prot_S-latissima_F_contig953.17272.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig953.17272.1
Unique Nameprot_S-latissima_F_contig953.17272.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length232
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig953.17272.1 vs. uniprot
Match: D8LTM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM4_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 1.360e-99
Identity = 146/197 (74.11%), Postives = 171/197 (86.80%), Query Frame = 0 
Query:    1 MICVGFAVSLCLNVGSLTACQEGFFTAEVKCLSPGASETVLNDLGVWVGWRRAVANGREEAVFDLEELSMTGAAMGIMTVVGHATDSLVNAVGLASLLYARRKPIEEVQSRLIKRICLASLAMAGWLMGTTVIGFLLAVKGPIGSAAIAFYSQ-FDLTCRSSVSVGVDYAYAMTTLTILCQFFVGIVALPKPSRWGP 196
            MIC+GFAVSL LN+GS TA +EG+F AEVKCL  GAS+TVL DLGVWVGWR+AVAN  E   F+LEE+SM GA MGI+TVVG+ATD L+NAVGLA LLY RRKP++E Q R++KR+CLASLAMAGWL+GTT+IGFL+AVKGPIG+AA+AFYS+ FDL C +SVSV VDYAYAM TLT+LCQFF+GIVALPKPSR  P
Sbjct:    1 MICIGFAVSLILNLGSFTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANSDEAVTFNLEEMSMVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWLLGTTIIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVSVDYAYAMATLTVLCQFFIGIVALPKPSRSSP 197
[Close]
BLAST of mRNA_S-latissima_F_contig953.17272.1 vs. uniprot
Match: A0A6H5JU38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU38_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 6.110e-91
Identity = 141/197 (71.57%), Postives = 164/197 (83.25%), Query Frame = 0 
Query:    1 MICVGFAVSLCLNVGSLTACQEGFFTAEVKCLSPGASETVLNDLGVWVGWRRAVANGREEAVFDLEELSMTGAAMGIMTVVGHATDSLVNAVGLASLLYARRKPIEEVQSRLIKRICLASLAMAGWLMGTTVIGFLLAVKGPIGSAAIAFYSQ-FDLTCRSSVSVGVDYAYAMTTLTILCQFFVGIVALPKPSRWGP 196
            MIC+GFAVSL LN+GS TA +EG+F AEVKCL  GAS+TVL DLGVWVGWR+AVAN  E   F+LEE+SM GA MGI+TVVG+ATD L+NAVGLA LLY RRKP++E Q R++KR+CLASLAMAGWLMG TVIGFL+AVKGPIG+AA+AFYS+ FDL C +SVSV       M TLT+LCQFF+GIVALPKPSR  P
Sbjct:  204 MICIGFAVSLILNLGSFTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANSEEAVTFNLEEMSMVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWLMGMTVIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVXXXXXXXMATLTVLCQFFIGIVALPKPSRSSP 400
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig953.17272.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTM4_ECTSI1.360e-9974.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU38_9PHAE6.110e-9171.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 138..167
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 189..232
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..72
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 168..188
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 101..111
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 112..137
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 73..100
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.592
NoneNo IPR availableTMHMMTMhelixcoord: 116..138
NoneNo IPR availableTMHMMTMhelixcoord: 164..186
NoneNo IPR availableTMHMMTMhelixcoord: 73..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig953contigS-latissima_F_contig953:171591..178651 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig953.17272.1mRNA_S-latissima_F_contig953.17272.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig953 171591..178652 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig953.17272.1 ID=prot_S-latissima_F_contig953.17272.1|Name=mRNA_S-latissima_F_contig953.17272.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=232bp
MICVGFAVSLCLNVGSLTACQEGFFTAEVKCLSPGASETVLNDLGVWVGW
RRAVANGREEAVFDLEELSMTGAAMGIMTVVGHATDSLVNAVGLASLLYA
RRKPIEEVQSRLIKRICLASLAMAGWLMGTTVIGFLLAVKGPIGSAAIAF
YSQFDLTCRSSVSVGVDYAYAMTTLTILCQFFVGIVALPKPSRWGPPALF
RWRQSSAASERALTPSGETPRCRGRRRSSRPW
back to top