prot_S-latissima_F_contig96.17326.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig96.17326.1
Unique Nameprot_S-latissima_F_contig96.17326.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length242
Homology
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BLAST of mRNA_S-latissima_F_contig96.17326.1 vs. uniprot
Match: A0A6H5KFG5_9PHAE (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFG5_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.760e-10
Identity = 122/222 (54.95%), Postives = 137/222 (61.71%), Query Frame = 0 
Query:   21 PSALQTRTACRIFAAVTNPLSRLQTKSLSLQGALQTPEKLAAAAXXXXXXXXXXXXXXXXXXXREGGGRGGEVGHLILATPVKVPRGVFLLTGLVSLSLANNCLAAIPAAVGRLLCXXXXXXXXXXXXXXXXXLSRLSGSLRVLRLARNRLASPLPAAPLTGLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RAPTGLSDALPHLEDLTLP 241
            PS LQ RTA RI  A+++P SR + KS SLQ AL+ P   +A                                   +AT ++VPR +FL+T L SLSLA N L +          XXXXXXXXXXXXXXXXX  RLSG+LR+LR A NRL SPL A       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    RAP GLSDALP LE+LTLP
Sbjct: 1503 PSGLQARTAGRIATAISHPTSRREIKSFSLQAALRAPPGSSAPVAAAGA----------------------------MAT-IEVPRSIFLMTSLTSLSLAFNGLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLSGTLRLLRAAGNRLQSPLSATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFSERAPAGLSDALPFLEELTLP 1695
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig96.17326.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFG5_9PHAE1.760e-1054.95C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00019LEURICHRPTcoord: 183..196
score: 51.33
coord: 137..150
score: 48.12
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 101..239
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 109..240
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 134..157
e-value: 0.063
score: 22.4
coord: 111..133
e-value: 23.0
score: 10.4
coord: 183..206
e-value: 0.13
score: 21.4
coord: 207..231
e-value: 230.0
score: 2.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 96..241
e-value: 5.0E-27
score: 96.2
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 160..219
e-value: 8.1E-9
score: 35.1
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 113..134
score: 5.34
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 136..158
score: 7.119
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 160..181
score: 5.918
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 185..206
score: 7.458

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig96contigS-latissima_F_contig96:94375..95100 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig96.17326.1mRNA_S-latissima_F_contig96.17326.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig96 94375..95624 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig96.17326.1 ID=prot_S-latissima_F_contig96.17326.1|Name=mRNA_S-latissima_F_contig96.17326.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=242bp
VVPRCGSSSASSPPAPSPPHPSALQTRTACRIFAAVTNPLSRLQTKSLSL
QGALQTPEKLAAAAAAAAAATAAATAGSEAGARREGGGRGGEVGHLILAT
PVKVPRGVFLLTGLVSLSLANNCLAAIPAAVGRLLCLRSLDVSGNALTEL
PPSLSRLSGSLRVLRLARNRLASPLPAAPLTGLVSLRVLDLEHNALSEFP
EAVVLALTDLRSLKLAGNGFPSRAPTGLSDALPHLEDLTLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt