prot_S-latissima_F_contig1053.463.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig1053.463.1
Unique Nameprot_S-latissima_F_contig1053.463.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length249
Homology
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BLAST of mRNA_S-latissima_F_contig1053.463.1 vs. uniprot
Match: A0A6H5KEL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEL6_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 2.030e-103
Identity = 165/250 (66.00%), Postives = 206/250 (82.40%), Query Frame = 0 
Query:    1 MEISLALVFGVQVLVCARWGPKVTFQTVLVKSIMAEDGVTEEQAPGFKGAFLNGLERIAPDIEEATGLIVAAKRALKFQERSADATVPVKVTYLPMLNDCHEPQSVVAPLVRASLALHNEGALLPFLAGDLTPVDLMYRLSGLALRDVKEGFAGLGPISDERDRVTLVRLYLVGLSYAMGVMPKGEAAVGKPKWQVLRDYAHAQRKIADMEKVIEDLQHRRPEPKAEARDNAPAATVQT--SGGCKCTVM 248
            ME+SLALVFGV+VLVC RWGPKVTFQ+VL +++++EDG + EQ PGFKGAFL+G+ RIAPD+EE  G +V  KRAL   ER+AD TVPV+V Y PML  CHEPQ+VV+PLVRASLALHNEGALLPFLAGD++PVD+MYRLSGLAL+DVK+GF GLGPISDE DRVTLVRLYL+GLSYAMG++PKG+ AVGKPK+Q+++DY  AQ+++ D+E+ +E L++R     A+  +   AAT+    S GC C VM
Sbjct:  865 MEVSLALVFGVEVLVCVRWGPKVTFQSVLARTLVSEDGESVEQGPGFKGAFLHGIARIAPDVEEVKGFVVGVKRALIGPERTADPTVPVRVVYEPMLEHCHEPQTVVSPLVRASLALHNEGALLPFLAGDVSPVDIMYRLSGLALQDVKDGFGGLGPISDENDRVTLVRLYLLGLSYAMGIVPKGKEAVGKPKFQIIKDYEEAQKRVGDLEREMEGLKNR---VTAQPEEAPRAATLPPPPSAGCGCVVM 1111
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BLAST of mRNA_S-latissima_F_contig1053.463.1 vs. uniprot
Match: D7G1T1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T1_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 4.300e-89
Identity = 154/237 (64.98%), Postives = 187/237 (78.90%), Query Frame = 0 
Query:    1 MEISLALVFGVQVLVCARWGPKVTFQTVLVKSIMAEDGVTEEQAPGFKGAFLNGLERIAPDIEEATGLIVAAKRALKFQERSADATVPVKVTYLPMLNDCHEPQSVVAPLVRASLALHNEGALLPFLAGDLTPVDLMYRLSGLALRDVKEGFAGLGPISDERDRVTLVRLYLVGLSYAMGVMPKGEAAVGKPKWQVLRDYAHAQRKIADMEKVIEDLQHRRPEPKAEARDNAPAATV 237
            ME+SLALVFGV+VLVC RWGPKVTFQ+VL +++++EDG T EQ PGF+GAFL+G+ RIAPD+EE  G +V  KRAL   ER+AD TVPV+V Y PML  CHEPQ+VV+PLVRASLALHNEGALLPFLAGD++PVD+MYRLSGLAL+DVK+GF GLGPISDE DRVTLVRLYL+GLSYAMG++PKG+ AVG      LR  A A +   + +  +E+ + R  E +  A    PAAT 
Sbjct:  830 MEVSLALVFGVEVLVCVRWGPKVTFQSVLARTLVSEDGETVEQGPGFRGAFLHGIARIAPDVEEVKGFVVGMKRALIGPERTADPTVPVRVVYEPMLEHCHEPQTVVSPLVRASLALHNEGALLPFLAGDVSPVDIMYRLSGLALQDVKDGFGGLGPISDENDRVTLVRLYLLGLSYAMGIVPKGKEAVG------LRRGAKAGQCFRERDGGLEEPRDR--EARRHAEGGHPAATA 1058
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1053.463.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KEL6_9PHAE2.030e-10366.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1T1_ECTSI4.300e-8964.98Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 200..220
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..248
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.508

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1053contigS-latissima_F_contig1053:159935..166627 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1053.463.1mRNA_S-latissima_F_contig1053.463.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig1053 159695..166638 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig1053.463.1 ID=prot_S-latissima_F_contig1053.463.1|Name=mRNA_S-latissima_F_contig1053.463.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=249bp
MEISLALVFGVQVLVCARWGPKVTFQTVLVKSIMAEDGVTEEQAPGFKGA
FLNGLERIAPDIEEATGLIVAAKRALKFQERSADATVPVKVTYLPMLNDC
HEPQSVVAPLVRASLALHNEGALLPFLAGDLTPVDLMYRLSGLALRDVKE
GFAGLGPISDERDRVTLVRLYLVGLSYAMGVMPKGEAAVGKPKWQVLRDY
AHAQRKIADMEKVIEDLQHRRPEPKAEARDNAPAATVQTSGGCKCTVM*
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