prot_S-latissima_F_contig96.17328.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig96.17328.1
Unique Nameprot_S-latissima_F_contig96.17328.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length195
Homology
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BLAST of mRNA_S-latissima_F_contig96.17328.1 vs. uniprot
Match: D8LUC9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC9_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 8.480e-59
Identity = 90/155 (58.06%), Postives = 120/155 (77.42%), Query Frame = 0 
Query:   41 PVVQEGLFVRSKWIFKREFFFKRDQIRSGMVNVAMKDNRLAEFANSGEVGYWKVERRSVPGAKRKLSMRG--GMDVLVLDVPEQGDNKDLIVSYEIPVAEGRYHANAVKFANEGSIFVAATKEELVGAAGAARKKIGTFSVDLKTLPPMIDRTFT 193
            P+VQ+G F ++ W   R+FFFKRDQ ++G   +  ++N+LA F NSGEVGYWK+ RR +PGA ++ S  G  G+D LVLD+PEQG  ++LIVSYEIP++ GRYH +++ FA +G+I+VA  KE+LVG A AARKKIG+FSVDL TL PM+DRTFT
Sbjct:   15 PLVQDGSFAKADWRITRDFFFKRDQAKNGADFLTARENKLARFNNSGEVGYWKLVRRPIPGAPKRQSPLGNEGIDYLVLDIPEQGPRRNLIVSYEIPISNGRYHPSSIMFAQKGTIYVANAKEQLVGPAAAARKKIGSFSVDLPTLEPMVDRTFT 169
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig96.17328.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC9_ECTSI8.480e-5958.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 35..194
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 30..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..34
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..34
score: 0.551
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig96contigS-latissima_F_contig96:97013..100687 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig96.17328.1mRNA_S-latissima_F_contig96.17328.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig96 96886..100814 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig96.17328.1 ID=prot_S-latissima_F_contig96.17328.1|Name=mRNA_S-latissima_F_contig96.17328.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=195bp
MMEQRGSWRVASASRAAVGVLLLALSAVIGLASGAGVVPGPVVQEGLFVR
SKWIFKREFFFKRDQIRSGMVNVAMKDNRLAEFANSGEVGYWKVERRSVP
GAKRKLSMRGGMDVLVLDVPEQGDNKDLIVSYEIPVAEGRYHANAVKFAN
EGSIFVAATKEELVGAAGAARKKIGTFSVDLKTLPPMIDRTFTA*
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