prot_S-latissima_F_contig955.17275.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-latissima_F_contig955.17275.1
Unique Name	prot_S-latissima_F_contig955.17275.1
Type	polypeptide
Organism	Saccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length	314

Homology

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BLAST of mRNA_S-latissima_F_contig955.17275.1 vs. uniprot
Match: A0A6H5J8E7_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8E7_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 7.160e-111
Identity = 224/322 (69.57%), Postives = 237/322 (73.60%), Query Frame = 0

Query:    3 EQGRRDKNDVFVGNIPFGTTEEQIHTIFSEAGGVVNIRMVSDFETGKPKGFAFVEYEDAATALSAIRNLNGFECNGRPLRVNFSNNSSLGAEQQRGEKAPQQERTVKGVVMQMGAHEVYDVVSNMKQLVETEPDKAKQMFVSHPQVAEALLHMQVRLGMLKADDVPSLQTPXXXXXVG---GAIMLGKGAQLPLLVPTSAPAQFQQAGPPTAYPPXXXXXXXXXAVSAQALGWGQGNPAKAIPTNAPQGHFQQPQLQTQVVPLRPXXXXXXXXXXXXXXXXXXXX-----LQPPQPANSWG-ANNP-ADIKSRDPRA-RYNR 313
            +  RRDKNDVFVGNIPFGTTEEQ+H IFSEAGG+V+IR+VSDFETGKPKGFAFVEYEDAATALSAIRNLNG++CNGR LRVNFSNNSSLGAEQQRGEKAPQQERTVKGVVMQMG +EV+D+VSNMKQLVE EPDKAKQMFVSHPQVAEALLHMQVRLGM KA+DVPSL             GAIMLG GA LP LVP   P QFQQ  PPT                   LGWGQ                Q P    QV+ LRPXXXXXXXXXXXXXXXXXXXX     LQPPQ    WG A NP A+IK RDPR  RYNR
Sbjct:    2 QHSRRDKNDVFVGNIPFGTTEEQLHEIFSEAGGIVSIRLVSDFETGKPKGFAFVEYEDAATALSAIRNLNGYDCNGRLLRVNFSNNSSLGAEQQRGEKAPQQERTVKGVVMQMGIYEVWDIVSNMKQLVEKEPDKAKQMFVSHPQVAEALLHMQVRLGMFKAEDVPSLFVKAEEDVTKKKPGAIMLGTGAILPQLVPP--PGQFQQ--PPTN----------------PTLGWGQA--------------AQHPIQTQQVMTLRPXXXXXXXXXXXXXXXXXXXXXXXPMLQPPQSQGGWGTAVNPKAEIKPRDPRGGRYNR 289

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BLAST of mRNA_S-latissima_F_contig955.17275.1 vs. uniprot
Match: D8LMG1_ECTSI (Phosphatidylinositol-3-phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG1_ECTSI)

HSP 1 Score: 319 bits (817), Expect = 2.050e-96
Identity = 177/235 (75.32%), Postives = 188/235 (80.00%), Query Frame = 0

Query:    3 EQGRRDKNDVFVGNIPFGTTEEQIHTIFSEAGGVVNIRMVSDFETGKPKGFAFVEYEDAATALSAIRNLNGFECNGRPLRVNFSNNSSLGAEQQRGEKAPQQERTVKGVVMQMGAHEVYDVVSNMKQLVETEPDKAKQMFVSHPQVAEALLHMQVRLGMLKADDVPSL---QTPXXXXXVGGAIMLGKGAQLPLLVPTSAPAQFQQAGPPTAYPPXXXXXXXXXAVSAQALGWGQ 234
            + GRRDKNDVFVGNIPFGTTEEQ+H IFSEAGG+V+IR+V DFETGKPKGFAFVEYEDAATALSAIRNLNG++CNGR LRVNFSNNSSLGAEQQRGEKAPQQERTVKGVVMQMG +EV+D+VSNMKQLVE EPDKAKQMFVSHPQVAEALLHMQVRLGM KA+DVPSL             GAIMLG GA LP LVP  AP QFQQ  PPT                   LGWGQ
Sbjct:    2 QHGRRDKNDVFVGNIPFGTTEEQLHEIFSEAGGIVSIRLVLDFETGKPKGFAFVEYEDAATALSAIRNLNGYDCNGRLLRVNFSNNSSLGAEQQRGEKAPQQERTVKGVVMQMGIYEVWDIVSNMKQLVEKEPDKAKQMFVSHPQVAEALLHMQVRLGMFKAEDVPSLFIKAKEDVSKKKPGAIMLGTGAILPQLVP--APGQFQQ--PPTN----------------PTLGWGQ 216

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BLAST of mRNA_S-latissima_F_contig955.17275.1 vs. uniprot
Match: A0A835YTP2_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTP2_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.790e-56
Identity = 100/164 (60.98%), Postives = 124/164 (75.61%), Query Frame = 0

Query:   14 VGNIPFGTTEEQIHTIFSEAGGVVNIRMVSDFETGKPKGFAFVEYEDAATALSAIRNLNGFECNGRPLRVNFSNNSSLGAEQ----QRGEKAPQQERTVKGVVMQMGAHEVYDVVSNMKQLVETEPDKAKQMFVSHPQVAEALLHMQVRLGMLKADDVPSLQTP 173
            VGNIP+GTTEEQ+H IFSEAG VVNIR V D ETGKPKG+AFVE+ED+ATALSAIRNLNG+ECNGR LRVN+S+NS+L  E+      G+     ERTV+ V+  M   EV  +++ +K+  E EPD+AKQM  S PQVAEALL MQ+RLGM+K   +P++  P
Sbjct:    1 VGNIPYGTTEEQLHAIFSEAGRVVNIRSVVDHETGKPKGYAFVEFEDSATALSAIRNLNGYECNGRQLRVNYSSNSALTGEKGGXXXXGKALEVGERTVRMVIAGMPLEEVRGLLTQLKEFAEKEPDQAKQMLTSQPQVAEALLQMQLRLGMVKPGQIPAVAPP 164

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BLAST of mRNA_S-latissima_F_contig955.17275.1 vs. uniprot
Match: A0A7S4V4Q8_9STRA (Hypothetical protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V4Q8_9STRA)

HSP 1 Score: 148 bits (373), Expect = 6.160e-38
Identity = 82/193 (42.49%), Postives = 114/193 (59.07%), Query Frame = 0

Query:    9 KNDVFVGNIPFGTTEEQIHTIFSEAGGVVNIRMVSDFETGKPKGFAFVEYEDAATALSAIRNLNGFECNGRPLRVNFSNNS-------SLGAEQQRGEKAPQQER-------------TVKGVVMQMGAHEVYDVVSNMKQLVETEPDKAKQMFVSHPQVAEALLHMQVRLGMLKADDVPSLQTPXXXXXVGG 181
            K+D+FVGN+ F TTEEQ+   FSE G +V +RMV D ETGKP+GFAF+E+ED   ALSAIRN+N +E NGR +RVNFSN+S        LG +        Q  R              V   +  +   E+YDVV+ +K++ +T+PD+A+++  SHPQ+ EA+LH+  +L M+K     S   P      GG
Sbjct:   44 KHDIFVGNLAFSTTEEQLIQAFSELGRLVKVRMVKDLETGKPRGFAFIEFEDPQAALSAIRNMNDYELNGRRIRVNFSNSSHLETLAGELGMDMSHANSQRQASRDAAAAKEDKSGTQAVAESLKTLTKGEMYDVVAKLKEIADTDPDEARRLLCSHPQLPEAILHLMSKLDMIKQPPPSSGLDPTAAGMTGG 236

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BLAST of mRNA_S-latissima_F_contig955.17275.1 vs. uniprot
Match: A0A7S3Q8Z5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q8Z5_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.780e-37
Identity = 80/200 (40.00%), Postives = 117/200 (58.50%), Query Frame = 0

