prot_S-latissima_F_contig96.17320.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig96.17320.1
Unique Nameprot_S-latissima_F_contig96.17320.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length1021
Homology
BLAST of mRNA_S-latissima_F_contig96.17320.1 vs. uniprot
Match: D7G201_ECTSI (Sel1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G201_ECTSI)

HSP 1 Score: 914 bits (2362), Expect = 0.000e+0
Identity = 618/1008 (61.31%), Postives = 718/1008 (71.23%), Query Frame = 0
Query:   33 RLLSATSAALLRVKGVTIRSGSSGQILHPRSVTVVRSLSPVSSSRTRGGDETRASPRSSLQIASPPDHGRAKTSEEHSQERSISSCSVVTSARDSTSTSTEGVIQDGDRSKVSELYDDDDSGETTEDAKSKGSKIPTTNDDKGQAATPRSRWATTLMTSTLAREMATKATGKTTLGGGISLLPRPQDAGDKVEYLIMVCKAAQTYASIQAPKVLRVRDGQHMINQLRNVTIDLGRQHDKILAVYDTREVRRAGDRLGETLKEVYDLLGDVEATAIMFGRKKGFGKRVSALVHDIGIHANSLLAATSLAIADRPNVLYMTNPGTGEPPAPQLEELIRKCIEGDKYFFGRGEKPSLRKAFEAYSWSAERGCAEAMYMSAWMYGVGS-YVETDPEKRQLWLQRAVDKGYAPAMNDLAVILLGEADRLDESHPQLNAD----STLRGPGTSKADPMGL-------PGEKREGGNWREGLDGGVEEEGRVGVETGEEKNEXXXXRGGQERGDGS----GTSEEASMSPEQAQLFENVMEKRKRAMTLLQEAAKTGHTDAMTNLGNMQEAMGYFEDARNWYSLAAEPSESANNPRAQTYLGTLFYEGRGITQDHDEAVKWFRRGARQGNHQACQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAYLLARDALHTLATTARQAPPG---------VAGTGLKFEDPSRGMMKIGELSSEASSQMWRETTSQLREAADLFRRAADHGIADASYQLGRLYQQGLGIPLDPVAAFENFLAAADGVVVHPTAAACVGDMLYGGVGCLRDYGEAMRYYLRAAHAGEASSANAVGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNAALLLERGDPFSAIASAAGLPIPSTRHHASSSSSSAPQLPLRPT----TLPLGQRERSATTASXXXXXXXXXXSHVGGHSNGRLPGAAGARRKKPQAQGDSRNLWGDRPRALRMFERAAELGHTGATPEVHRLRLRERMDHLV 1011
            RLLSATSAAL RVKG+T+RSG+SG++L+PRSVT+V  L  +S SR + G +   + R+S +  S  D   ++   E+ +    S+  V    +D      +G     ++ K+S L+DD++S    E+   +G+ IP+T+ +   AATPRS+WA TLM STLARE   KATGK  +   + LLP P++A +K+EYL+MVCKAAQ YAS QA ++ RVRDGQHMINQLR+V  DLGRQ +K+LAVYDTREVR + DRLGETLK VYDLLGDVE TAIMFGRK+GFGKRV+ALVHDIG  AN+LLAATSLAIADRPNVLYM + G GEPPAPQ +EL++ CIEGDK+FFGRGE P++ KAFEAY+W+AERGCAEAMYM AWMY VGS  V+ D E+ Q WL+RAVDKGYAPAMNDLA  LL +ADR + +HP+L AD      +    T  AD  GL       P +   GG+          EE             XXXX       DG        + +S+ PE AQLFE VMEKRKR+M LLQ+AAKTGHT+AMTNLGNMQEAMGYFEDAR+WYSLAA PSESANNPRAQ YLGTLFYEGRG+T+D DEAVKWFR  ARQG  QAC  XXXXXXXXXXXXXXXXXXXXXXXXXX          LAYLLARDALH LA  ARQAPPG         VAGTGL+FEDPSRG+MK   LSS+ASS+ WRE+T+QLREAADLFRRAAD GI DASYQLGRLYQQGLGIPL+PVA+FENFLAAADG VVHPTAAACVGDMLY G GCLRDYG A+RYY+RAAHAGEA+SANA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      LERGDP SAIASAAGLP+   +           QLPLRP+    T   G    +  T                G  +G L  A+G+     Q     R LWG+RP AL+MF+RAAELGH  A  EVHRLRLRER+DHL+
Sbjct:   78 RLLSATSAALTRVKGMTLRSGTSGRVLNPRSVTLVSGL--LSPSRGKKGVDNDGADRTSEEDRSRKDRPFSQGHVENDK----SAPWVQDPGQDD-----DGGGTKSNKQKLSVLFDDEESN--AENGTEEGASIPSTSTNDSNAATPRSKWAATLMASTLARE---KATGKAMVRNRVDLLPHPREAANKIEYLVMVCKAAQAYASTQAARLSRVRDGQHMINQLRDVASDLGRQAEKMLAVYDTREVRNSADRLGETLKGVYDLLGDVEGTAIMFGRKRGFGKRVTALVHDIGTRANALLAATSLAIADRPNVLYMADTGGGEPPAPQQQELLKMCIEGDKFFFGRGENPNMSKAFEAYAWAAERGCAEAMYMMAWMYRVGSGSVDADAEQCQRWLERAVDKGYAPAMNDLATTLLEQADRTERAHPELKADVAAADVIADSPTDDAD-RGLGATRPPTPDDHTSGGS----------EEXXXXXXXXXXXXXXXXXXXXXXXXDGGRQVEAEEDASSLPPELAQLFEQVMEKRKRSMQLLQDAAKTGHTEAMTNLGNMQEAMGYFEDARSWYSLAAHPSESANNPRAQNYLGTLFYEGRGVTKDRDEAVKWFRLSARQGFPQACXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGSISATNSLAYLLARDALHALAAAARQAPPGLDQRNLSAGVAGTGLQFEDPSRGIMKPAGLSSQASSKAWRESTAQLREAADLFRRAADSGIGDASYQLGRLYQQGLGIPLEPVASFENFLAAADGEVVHPTAAACVGDMLYTGTGCLRDYGAALRYYVRAAHAGEATSANAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERGDPLSAIASAAGLPMFQEQQ----------QLPLRPSSGFLTSMAGAGCPATATPPRCSPPAGGGLFGANGGDDGDLAVASGSTGGVGQ-----RPLWGNRPLALQMFQRAAELGHPEAMREVHRLRLRERIDHLM 1043          
BLAST of mRNA_S-latissima_F_contig96.17320.1 vs. uniprot
Match: A0A836CC33_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC33_9STRA)

HSP 1 Score: 410 bits (1055), Expect = 4.460e-119
Identity = 273/693 (39.39%), Postives = 352/693 (50.79%), Query Frame = 0
Query:  181 RSRWATTLMTSTLAREMA-----TKATGKTTLGGGISLLPRPQDAGDKVEYLIMVCKAAQTYASIQAPKVLRVRDGQHMINQLRNVTIDLGRQHDKILAVYDTREVRRAGDRLGETLKEVYDLLGDVEATAIMFGRKKGFGKRVSALVHDIGIHANSLLAATSLAIADRPNVLYMTNPGTGEPPAPQLEELIRKCIEGDKYFFGRGEKPSLRKAFEAYSWSAERGCAEAMYMSAWMYGVGSYVETDPEKRQLWLQRAVDKGYAPAMNDLAVILLGEADRLDESHPQLNADSTLRGPGTSKADPMGLPGEKREGGNWREGLDGGVEEEGRVGVETGEEKNEXXXXRGGQERGDGSGTSEEASMSPEQAQLFENVMEKRKRAMTLLQE-------------------------AAKTGHTDAMTNLGNMQEAMGYFEDARNWYSLAAEPSES-ANNPRAQTYLGTLFYEGRGITQDHDEAVKWFRRGARQGNHQACQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------LAYLLARDALHTLATTARQAPP--GVAGT------GLKFEDPSRGMMKIGELSSEAS---------------------SQMWRETTSQLREAADLFRRAADHGIADASYQLGRLYQQGLGIPLDPVAAF 781
