mRNA_S-latissima_F_contig989.17592.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig989.17592.1
Unique NamemRNA_S-latissima_F_contig989.17592.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig989.17592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig989contigS-latissima_F_contig989:75744..76492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size163
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817387.5803854-CDS-S-latissima_F_contig989:75743..758431622817387.5803854-CDS-S-latissima_F_contig989:75743..75843Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig989 75744..75843 +
1693926527.658971-CDS-S-latissima_F_contig989:75743..758431693926527.658971-CDS-S-latissima_F_contig989:75743..75843Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig989 75744..75843 +
1622817387.591486-CDS-S-latissima_F_contig989:76430..764921622817387.591486-CDS-S-latissima_F_contig989:76430..76492Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig989 76431..76492 +
1693926527.670801-CDS-S-latissima_F_contig989:76430..764921693926527.670801-CDS-S-latissima_F_contig989:76430..76492Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig989 76431..76492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig989.17592.1prot_S-latissima_F_contig989.17592.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig989 75744..76492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig989.17592.1

>prot_S-latissima_F_contig989.17592.1 ID=prot_S-latissima_F_contig989.17592.1|Name=mRNA_S-latissima_F_contig989.17592.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=54bp
FLLACFSLVRCPVLLYSIRNSKYGSGWISHSTEGWISYSTEGALYTNFKI
TTP*
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mRNA from alignment at S-latissima_F_contig989:75744..76492+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig989.17592.1 ID=mRNA_S-latissima_F_contig989.17592.1|Name=mRNA_S-latissima_F_contig989.17592.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=749bp|location=Sequence derived from alignment at S-latissima_F_contig989:75744..76492+ (Saccharina latissima SLPER63f female)
TTCTTATTAGCCTGTTTCTCATTAGTTAGGTGTCCTGTACTGCTGTACAG
CATAAGAAACAGTAAATATGGTTCAGGCTGGATTTCTCATTCGACAGAGG
GTGCTCTCTACACTAATTTCAAGATAACGACTCCATAATTTCTTGTTTTC
CTCTAATCTCAGCCTGGATTTCTTATTAGCCTGTTTCTTACTAGTTAGGT
GTCCTGTACTGCTGTACAGCAACCTGCTGTACAGCAGCAACAACAACAAC
ACACAGCAGTAGTATATAGTAGTACCTTGAAAGAAACTGACTCGAACAAC
CCCGAGACCGAAGCACAAATCACAGCAGTACGTACGTAGTAGAGGAATAT
ACGCTGCAATGGCAAGCCTAATCAGTAGTACTACGACAGCAGTACAGGTA
CTCGCGAGTACTTAGTCATTTCAGCTCCTACTACAAGTACTGCTGTCTAA
GTACTCCAGCGACTCCCCTAAAATACGTCACTGGGACCGGGTTTGTATTG
GAACTCCCATCTAACGGTACTGCAGCACGTGTCACGTGTGGTCGTATGCC
CGAGTACTTTCAAGATAACGACTCCATAATTTCTTATTTTCCTCTAAATC
TCAGCCTGGATTTCTTATTAGCCATTTTCTTATTAGTTAGGTGTCCTGTA
CTGCTGTACAGCATGAGAAACAGTAAGTATGGTTCAGGCTGGATTTCTTA
TTCGACAGAGGGTGCTCTCTACACTAATTTCAAGATAACGACTCCATAA
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Coding sequence (CDS) from alignment at S-latissima_F_contig989:75744..76492+

>mRNA_S-latissima_F_contig989.17592.1 ID=mRNA_S-latissima_F_contig989.17592.1|Name=mRNA_S-latissima_F_contig989.17592.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=324bp|location=Sequence derived from alignment at S-latissima_F_contig989:75744..76492+ (Saccharina latissima SLPER63f female)
TTCTTATTAGCCTGTTTCTCATTAGTTAGGTGTCCTGTACTGCTGTACAG
CATAAGAAACAGTAAATATGGTTCAGGCTGGATTTCTCATTCGACAGAGG
TTCTTATTAGCCTGTTTCTCATTAGTTAGGTGTCCTGTACTGCTGTACAG
CATAAGAAACAGTAAATATGGTTCAGGCTGGATTTCTCATTCGACAGAGG
GCTGGATTTCTTATTCGACAGAGGGTGCTCTCTACACTAATTTCAAGATA
ACGACTCCATAAGCTGGATTTCTTATTCGACAGAGGGTGCTCTCTACACT
AATTTCAAGATAACGACTCCATAA
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