Query:    4 QGRRDKNDVFVGNIPFGTTEEQIHTIFSEAGGVVNIRMVSDFETGKPKGFAFVEYEDAATALSAIRNLNGFECNGRPLRVNFSNNSSL----------------------------------------GAEQQRGEKAPQQERTVKGVVMQMGAHEVYDVVSNMKQLVETEPDKAKQMFVSHPQVAEALLHMQVRLGMLK 163
            Q ++ K+D+FVGN+ F TTEEQ+H +FSE G V+ +RMV+D +TGKP+GFAFVE+ED   ALSAIRN++ +E NGR LRVNFSN+S L                                        G+  +RG  A    + V   +  M   E+YD++S +KQ+ +T+PD+A+++   HPQ+ EA+L +  +L M+K
Sbjct:   21 QNQQQKHDIFVGNLAFTTTEEQLHQVFSEVGRVIKVRMVNDLDTGKPRGFAFVEFEDPQAALSAIRNMDDYELNGRKLRVNFSNSSHLETLAGQLGMDMKKKDANVTIGAGMGNAAGASAGGVPSHQSGSSGRRG-GADNGTQAVSNALKNMSKGEMYDIISKLKQIADTDPDEARKIVSGHPQLPEAILFLMSQLDMIK 219

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BLAST of mRNA_S-latissima_F_contig955.17275.1 vs. uniprot
Match: A0A7S4EPR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EPR9_9STRA)

HSP 1 Score: 145 bits (366), Expect = 3.150e-37
Identity = 78/177 (44.07%), Postives = 111/177 (62.71%), Query Frame = 0

Query:    9 KNDVFVGNIPFGTTEEQIHTIFSEAGGVVNIRMVSDFETGKPKGFAFVEYEDAATALSAIRNLNGFECNGRPLRVNFSNNSSLGA------------EQQRGEKAPQQERT----------VKGVVMQMGAHEVYDVVSNMKQLVETEPDKAKQMFVSHPQVAEALLHMQVRLGMLK 163
            K+D+FVGN+ F TTEEQ+H  FSE G V+ +R+V+D ETGKP+GFAFVE+ED   ALSAIRN+N +E NGR LRVNFSN+S L A            + QR   +     T          V   +  M   E+YD+V+ MK++ + +PD+A+++   HPQ+ EA+L +  +L M++
Sbjct:   24 KHDIFVGNLAFNTTEEQLHQTFSEIGRVIKVRLVTDVETGKPRGFAFVEFEDPQAALSAIRNMNEYELNGRRLRVNFSNSSHLEALASKLGMDLSQHQTQRSSSSSSNNATQQTHGAGTNAVADSLKSMSKGEMYDIVAKMKEIADRDPDEARRLLAGHPQLPEAMLFIMSKLDMVQ 200

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BLAST of mRNA_S-latissima_F_contig955.17275.1 vs. uniprot
Match: A0A1Z5KRC4_FISSO (Cleavage stimulation factor subunit 2 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRC4_FISSO)

HSP 1 Score: 142 bits (357), Expect = 3.960e-36
Identity = 77/174 (44.25%), Postives = 113/174 (64.94%), Query Frame = 0

Query:    9 KNDVFVGNIPFGTTEEQIHTIFSEAGGVVNIRMVSDFETGKPKGFAFVEYEDAATALSAIRNLNGFECNGRPLRVNFSNNS-------SLGAEQQRGEKAPQQERT------------VKGVVMQMGAHEVYDVVSNMKQLVETEPDKAKQMFVSHPQVAEALLHMQVRLGMLK 163
            KND+FVGN+ F TTEEQ+H  FS+ G V+N+R+V+D +TGKP+GFAFVE++DA  ALSAIRN+N +E NGR LRVNFSN+S        LG +  + ++  Q ++             V   +  M   E+YDVV+ +K+L   + ++A+++  SHPQ+ EA+L    +L M+K
Sbjct:   30 KNDIFVGNLAFNTTEEQLHQAFSDIGRVINVRLVTDVDTGKPRGFAFVEFQDAQAALSAIRNMNDYELNGRRLRVNFSNSSHLEDLAGKLGMDLSQAKRQQQNQQVGTNAAPTPGTSAVADALKAMSKAEMYDVVAKLKEL---DAEEARRLLASHPQLPEAILFCMSKLDMVK 200

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BLAST of mRNA_S-latissima_F_contig955.17275.1 vs. uniprot
Match: A0A448ZLV1_9STRA (RRM domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZLV1_9STRA)

HSP 1 Score: 141 bits (356), Expect = 8.830e-36
Identity = 78/185 (42.16%), Postives = 113/185 (61.08%), Query Frame = 0

Query:    3 EQGRRDKNDVFVGNIPFGTTEEQIHTIFSEAGGVVNIRMVSDFETGKPKGFAFVEYEDAATALSAIRNLNGFECNGRPLRVNFSNNSSLGAEQQR-GEKAPQQE-----------------------RTVKGVVMQMGAHEVYDVVSNMKQLVETEPDKAKQMFVSHPQVAEALLHMQVRLGMLK 163
            +Q  + K+D+FVGN+ F TTEEQ+H  FSE G V+ +R+V+D ETGKP+GFAFVE+ED   ALSAIRN+N +E NGR LRVNFSN+S L A   + G    Q +                         V   +  M   E+YD+V+ MK++ + +PD+A+++   HPQ+ EA+L +  +L M++
Sbjct:   16 QQQNQLKHDIFVGNLAFNTTEEQLHQTFSEIGRVIKVRLVTDVETGKPRGFAFVEFEDPQAALSAIRNMNDYELNGRRLRVNFSNSSHLEALASKLGMDLSQHQSRQSXXXXXXXXXXXXPHHSAGTNAVADSLKTMSKGEMYDIVAKMKEIADRDPDEARRLLAGHPQLPEAMLFIMSKLDMVQ 200

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BLAST of mRNA_S-latissima_F_contig955.17275.1 vs. uniprot
Match: A0A6U3ZUV0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3ZUV0_9STRA)

HSP 1 Score: 141 bits (355), Expect = 9.820e-36
Identity = 74/183 (40.44%), Postives = 109/183 (59.56%), Query Frame = 0

Query:    9 KNDVFVGNIPFGTTEEQIHTIFSEAGGVVNIRMVSDFETGKPKGFAFVEYEDAATALSAIRNLNGFECNGRPLRVNFSNNSSL----------------------------GAEQQRGEKAPQQERTVKGVVMQMGAHEVYDVVSNMKQLVETEPDKAKQMFVSHPQVAEALLHMQVRLGMLK 163
            K+D+FVGN+ F TTEEQ++  FSE G ++ +RMVSD ETGKP+GFAF+E+ED   ALSAIRN+N +E NGR +RVNFSN+S L                            G +  +   A    R V   +  M   E+YDV++ +K++ ++ P++A+++   HPQ+ EA+L+    L M+K
Sbjct:   33 KHDIFVGNLAFNTTEEQLYQAFSELGRIIKVRMVSDQETGKPRGFAFIEFEDPQAALSAIRNMNEYEINGRKIRVNFSNSSHLETLAGQMGMDLSNVTGPKKDDNTTNQAQGGDGTQSSAAVAGSRAVASALKSMNKGEMYDVIAKLKEISDSNPEEARKILTQHPQLPEAILYCMSELDMIK 215

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BLAST of mRNA_S-latissima_F_contig955.17275.1 vs. uniprot
Match: A0A7R9W4X6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W4X6_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.420e-35
Identity = 73/163 (44.79%), Postives = 106/163 (65.03%), Query Frame = 0