            RSRWA TL+ ST +                      + +PR +D G+KV++L+ VCK+ + YA     K+  VR G  +I  LR+   DL RQ DKILAVYDT EVRR+ DRLG TL  V+++L DVE  A MFGRKKGFGKRV ALV ++G +ANSLLAATSLAIADRP +LYM +   G PP  +LEELI++C+EGD++++GR   P+  KA  AY W+AERG  EA YM AWMY  G +V  D E+   WL+RAV++GYAPAMN+LA++LL EA+ +  + P++ A         + AD  G                              + +       G  +R        + ++SPE A  F    E RKRA +LLQ                          AA+ GH DAM +LG++ E  G    AR WY LAA P +  ANN RAQ +LG +++ GRG  +D  EA +WF+R A+QG   AC N                                                                    LAYLLAR+ALH L   A Q  P  G  G       G++FEDP RG M+  E S+ AS                     + + RE T QL EAA+LFRRAAD G ADASYQLGRLY+QGLG+P+DP+AAF
Sbjct:  288 RSRWAQTLLLSTTSSAFKGXXXXXXXXXXXXXXXXXATMPREEDVGNKVDFLVAVCKSTEVYAKQLEAKLGTVRSGVALIEGLRDTHADLKRQRDKILAVYDTLEVRRSADRLGTTLTHVFEVLSDVERAARMFGRKKGFGKRVQALVQELGTNANSLLAATSLAIADRPQMLYMVDADDGAPPKHKLEELIQRCLEGDRWYYGREGPPNFEKAHAAYLWAAERGFGEAQYMLAWMYKHGHFVTADAERCTHWLERAVERGYAPAMNELALLLLEEAEGISAAWPEVQAAFDELASKAADADAAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXARDVRGSAAAALGATQR------RLQRTLSPEAAAKFAAAAELRKRAQSLLQRVRLCVRREVRCVRQLCAAAVPAAVSAARLGHADAMASLGSLLEEAGRVRAARRWYELAAAPGDGGANNARAQNFLGRMYHSGRGAARDPREAARWFKRAAKQGLAAACNNLGLCYEAGAGVQKVGAGKRKVCRRFADTSPFCMDAATGAARASAHDTSKAIELYRQGVEGGSASACGNLAYLLAREALHALGCLAGQGTPLRGDGGALQWGRGGMQFEDPQRGAMESPEASAAASQCTLARCVSPLDVPLETTMSAADVRREMTRQLLEAAELFRRAADAGSADASYQLGRLYEQGLGMPVDPMAAF 974          
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig96.17320.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G201_ECTSI0.000e+061.31Sel1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CC33_9STRA4.460e-11939.39MYND-type domain-containing protein n=1 Tax=Tribon... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 568..599
e-value: 190.0
score: 2.6
coord: 831..866
e-value: 9.6E-7
score: 38.4
coord: 795..830
e-value: 0.14
score: 21.3
coord: 963..991
e-value: 220.0
score: 1.9
coord: 402..437
e-value: 0.17
score: 21.0
coord: 757..792
e-value: 8.7E-5
score: 31.9
coord: 604..639
e-value: 3.5E-9
score: 46.5
coord: 640..675
e-value: 3.9E-9
score: 46.3
coord: 367..401
e-value: 150.0
score: 3.5
IPR006597Sel1-like repeatPFAMPF08238Sel1coord: 975..991
e-value: 0.51
score: 11.1
coord: 642..675
e-value: 7.1E-5
score: 23.3
coord: 802..829
e-value: 0.037
score: 14.7
coord: 604..639
e-value: 3.1E-7
score: 30.9
coord: 831..866
e-value: 1.0E-6
score: 29.2
coord: 757..789
e-value: 0.0022
