mRNA_S-latissima_F_contig983.17548.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig983.17548.1 vs. uniprot
Match: A0A6H5JY66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY66_9PHAE) HSP 1 Score: 706 bits (1823), Expect = 1.960e-241 Identity = 430/734 (58.58%), Postives = 499/734 (67.98%), Query Frame = 1
Query: 49 RQLGACSAGFWSLAPAGGGYPQLRVSDCAQHPADIKVSTWTQVTCADCSEQTYNGDMPEVECFTPPA-SSPSPSPPSXXDXPTSGAAXXXXXXXXXXXXXXXXXXGAPVDARHLPTDFCLTACAPPTGSCKVLDVGGRYPGLYTVIGSYNGRGDYYSENQEHNIFFELDSDSXXXXXXXXXXXXXXXXXRRVL------------LDGEREGGDG-GRELAACDSGYWIKTPTGGGYPFFALADCAVFPENIAPTASWLIITCAGCDAGPATAAQAIACATGEDAFVATPAPVPPVQNAGGGVGVLPGAGTTTCEEVTVTGVRGGGYTVTGETNDRADLLSDDGDFRMFFTGPAPALETYGERMRRLVSGEDYRDVPFDQFASEVARS---RGLQEICGGFWYIIPSGDKYPAYAVSDCAVHPVDIVNTNWLYLDCEDCAVVTASPKPAAACTGAPANIKRGGSWVTPSPAGVIEPGGGTPSP----VASASSTCETLVVTGDYPGNFTANGTYRGKLDFFNNDHTVNLYFELA-TSRRALMAGEQDGAGQRRSFPGDAMASALAG---AAVTSRSLAVCTSGFWIMAPVGGIGYPVFGVPDCAQHPADIRANTWLVASCETCGVQEAPSFVAPTILCAGQEAANTGVEAPTPTPAPAAESNCGVVYVTGPAAGVYKERGTQGNRGDFFSNNRVWNLYWAFYAGKPVNRNRFRRGLSAPDGVYGQGGGERRSKE 2175
R+LGAC++GFWSLAPAG GYP+L V DCA HPADIKV+ W++VTC C EQ +NG +P V C + + ++PSPS + + XXXXXXXXXXXXXXXXXXG V A+ P+ SCKV+DV GRYPGLYTV GSYN RGD+YS + HNIF XXXXXXXXXXXXXXXXX L GER GR LAAC +GYWIK PTGGGYP FA+ADCA +PE IA +++W+I+TC GC AT++Q I CATG DAFVATP+PV PV GG LPGAG +TCE VTVTG R GGYTV G N AD+ SDDG +RMFF PAPAL R + + A + + RGLQ C G+WYI P D+YPAYAV DC HPVDIV+++WLYLDCEDC VVTA KP A+CTGAPANIKRGGS+ TP+P V+ GTP P SAS+TC L VTG++PGN+TANGTYRGKLDFFN+D TVNLYFELA +SRR L + ++ G RR PG+ MASAL A SR LA+CTSG+WI+ V G GYPV GVPDCA HP DIRANTWLVASCE+CGVQEAPSFVAPTI CA A A TP+PA + CG VYVTGPAAGVY ++G G RGDFFS N WN+YW FYAGKPVNRNRFRRGLS P+ + G ER S+E
Sbjct: 102 RRLGACTSGFWSLAPAGSGYPRLTVGDCASHPADIKVTAWSEVTCEGCEEQAFNGAVPAVACTSDNSLATPSPS---------AASTXXXXXXXXXXXXXXXXXXGGEVGAQQTPSPVASAPEIVVDDSCKVIDVVGRYPGLYTVAGSYNERGDFYSADGGHNIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLRGLFGERSAQQATGRNLAACSNGYWIKMPTGGGYPLFAVADCAAYPEEIASSSTWMIVTCEGCVGTEATSSQTITCATGADAFVATPSPVSPVVAGGGETITLPGAGPSTCEAVTVTGPRAGGYTVGGSINGAADVYSDDGLWRMFFASPAPALSRRARRSLHFSADGGDAGPLSAELAPDTRDTHDRRGLQT-CDGYWYITPVDDRYPAYAVMDCGEHPVDIVSSDWLYLDCEDCEVVTADSKPDASCTGAPANIKRGGSFNTPAP--VVLDFVGTPGPDTSSSGSASTTCTELYVTGEFPGNYTANGTYRGKLDFFNDDGTVNLYFELADSSRRLLSSAGEEREGGRRLLPGELMASALEERYHALAASRRLAICTSGYWIITQVAGDGYPVLGVPDCADHPVDIRANTWLVASCESCGVQEAPSFVAPTIACASGAAGXXXXGA---TPSPALPAICGTVYVTGPAAGVYVQQGDYGTRGDFFSGNNAWNMYWTFYAGKPVNRNRFRRGLSVPED---RAGSERWSEE 817
BLAST of mRNA_S-latissima_F_contig983.17548.1 vs. uniprot
Match: D7G5Q9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q9_ECTSI) HSP 1 Score: 623 bits (1607), Expect = 1.980e-212 Identity = 386/640 (60.31%), Postives = 445/640 (69.53%), Query Frame = 1
