prot_S-latissima_F_contig924.17014.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig924.17014.1
Unique Nameprot_S-latissima_F_contig924.17014.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length202
Homology
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BLAST of mRNA_S-latissima_F_contig924.17014.1 vs. uniprot
Match: D7G7N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N7_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.020e-46
Identity = 85/115 (73.91%), Postives = 94/115 (81.74%), Query Frame = 0 
Query:   90 GVSAATEGSVAASN--VWAEERFPGCSTVVSPATRLSGLLAEVWETLADPSAVQEGKPRVLAFPDCAAVASPRGLQNLYEHLEVCQDACEQFGTAVSIAPHPKGGSSGAPAPALV 202
            G + A E SVAA     WAE +FPGCSTV+S ATRLSGLLA+VWETLADPSA +  +PRVL FPDC AVA  RGLQNLYEHLEVCQDACEQFGT VSI PHP+GG +GAPAP+LV
Sbjct:    3 GAATAEEDSVAAKEELAWAESQFPGCSTVLSKATRLSGLLADVWETLADPSAAEAERPRVLMFPDCPAVAEARGLQNLYEHLEVCQDACEQFGTMVSIVPHPRGGRTGAPAPSLV 117
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BLAST of mRNA_S-latissima_F_contig924.17014.1 vs. uniprot
Match: A0A6H5L2Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q2_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 7.440e-46
Identity = 85/113 (75.22%), Postives = 94/113 (83.19%), Query Frame = 0 
Query:   92 SAATEGSVAASN--VWAEERFPGCSTVVSPATRLSGLLAEVWETLADPSAVQEGKPRVLAFPDCAAVASPRGLQNLYEHLEVCQDACEQFGTAVSIAPHPKGGSSGAPAPALV 202
            + A E SVAA     WAE +FPGCSTV+S ATRLSGLLA+VWETLADPSAV+  +PRVL FPDC AVA  RGLQNLYEHLEVCQDACEQFGT VSI PHP+GG +GAPAP+LV
Sbjct:   67 ATAEEDSVAAKGELAWAESQFPGCSTVLSKATRLSGLLADVWETLADPSAVEAERPRVLMFPDCPAVAEARGLQNLYEHLEVCQDACEQFGTMVSIVPHPRGGKNGAPAPSLV 179
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BLAST of mRNA_S-latissima_F_contig924.17014.1 vs. uniprot
Match: A0A7S2WW48_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW48_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.600e-5
Identity = 34/108 (31.48%), Postives = 52/108 (48.15%), Query Frame = 0 
Query:   98 SVAASNVWAEERFPGCSTVVSPATRLSGLLAEVWETLADPSAVQEGKPRVLAFPDCAAVASPRGLQNLYEHLEVCQDACEQFGTAVSIAP----HPKGGSSGAPAPAL 201
            S A    W   R    +  VS A  L+ + A VW  ++D    Q+     + FP+C  +++   L  L +HLE+C+D CE FGT +   P     PK   + +PAP +
Sbjct:   50 SAAECESWFSGRGQAEALHVSDARTLATVFAHVWSKISDSKLDQQ----FIVFPECTELSADGTLVRLMDHLELCKDVCESFGTEIQAFPLDPRAPKDHPAHSPAPGV 153
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig924.17014.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7N7_ECTSI1.020e-4673.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2Q2_9PHAE7.440e-4675.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2WW48_9STRA4.600e-531.48Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..202
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.568

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig924contigS-latissima_F_contig924:144420..148512 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig924.17014.1mRNA_S-latissima_F_contig924.17014.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig924 144377..148512 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig924.17014.1 ID=prot_S-latissima_F_contig924.17014.1|Name=mRNA_S-latissima_F_contig924.17014.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=202bp
MSSTLWTIALLTASISPSYHGFVATPPPTSSTSRRSAQNFRQGGAKCTPP
HVAPNVAAATRQRLPGHTSSLQQNTGRKPFKQYSVGEDVGVSAATEGSVA
ASNVWAEERFPGCSTVVSPATRLSGLLAEVWETLADPSAVQEGKPRVLAF
PDCAAVASPRGLQNLYEHLEVCQDACEQFGTAVSIAPHPKGGSSGAPAPA
LV
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