Query:    4 QGRRDKNDVFVGNIPFGTTEEQIHTIFSEAGGVVNIRMVSDFETGKPKGFAFVEYEDAATALSAIRNLNGFECNGRPLRVNFSNNS-------SLGAE-----QQRGEKAPQQ------ERTVKGVVMQMGAHEVYDVVSNMKQLVETEPDKAKQMFVSHPQV 148
            + ++ K+D+FVGN+ F TTEEQ+H  FSE G ++ +RMV+D ETGKP+GFAF+E+ED   ALSAIRN+N +E NGR +RVNFSN+S        LG +     QQR   A +        + V   +  M   E+YDVV+ +K++ E +PD+A+++   HPQ+
Sbjct:    1 KNQQQKHDIFVGNLAFSTTEEQLHQAFSEIGKIIKVRMVTDLETGKPRGFAFIEFEDPQAALSAIRNMNDYELNGRRIRVNFSNSSHLETLAGKLGMDMSQHTQQRSGGAGKSGDGGSGTQAVAESLKGMSKGEMYDVVAKLKEIAEKDPDEARRLLCGHPQL 163

The following BLAST results are available for this feature:

BLAST of mRNA_S-latissima_F_contig955.17275.1 vs. uniprot

BLAST of mRNA_S-latissima_F_contig955.17275.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5J8E7_9PHAE	7.160e-111	69.57	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D8LMG1_ECTSI	2.050e-96	75.32	Phosphatidylinositol-3-phosphatase n=1 Tax=Ectocar...	[more]
A0A835YTP2_9STRA	1.790e-56	60.98	RRM domain-containing protein (Fragment) n=1 Tax=T...	[more]
A0A7S4V4Q8_9STRA	6.160e-38	42.49	Hypothetical protein n=5 Tax=Ditylum brightwellii ...	[more]
A0A7S3Q8Z5_9STRA	2.780e-37	40.00	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]
A0A7S4EPR9_9STRA	3.150e-37	44.07	Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit...	[more]
A0A1Z5KRC4_FISSO	3.960e-36	44.25	Cleavage stimulation factor subunit 2 n=2 Tax=Fist...	[more]
A0A448ZLV1_9STRA	8.830e-36	42.16	RRM domain-containing protein n=1 Tax=Pseudo-nitzs...	[more]
A0A6U3ZUV0_9STRA	9.820e-36	40.44	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]
A0A7R9W4X6_9STRA	1.420e-35	44.79	Hypothetical protein (Fragment) n=1 Tax=Pseudictyo...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 11..84 e-value: 3.9E-28 score: 109.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 12..82 e-value: 9.8E-24 score: 83.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 10..88 score: 20.576
IPR025742	Cleavage stimulation factor subunit 2, hinge domain	PFAM	PF14327	CSTF2_hinge	coord: 108..168 e-value: 3.6E-10 score: 40.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..111 e-value: 2.1E-29 score: 104.1
None	No IPR available	PANTHER	PTHR45735	FAMILY NOT NAMED	coord: 5..291
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 7..96

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-latissima_F_contig955	contig	S-latissima_F_contig955:16738..43935 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Saccharina latissima female	2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90	2022-09-16
OGS1.0 of Saccharina latissima SLPER63f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-latissima_F_contig955.17275.1	mRNA_S-latissima_F_contig955.17275.1	Saccharina latissima SLPER63f female	mRNA	S-latissima_F_contig955 16066..44023 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-latissima_F_contig955.17275.1 ID=prot_S-latissima_F_contig955.17275.1|Name=mRNA_S-latissima_F_contig955.17275.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=314bp
MPEQGRRDKNDVFVGNIPFGTTEEQIHTIFSEAGGVVNIRMVSDFETGKP
KGFAFVEYEDAATALSAIRNLNGFECNGRPLRVNFSNNSSLGAEQQRGEK
APQQERTVKGVVMQMGAHEVYDVVSNMKQLVETEPDKAKQMFVSHPQVAE
ALLHMQVRLGMLKADDVPSLQTPPPPPVVGGAIMLGKGAQLPLLVPTSAP
AQFQQAGPPTAYPPTLQPPPGPPAVSAQALGWGQGNPAKAIPTNAPQGHF
QQPQLQTQVVPLRPPPPPPQQQQQQQQQQQQQQQLQPPQPANSWGANNPA
DIKSRDPRARYNR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR025742	CSTF2_hinge
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf