prot_S-latissima_F_contig96.17346.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig96.17346.1
Unique Nameprot_S-latissima_F_contig96.17346.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length112
Homology
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BLAST of mRNA_S-latissima_F_contig96.17346.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 9.060e-25
Identity = 61/108 (56.48%), Postives = 68/108 (62.96%), Query Frame = 0 
Query:   13 SPELLARVAQLCVRVCRRRPELLREGLAPALADGHGGGGG-----------GDQGKLSSRFVFPALVRRFWESYAWRRDDRSSTQMVLRCVLHLAVHELRAAGAATAT 109
            SP  L RV QLC RVC +R  LLR+ LAPALAD   G              G + +L+ RFVFPALVRRFWES  W RD R S QMVLRC+LHLAV E+RAA  A  T
Sbjct: 3723 SPVRLTRVTQLCERVCAKRSTLLRDELAPALADKRDGDXXXXXXXDSVEQRGRRTQLARRFVFPALVRRFWESCVWGRDGRGSMQMVLRCILHLAVDEMRAAAKAART 3830
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BLAST of mRNA_S-latissima_F_contig96.17346.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 9.560e-23
Identity = 56/92 (60.87%), Postives = 64/92 (69.57%), Query Frame = 0 
Query:   22 QLCVRVCRRRPELLREGLAPALAD---GHGGGGGGD-------QGKLSSRFVFPALVRRFWESYAWRRDDRSSTQMVLRCVLHLAVHELRAA 103
            QLC RVC +R  LLR+ LAPALA+   G G GGGGD       + +L+  FVFPALVRRFWES  W RD R S QMVLRC+L LAV E+RAA
Sbjct: 3546 QLCERVCAKRSTLLRDELAPALAEKSNGDGDGGGGDSVGQSGRRTQLARSFVFPALVRRFWESCVWVRDGRGSMQMVLRCILQLAVDEMRAA 3637
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig96.17346.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J981_9PHAE9.060e-2556.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX0_ECTSI9.560e-2360.87Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig96contigS-latissima_F_contig96:372349..372684 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig96.17346.1mRNA_S-latissima_F_contig96.17346.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig96 372349..372686 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig96.17346.1 ID=prot_S-latissima_F_contig96.17346.1|Name=mRNA_S-latissima_F_contig96.17346.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=112bp
GGGGGSFVEASSSPELLARVAQLCVRVCRRRPELLREGLAPALADGHGGG
GGGDQGKLSSRFVFPALVRRFWESYAWRRDDRSSTQMVLRCVLHLAVHEL
RAAGAATATTTV
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