score: 18.6
coord: 742..755
e-value: 100.0
score: 3.8
coord: 402..437
e-value: 0.13
score: 12.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 540..704
e-value: 2.4E-38
score: 133.8
coord: 370..461
e-value: 1.8E-13
score: 52.2
coord: 714..890
e-value: 8.5E-35
score: 122.2
NoneNo IPR availablePANTHERPTHR11102SEL-1-LIKE PROTEINcoord: 743..991
coord: 382..688
NoneNo IPR availablePANTHERPTHR11102:SF150coord: 743..991
NoneNo IPR availablePANTHERPTHR11102:SF150coord: 382..688
NoneNo IPR availablePANTHERPTHR11102:SF150coord: 579..789
NoneNo IPR availablePANTHERPTHR11102SEL-1-LIKE PROTEINcoord: 579..789
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 740..879
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 548..681
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 376..450

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig96contigS-latissima_F_contig96:19595..28546 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig96.17320.1mRNA_S-latissima_F_contig96.17320.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig96 19595..28546 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig96.17320.1 ID=prot_S-latissima_F_contig96.17320.1|Name=mRNA_S-latissima_F_contig96.17320.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=1021bp
GKVRSTSQRTKTKLIDRSEDTGAANDEKNMSKRLLSATSAALLRVKGVTI
RSGSSGQILHPRSVTVVRSLSPVSSSRTRGGDETRASPRSSLQIASPPDH
GRAKTSEEHSQERSISSCSVVTSARDSTSTSTEGVIQDGDRSKVSELYDD
DDSGETTEDAKSKGSKIPTTNDDKGQAATPRSRWATTLMTSTLAREMATK
ATGKTTLGGGISLLPRPQDAGDKVEYLIMVCKAAQTYASIQAPKVLRVRD
GQHMINQLRNVTIDLGRQHDKILAVYDTREVRRAGDRLGETLKEVYDLLG
DVEATAIMFGRKKGFGKRVSALVHDIGIHANSLLAATSLAIADRPNVLYM
TNPGTGEPPAPQLEELIRKCIEGDKYFFGRGEKPSLRKAFEAYSWSAERG
CAEAMYMSAWMYGVGSYVETDPEKRQLWLQRAVDKGYAPAMNDLAVILLG
EADRLDESHPQLNADSTLRGPGTSKADPMGLPGEKREGGNWREGLDGGVE
EEGRVGVETGEEKNEEKEERGGQERGDGSGTSEEASMSPEQAQLFENVME
KRKRAMTLLQEAAKTGHTDAMTNLGNMQEAMGYFEDARNWYSLAAEPSES
ANNPRAQTYLGTLFYEGRGITQDHDEAVKWFRRGARQGNHQACQNLGICY
QTGTGVAKDLPKAVELFRQAVEAGSVSAANNLAYLLARDALHTLATTARQ
APPGVAGTGLKFEDPSRGMMKIGELSSEASSQMWRETTSQLREAADLFRR
AADHGIADASYQLGRLYQQGLGIPLDPVAAFENFLAAADGVVVHPTAAAC
VGDMLYGGVGCLRDYGEAMRYYLRAAHAGEASSANAVGLMHELGRGAVRD
LEAAREWYERAAELGSADGAFNAALLLERGDPFSAIASAAGLPIPSTRHH
ASSSSSSAPQLPLRPTTLPLGQRERSATTASPPTVAGGGSSSHVGGHSNG
RLPGAAGARRKKPQAQGDSRNLWGDRPRALRMFERAAELGHTGATPEVHR
LRLRERMDHLVGHGREYKAP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf