prot_S-latissima_F_contig105.429.1 (polypeptide) Saccharina latissima SLPER63f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-latissima_F_contig105.429.1
Unique Nameprot_S-latissima_F_contig105.429.1
Typepolypeptide
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Sequence length220
Homology
BLAST of mRNA_S-latissima_F_contig105.429.1 vs. uniprot
Match: D8LSZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSZ0_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 9.980e-85
Identity = 138/217 (63.59%), Postives = 171/217 (78.80%), Query Frame = 0
Query:    4 TKTIPEMRDIICNEMKEIYDRSEGEDEIREVLQLDRSMESECDGRDKDARVIIRGMTDRLEQQRREIETPSEEAFVSEVRRLEKERARASDHINQQLEEAAAQEKDIERMQLATEETNVEIERTVEAHTVDLPRVQNAIGLYTNITNIKWNYETEGDIVAGWLVPSGGGGXXXXXKAGHG-AVVEGFQFDATGKSDFEVANKLWDVIDGKTRALVEA 219
            T+T+ EMRDI+ N+M +IYDR+ G D++REVL+L+ +ME EC+ R+ DAR +IR   D LEQ+ R I  PSE+AFV+ +R +E ERA+A+ HI +Q EEAAA+E+DIERMQ   E+T  EIE TV+AHT+++PRVQNAIGLYTNIT IKWNYETEG+I+AGWLVP   G      K  +G AVVEGFQFDA GK DFEVANKLWDVIDGK RA+VEA
Sbjct:    6 TRTLEEMRDIVNNDMPQIYDRTAGVDDVREVLELEAAMEMECERREMDARAMIRDTIDVLEQRHRAIVEPSEQAFVARIRVVEHERAQAASHIQEQAEEAAARERDIERMQGEVEDTQTEIENTVDAHTMEMPRVQNAIGLYTNITRIKWNYETEGEIMAGWLVPPEAG---VGMKGANGTAVVEGFQFDAAGKDDFEVANKLWDVIDGKARAMVEA 219          
BLAST of mRNA_S-latissima_F_contig105.429.1 vs. uniprot
Match: A0A7S1YQV0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YQV0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.900e-7
Identity = 40/128 (31.25%), Postives = 71/128 (55.47%), Query Frame = 0
Query:   93 SDHINQQLEEAAAQEKDIERMQLATEETNVEIERT--VEAHTV-DLPRVQNAIGLYTNITNIKWNYETEGDIVAGWLVPSGGGGXXXXXKAGHGAVVEGFQFDATGKSDFEVANKLWDVIDGKTRALV 217
            +D ++QQ +E+       +R +    E +VE+E+   VEA  + ++PR++  + LY  +TNIKW+YE E +++AG +     G            +   F+ D    S+F+VAN +W ++DGK+ A+V
Sbjct:  154 NDEVDQQKKESE------QRTERYRAEASVEVEKIDEVEAAKIKEVPRMKKQLSLYAAMTNIKWHYEKE-NVMAGEVAVLSQG------------ICRRFEIDPMEHSEFDVANAVWSLMDGKSSAVV 262          
BLAST of mRNA_S-latissima_F_contig105.429.1 vs. uniprot
Match: C1N8R2_MICPC (Kinetochore protein Spc24 n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N8R2_MICPC)

HSP 1 Score: 53.5 bits (127), Expect = 3.240e-5
Identity = 44/198 (22.22%), Postives = 90/198 (45.45%), Query Frame = 0
Query:   14 ICNEMKEIYDRSEGEDEIREVLQLDRSMESECDGRDKDARVIIRGMTDRL-EQQRREIETPSEEAFVSEVRRLEKERARASDHINQQLEEAAAQEKDIERMQLATEETNVEIERTVEAHTVDLPRVQNAIGLYTNITNIKWNYETEGDIVAGWLVPSGGGGXXXXXKAGHGAVVEGFQFDATGKSDFEVANKLWDVID 210
            +  EM+ IY   E   + R++ +    +   C+ R+   + +I+ M  ++ E ++    T SEE     + + E E+  A +++     EA A E     ++    +  ++ +   +     +PR+++ + LY +I+ I W Y+   D + G +  +G               V+ F F     ++FE+ NK+WD+ID
Sbjct:   20 LIEEMRRIYATDEDTMKARQLNEQFAEVRELCERREVHMQDVIKEMVQKVKEAEKAATPTESEEEHKKRLAQAESEKRAAEEYLTHMEHEAMALENSQAELKAEAAKLKMKKQELTDMEDEGVPRLKHELSLYAHISKISWAYDRP-DRIKGRVNGAG--------------EVKPFDFAPDEMTEFELVNKMWDLID 202          
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig105.429.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSZ0_ECTSI9.980e-8563.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1YQV0_9STRA9.900e-731.25Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
C1N8R2_MICPC3.240e-522.22Kinetochore protein Spc24 n=1 Tax=Micromonas pusil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Saccharina latissima female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 82..116
IPR013252Kinetochore-Ndc80 subunit Spc24PANTHERPTHR22142UNCHARACTERIZEDcoord: 14..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig105contigS-latissima_F_contig105:47826..61253 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Saccharina latissima female2022-09-29
Diamond blastp: OGS1.0 of Saccharina latissima female vs UniRef902022-09-16
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig105.429.1mRNA_S-latissima_F_contig105.429.1Saccharina latissima SLPER63f femalemRNAS-latissima_F_contig105 47826..61417 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-latissima_F_contig105.429.1 ID=prot_S-latissima_F_contig105.429.1|Name=mRNA_S-latissima_F_contig105.429.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=220bp
MGTTKTIPEMRDIICNEMKEIYDRSEGEDEIREVLQLDRSMESECDGRDK
DARVIIRGMTDRLEQQRREIETPSEEAFVSEVRRLEKERARASDHINQQL
EEAAAQEKDIERMQLATEETNVEIERTVEAHTVDLPRVQNAIGLYTNITN
IKWNYETEGDIVAGWLVPSGGGGGSGGGKAGHGAVVEGFQFDATGKSDFE
VANKLWDVIDGKTRALVEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013252Ndc80_Spc24