prot_S-latissima_F_contig1053.457.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig1053.457.1
Unique Nameprot_S-latissima_F_contig1053.457.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length153
Homology
BLAST of mRNA_S-latissima_F_contig1053.457.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.510e-27
Identity = 71/151 (47.02%), Postives = 89/151 (58.94%), Query Frame = 0
Query:    1 MTLKSD-SAVVFTNFALKVLGGLTVEPDVTFQNVTEQETNGGALYVDKDSSATFLGTSRFLSNTVTNSQANL-------DR--------FRNGGAVFNKGNLVFEGDATFLLNKALTQDSTDVGRGGAIYNARIGTITFNAGLTADENRGE 135
            MTLK+  +AV F NF+LKVLG LTVEPDVTF  V +Q  NGG L V + +++TF+GTS F  N+V   Q          +R         + GGA+ NKG L FEGDATF  N   T+DS + G+ GAI N   GTI F + LT  +N  E
Sbjct:   62 MTLKATVAAVEFGNFSLKVLGELTVEPDVTFNGVVDQVKNGGVLSVAEGATSTFMGTSEFSDNSVAVKQLGAVSCGDGCERTGRGLSYVVKKGGAIHNKGTLTFEGDATFERNAVHTEDSVEQGKAGAISNTGSGTIWFKSKLTMKDNEAE 212          
BLAST of mRNA_S-latissima_F_contig1053.457.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 5.730e-27
Identity = 70/151 (46.36%), Postives = 88/151 (58.28%), Query Frame = 0
Query:    1 MTLKSD-SAVVFTNFALKVLGGLTVEPDVTFQNVTEQETNGGALYVDKDSSATFLGTSRFLSNTVTNSQ----------ANLDR-----FRNGGAVFNKGNLVFEGDATFLLNKALTQDSTDVGRGGAIYNARIGTITFNAGLTADENRGE 135
            MTLK+   AV F NF+LKVLG LTVEPDV F  V +Q  NGG L V + ++ATF+GTS F  N+V   Q            + R      + GGA+ NKG L FEGDATF  N+  T+DS + G+ GAI N   GTI F + LT  +N  +
Sbjct:   62 MTLKATVPAVEFGNFSLKVLGELTVEPDVMFNGVVDQVKNGGVLSVAEGATATFMGTSEFSDNSVAVKQIGPVSCGDGCTRIGRGLSYIVKKGGAIHNKGTLTFEGDATFERNEVHTEDSVEQGKAGAISNTGSGTILFKSKLTMKDNEAD 212          
BLAST of mRNA_S-latissima_F_contig1053.457.1 vs. uniprot
Match: A0A6H5KTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD4_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.860e-16
Identity = 61/146 (41.78%), Postives = 77/146 (52.74%), Query Frame = 0
Query:    1 MTLKSD-SAVVFTNFALKVLGGLTVEPDVTFQNVTEQETNGGALYVDKDSSATFLGTSRFLSNTVTNSQANLDR----FRNGGAVFNKGNLVFEGDATFL--LNKALTQDSTDVGRGGAIYNARIGTITFNAGLTADENRGEVRIG 139
            M LKS    V F+NFALKV G LTVEPDV F  V+  E NGG L ++  +   F GT+ F  N++ ++  +        R GGA+  KG+L FE DATF   LN  L   S   G GGAI     G+I F   LT  +N  +   G
Sbjct:   64 MVLKSSVGKVTFSNFALKVYGSLTVEPDVVFTGVSLVEKNGGVLKLELGAVGVFKGTAEFSDNSIISTSIDESTEEEILRKGGAIHTKGSLTFEKDATFSGNLNDRLYYGS---GPGGAISVHVKGSIYFMGKLTMTDNEADDYFG 206          
BLAST of mRNA_S-latissima_F_contig1053.457.1 vs. uniprot
Match: D7FQG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG2_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 3.190e-5
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 0
Query:    1 MTLKSD-SAVVFTNFALKVLGGLTVEPDVTFQNVTEQETNG 40
            MTLK+  SAV F NF+LKVLG LTVEPDVTF  V +Q + G
Sbjct:   62 MTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVDQSSEG 102          
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1053.457.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJ44_ECTSI1.510e-2747.02Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FLJ6_ECTSI5.730e-2746.36Asn/thr-rich large protein family protein n=1 Tax=... [more]
A0A6H5KTD4_9PHAE1.860e-1641.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQG2_ECTSI3.190e-565.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 92..115
e-value: 0.12
score: 12.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1053contigS-latissima_F_contig1053:6912..15605 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1053.457.1mRNA_S-latissima_F_contig1053.457.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig1053 6881..15684 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig1053.457.1 ID=prot_S-latissima_F_contig1053.457.1|Name=mRNA_S-latissima_F_contig1053.457.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=153bp
MTLKSDSAVVFTNFALKVLGGLTVEPDVTFQNVTEQETNGGALYVDKDSS
ATFLGTSRFLSNTVTNSQANLDRFRNGGAVFNKGNLVFEGDATFLLNKAL
TQDSTDVGRGGAIYNARIGTITFNAGLTADENRGEVRIGDGRRHLHQRRY
RR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat