355.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length529
Homology
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BLAST of mRNA_S-latissima_F_contig96.17355.1 vs. uniprot
Match: D8LM12_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM12_ECTSI)

HSP 1 Score: 426 bits (1096), Expect = 2.640e-140
Identity = 295/529 (55.77%), Postives = 331/529 (62.57%), Query Frame = 0 
Query:   19 YRCARRNWSHHALEFLLDLVTDVAGFAWINLAEETLAQVFFVTAKNTFTYAVLACAASLGAMEIGSCIRSLLDWPPDVDETANQFDAGAFALPTSWLVTQAVHIALYGFFYRTRV-ENGQGGRGAENDEVDVRLAASLFLLAYAVLCSMVAARVIGGTVAAATVAGAGAGGAPDE---IIGGGVGGAESDHRQSDLVLRAVEAGGPFTAALSSDMASTL-------LPPSEXXXXXXXXXXXXXXGEGEL-----SRKERCRDGASXXXXXXXXXXXXXXXXXXXXXXXXXXXGASRARRDSLRRGIKAYMRLTVGMMVGWAYNLWGQVEFRQEELEFRFGPALGATVYAALSTALGVCIMVRGADKLDG---RGNGRAARRSALVDGGLGDD------WADPSKEDGGRGQGFEDAVRGFHARRMLVVVGGVGLMTGWAWEEAIDLMLEALVGDSADAGMIAAKLALAVVSTAVVLGREMR-AGHXXXXXXXXXXXXXXXXXXEDVGDRLTGVVGEVGNELSEPLMAT 521
            Y   RR  SHHALEFLLDLVTDV GFAWIN+AEE LAQVF V AK T  YA LA AASLGAME+GS  RSLLDWP   +ETANQFDAG+FALPTSWLVTQ VHI LYGFFYRT   + G+GG G E+D VDVRLAASLFLLAYA+LCS +A RVIGGTVAA                 +     GG  S   +SDLV+RA+ + G  TAA +SD A          +  S               G G++     S   +  DG          XXXXXXXXXXXXXX     G   ARRDSLRRG+KAYMRLTVGMMVGWAYNLWGQVEFRQEELEFRFGPALGA  YAALSTALGVC+MVRGADKL G   R NG     +  V G LG          +  +EDG   +  + AVR +HARR+LVVVGGV L+ GWAWEEA DL LE L+GD ADA  + AKL+LAV +T VVLGRE+R AG                    D+ D      GE G  L EPL+ T
Sbjct:   79 YSSGRRKLSHHALEFLLDLVTDVVGFAWINVAEEMLAQVFEVRAKTTLVYAALAFAASLGAMELGSLARSLLDWPVGFEETANQFDAGSFALPTSWLVTQGVHIGLYGFFYRTAGGQGGRGGDGEEDDVVDVRLAASLFLLAYALLCSALATRVIGGTVAAXXXXXXXXXXXXXXXXXLTRSNSGG--STGSRSDLVIRAISSYG-VTAAQASDAAXXXXXXXXGDVEASSTPSCGGGRNTSYREGGGDVADVGPSNSTKVGDGGGERGAAPLAXXXXXXXXXXXXXXAA---GGEDARRDSLRRGLKAYMRLTVGMMVGWAYNLWGQVEFRQEELEFRFGPALGAAAYAALSTALGVCVMVRGADKLAGSNRRKNGAGGAVNDSVGGALGSRPGGGYFHVERPEEDGEETRRRDAAVRSYHARRLLVVVGGVSLVVGWAWEEAFDLALEGLLGDEADAATVVAKLSLAVAATVVVLGREVRRAGRRDAGGG-------------DLHDH--NGAGEGGGGLLEPLVPT 586
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig96.17355.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM12_ECTSI2.640e-14055.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 170..310
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 368..415
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 329..347
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 311..328
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 416..434
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 107..129
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 87..106
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 149..169
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 130..148
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 454..471
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 348..367
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 435..453
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 472..528
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..86
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..65
NoneNo IPR availableTMHMMTMhelixcoord: 151..173
NoneNo IPR availableTMHMMTMhelixcoord: 311..330
NoneNo IPR availableTMHMMTMhelixcoord: 420..442
NoneNo IPR availableTMHMMTMhelixcoord: 345..367
NoneNo IPR availableTMHMMTMhelixcoord: 452..471
NoneNo IPR availableTMHMMTMhelixcoord: 68..90
NoneNo IPR availableTMHMMTMhelixcoord: 105..127
NoneNo IPR availableTMHMMTMhelixcoord: 276..298

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig96contigS-latissima_F_contig96:479525..484947 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig96.17355.1mRNA_S-latissima_F_contig96.17355.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig96 452940..485851 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig96.17355.1 ID=prot_S-latissima_F_contig96.17355.1|Name=mRNA_S-latissima_F_contig96.17355.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=529bp
MCGSDVRVPLASTGGPLAYRCARRNWSHHALEFLLDLVTDVAGFAWINLA
EETLAQVFFVTAKNTFTYAVLACAASLGAMEIGSCIRSLLDWPPDVDETA
NQFDAGAFALPTSWLVTQAVHIALYGFFYRTRVENGQGGRGAENDEVDVR
LAASLFLLAYAVLCSMVAARVIGGTVAAATVAGAGAGGAPDEIIGGGVGG
AESDHRQSDLVLRAVEAGGPFTAALSSDMASTLLPPSEKEDEEEEEEEKE
RGGEGELSRKERCRDGASDEEGGGGGRGAASVATASVVAAAAAAAGASRA
RRDSLRRGIKAYMRLTVGMMVGWAYNLWGQVEFRQEELEFRFGPALGATV
YAALSTALGVCIMVRGADKLDGRGNGRAARRSALVDGGLGDDWADPSKED
GGRGQGFEDAVRGFHARRMLVVVGGVGLMTGWAWEEAIDLMLEALVGDSA
DAGMIAAKLALAVVSTAVVLGREMRAGHHHHGEEGAGGGSGGRHHHEDVG
DRLTGVVGEVGNELSEPLMATRRRDGKQ*
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