Query: 49 RQLGACSAGFWSLAPAGGGYPQLRVSDCAQHPADIKVSTWTQVTCADCSEQTYNGDMPEVECFTPPASSPSPSPPSXXDXPTSGAAXXXXXXXXXXXXXXXXXXGAPVDARHLPTDFCLTACAPPTGSCKVLDVGGRYPGLYTVIGSYNGRGDYYSENQEHNIFFELDSDSXXXXXXXXXXXXXXXXX----------RRVL--LDGEREGGDG-GRELAACDSGYWIKTPTGGGYPFFALADCAVFPENIAPTASWLIITCAGCDAGPATAAQAIACATGEDAFVATPAPVPPVQNAGGGVGVLPGAGTTTCEEVTVTGVRGGGYTVTGETNDRADLLSDDGDFRMFFTGPAPALETYGERMRRLV--SGEDYRDVPFDQFASEVARS----RGLQEICGGFWYIIPSGDKYPAYAVSDCAVHPVDIVNTNWLYLDCEDCAVVTASPKPAAACTGAPANIKRGGSWVTPSPAG---VIEPGGGTPSPVASASSTCETLVVTGDYPGNFTANGTYRGKLDFFNNDHTVNLYFELA-TSRRALMAGEQDGAGQRRSFPGDAMASALAG---AAVTSRSLAVCTSGFWIMAPVGGIGYPVFGVPDCAQHPADIRANTWLVASCETCGVQEAPSFVAPTILCA 1890
R+LGAC++GFWSLAPAG GYP+L V DCA HPADIKV+ W +VTC C EQ +NG +P V C AS SP+ PS P++ XXXXXXXXXXXXXXXXXXG V A+ P+ SCKV+DVGGRYPGLYTV GSYN RGD+YS + HNIFFE S XXXXXXXX XXXXXXXX RRVL L GER G GR LAAC +GYWIK PTGGGYPFFA+ADCA +PE IA +++W+I+TC GC AT+AQAI CATG DAFVATP+PV PV G LPGAG +TCE +TVTG R GGYTV G N AD SDDG +RMFF PA AL R RR + S E VP + R RGLQ C G+WYI P D+YPAYAV DC HPVDIV+++WLYLDCEDC VVTA KP A+CTGAPAN+KRGGS+ TP+P V PG G+ S S+S+TC L VTGD+PGN+TANGTYRG+LDFF++D T NLYFELA +SRR L + +++ G+RR PG+ MASAL A SR LA+CTSG+WI+ V G GYPV G PDCA HP DIR NTWLVASCE+CGVQEAPSFVAPTI CA
Sbjct: 35 RRLGACTSGFWSLAPAGSGYPRLTVGDCASHPADIKVTAWLEVTCEGCEEQAFNGAVPAVAC----ASDDSPATPS----PSAXXXXXXXXXXXXXXXXXXXXXGGEVGAQQTPSPVASAPEIIVDDSCKVVDVGGRYPGLYTVAGSYNERGDFYSADGGHNIFFEASSAXXXXXXXXXFXXXXXXXXXXXXXXGDRRRRVLRGLFGERSGQQATGRNLAACSNGYWIKMPTGGGYPFFAVADCAAYPEEIASSSAWMIVTCEGCVGTEATSAQAITCATGTDAFVATPSPVSPVVAGGEETVTLPGAGPSTCEAITVTGPRAGGYTVEGSINGAADAYSDDGLWRMFFAPPASALS---RRARRSLYFSAEGGDAVPLSTELAPDTRDTHDRRGLQT-CDGYWYITPVDDRYPAYAVMDCGEHPVDIVSSDWLYLDCEDCEVVTADSKPDASCTGAPANLKRGGSFNTPAPVALDFVGTPGPGSSSS-GSSSTTCTELYVTGDFPGNYTANGTYRGRLDFFSDDGTFNLYFELADSSRRLLSSADEEREGERRLLPGEVMASALEERYHAWAASRRLAICTSGYWIITQVAGDGYPVLGAPDCADHPVDIRTNTWLVASCESCGVQEAPSFVAPTITCA 661 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig983.17548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig983.17548.1 >prot_S-latissima_F_contig983.17548.1 ID=prot_S-latissima_F_contig983.17548.1|Name=mRNA_S-latissima_F_contig983.17548.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=733bp EGQEEAWEGGERGAFGRQLGACSAGFWSLAPAGGGYPQLRVSDCAQHPADback to top mRNA from alignment at S-latissima_F_contig983:86853..107400- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig983.17548.1 ID=mRNA_S-latissima_F_contig983.17548.1|Name=mRNA_S-latissima_F_contig983.17548.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=20548bp|location=Sequence derived from alignment at S-latissima_F_contig983:86853..107400- (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig983:86853..107400- >mRNA_S-latissima_F_contig983.17548.1 ID=mRNA_S-latissima_F_contig983.17548.1|Name=mRNA_S-latissima_F_contig983.17548.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=4398bp|location=Sequence derived from alignment at S-latissima_F_contig983:86853..107400- (Saccharina latissima SLPER63f female)back to top |