prot_S-latissima_F_contig953.17264.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig953.17264.1
Unique Nameprot_S-latissima_F_contig953.17264.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length207
Homology
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BLAST of mRNA_S-latissima_F_contig953.17264.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 4.060e-29
Identity = 77/209 (36.84%), Postives = 102/209 (48.80%), Query Frame = 0 
Query:   17 LLLDLAVQADACRCLTRSL--CQK----FEEADVVVRATALSRTGPVD--RRTTYILDPETIYKGVGLVKPGQEITFDTNASGASCGISLNLVGEHLVGLHHNGE-----------GSFSANTCGLSRGWEFVTDEDIRSLETGCEDEDPCYGLCGEFQECLKYDDNLADPYYCSDVCD-PSPCVDGLPCTLVFLGECERGRCPPEAHC 205
            LLL+ A  A AC CL + +  C+     F    VV R TALS++   D     T+ +    +Y G   V    EI+F T  + A CG+ L +  E+L+GL+  G+           G  +   C L+R W  V D++   LE GC +   C   CGEFQECL Y+D L   YYC+D CD P  C D   C L  +  C R  CPP A C
Sbjct:   18 LLLNQAFHASACTCLAQYITPCEYAQGIFTTTTVVFRGTALSKSAQTDINEDVTFTVQVNAVYSGD--VDGQDEISFVTGGNSAICGVDLTIGEEYLLGLYPAGDDPFDSTGGGTAGQLTVGLCDLARVWSDVPDDEKADLEAGCGE---CDVSCGEFQECLLYEDGLESEYYCADTCDDPDRCADNETCVLTEVA-CIRAPCPPVASC 220
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BLAST of mRNA_S-latissima_F_contig953.17264.1 vs. uniprot
Match: D7G2B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B7_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 4.450e-9
Identity = 33/59 (55.93%), Postives = 34/59 (57.63%), Query Frame = 0 
Query:  148 CYGLCGEFQECLKYDDNLA-DPYYCSDVCDPSPCVDGLPCTLVFLGECERGRCPPEAHC 205
            C G C EFQECL Y  N A D YYCS VCDPSPC DG  CTLV         C P + C
Sbjct:  273 CEGRCSEFQECLFYSGNFAEDQYYCSAVCDPSPCGDGEECTLV------PASCAPGSIC 325
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig953.17264.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCN7_ECTSI4.060e-2936.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2B7_ECTSI4.450e-955.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.120coord: 28..144
e-value: 4.4E-8
score: 35.3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..206
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..27
score: 0.798
IPR001820Protease inhibitor I35 (TIMP)PFAMPF00965TIMPcoord: 26..148
e-value: 7.7E-8
score: 32.4
IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldSUPERFAMILY50242TIMP-likecoord: 28..149

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig953contigS-latissima_F_contig953:6994..12683 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig953.17264.1mRNA_S-latissima_F_contig953.17264.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig953 6798..18272 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig953.17264.1 ID=prot_S-latissima_F_contig953.17264.1|Name=mRNA_S-latissima_F_contig953.17264.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=207bp
MVACFKFLTMAAFATVLLLDLAVQADACRCLTRSLCQKFEEADVVVRATA
LSRTGPVDRRTTYILDPETIYKGVGLVKPGQEITFDTNASGASCGISLNL
VGEHLVGLHHNGEGSFSANTCGLSRGWEFVTDEDIRSLETGCEDEDPCYG
LCGEFQECLKYDDNLADPYYCSDVCDPSPCVDGLPCTLVFLGECERGRCP
PEAHCY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001820TIMP
IPR008993TIMP-like_OB-fold