mRNA_S-latissima_F_contig97.17461.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig97.17461.1
Unique NamemRNA_S-latissima_F_contig97.17461.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig97.17461.1 vs. uniprot
Match: A0A6H5JDK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDK4_9PHAE)

HSP 1 Score: 334 bits (856), Expect = 3.710e-112
Identity = 155/247 (62.75%), Postives = 195/247 (78.95%), Query Frame = 1 
Query:    1 QFALCNVGSACREDFREANGSAAHMWPDEEMTVRTARIRTEKNRLKLNQFQPPLVPRYTEVGYKKEKLNPDTYAYLMEWYNKASGSR--VSEKWPADNSYVNHWKVDTIMVNAPARVRNRLYADLNQVMEDWAGTKLRRTSCYGVRLYFRDSVLANHVDRVDTHVISAIINVAQENVDTPWPLYVRGHDGIAKSITMEPGEIILYESASVIHGRPEVFKGDLFANIFVHYAPVDGWTITDADVQRAA 735
            +FA+CNVGS+CR ++  ANG+   MW  EE+ +   RI +E++R+ LN++QP  VP++TE+GYKKEKLNPDTYAYLMEWY+    ++  V+EKW  DN+YVNHW+VDT M  AP R+  RLY DL  VME+W+G KL+ T+CYGVR Y+R S+LANHVDRVDTHVISAIIN   ENVDT W LYVRGHDG+A+ + +EPGEII YESASVIHGRP+ F+G  FANIFVH++P +GW +T  DVQRAA
Sbjct:   40 EFAVCNVGSSCRGEYNRANGTLNKMW-QEEIGIVWKRINSERSRVMLNEYQPVTVPKFTELGYKKEKLNPDTYAYLMEWYHSQMENKAPVTEKWAPDNTYVNHWEVDTKMTAAPTRIHRRLYQDLLPVMEEWSGIKLKSTACYGVRHYYRGSILANHVDRVDTHVISAIIN---ENVDTDWGLYVRGHDGVARDLFIEPGEIIFYESASVIHGRPQAFQGSRFANIFVHFSPAEGWDVTTKDVQRAA 282
[Close]
BLAST of mRNA_S-latissima_F_contig97.17461.1 vs. uniprot
Match: D7FHL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL7_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 2.770e-97
Identity = 144/258 (55.81%), Postives = 182/258 (70.54%), Query Frame = 1 
Query:    1 QFALCNVGSACREDFREANGSAAHMWPDEEMTVRTARIRTEKNRLKLNQFQPPLVPRYTEVGYKKEKLNPDTYAYLMEWYNKASGSR--VSEKWPADNSYVNHWKVDTIMVNAPARVRNRLYADLNQVMEDWAGTKLRRTSCYGVRLYFRDSVLANHVDRVDTHVISAIINVAQENVDTPWPLYVRGHDGIAKSITMEPGEIILYESASVIHGRPEVFKGDLFANIFVHYAPVDGWTITDADVQRAALEASRKKRSEQ 768
            +FA+CNVGS+CR+++  ANG+   MWP EE  +   RI  E+NR+KLN++QP  VP++TE+GYKKEKLNPDTYAYLMEWY+    ++  V+EKW  DN+YVNHW+V T M  AP R+  RLY DL  VME+W+GTKL+ T+CYGVR Y+R S+LANHVDRVDTHVISAIINV Q                        PGEII YESASVIHGRP+ F+G  FANIFVH++P +GW +T   V+RAA     +KR ++
Sbjct:   40 EFAVCNVGSSCRDEYNRANGTLNKMWP-EETGIAPKRINGERNRVKLNEYQPVTVPKFTELGYKKEKLNPDTYAYLMEWYHGQMENKMPVTEKWALDNTYVNHWEVGTKMTTAPMRIHRRLYQDLLPVMEEWSGTKLKSTACYGVRHYYRGSILANHVDRVDTHVISAIINVEQ------------------------PGEIIFYESASVIHGRPQAFQGSRFANIFVHFSPAEGWDVTANTVERAAKFGKTQKRQQE 272
[Close]
BLAST of mRNA_S-latissima_F_contig97.17461.1 vs. uniprot
Match: A0A7S4UF91_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4UF91_9EUKA)

HSP 1 Score: 176 bits (446), Expect = 1.520e-49
Identity = 86/203 (42.36%), Postives = 126/203 (62.07%), Query Frame = 1 
Query:  106 ARIRTEKNRLKLNQFQPPLVPRYTEVGYKKEKLNPDTYAYLMEWYNKASGSRVSEKWPADNSYVNHWKVDTIMVNAPARVRNRLYADLNQVMEDW--AGTKLRRTSCYGVRLYFRDSVLANHVDRVDTHVISAIINVAQENVDTPWPLYVRGHDGIAKSITMEPGEIILYESASVIHGRPEVFKGDLFANIFVHYAPVDGWTI 708
            AR R EK R  LN+ QP + P +T++GY+  +L+P  ++ L  ++ +       E     N ++NHW+V T +++ PA++RN++ A +  V+EDW   G  L  TS YG+R+Y  +S L NHVDR  TH +SAII + Q  V+  W L V GHD   + + + PG++ LYESASVIHGR +   GD F+N+FVHY P D W +
Sbjct:  160 ARAREEKRRQYLNKEQPKITPTFTKIGYEVRQLDPQLFSELKTFWEENRHKIQVEHLGMTNHHMNHWEVPTYIISLPAQLRNKVIATVKPVLEDWIGGGYNLEYTSLYGIRMYVNNSYLLNHVDRSATHAVSAIIQIDQR-VNEDWLLEVIGHDKKVRHVKLLPGQMALYESASVIHGREKRLNGDYFSNLFVHYRPRDNWNV 361
[Close]
BLAST of mRNA_S-latissima_F_contig97.17461.1 vs. uniprot
Match: A0A7S2THP0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2THP0_9EUKA)

HSP 1 Score: 174 bits (442), Expect = 6.590e-49
Identity = 85/240 (35.42%), Postives = 138/240 (57.50%), Query Frame = 1 
Query:    1 QFALCNVGSACREDFREANGSAAHMWPDEEMTVRTARIRT-----EKNRLKLNQFQPPLVPRYTEVGYKKEKLNPDTYAYLMEWYNKASGSRVSEKWPADNSYVNHWKVDTIMVNAPA-----RVRNRLYADLNQVMEDWAGTKLRRTSCYGVRLYFRDSVLANHVDRVDTHVISAIINVAQENVDTPWPLYVRGHDGIAKSITMEPGEIILYESASVIHGRPEVFKGDLFANIFVHYAP 690
            QF++   G  C E + E            +  +R A+++       ++R + N+ QP  +  +TE+G++K K+  D +  L  +Y     S V EKWP+ N Y+NHW+    M+  P        + +++  L   +E+W+GT+L  T  YG+R+Y  ++ L NHVDRV THV+SAI+++A +  D PWPL +  H G   +IT+ PGE++LYESA+ +HGRP +F+G+ + N F H+ P
Sbjct:   94 QFSVAQCGHPCHEHYGEEP-----CLERLDGRIRRAQLQPVWDSQNEDRRQTNRIQPQNLKNFTELGFEKRKIPDDVWELLRSYYENNKDSIVLEKWPSTNPYINHWESVPFMIWLPELHTGDETKRKIFEGLRPHLEEWSGTELEHTDLYGMRVYKNNTFLENHVDRVATHVVSAIMHIADKQ-DIPWPLNIYDHYGNEHNITISPGEMVLYESATCVHGRPSLFQGEYYVNAFAHFRP 327
[Close]
BLAST of mRNA_S-latissima_F_contig97.17461.1 vs. uniprot
Match: A0A7S4NSY5_9EUKA (Hypothetical protein n=2 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NSY5_9EUKA)

HSP 1 Score: 173 bits (439), Expect = 1.590e-48
Identity = 81/213 (38.03%), Postives = 125/213 (58.69%), Query Frame = 1 
Query:   76 WPDEEMTVRTARIRTEKNRLKLNQFQPPLVPRYTEVGYKKEKLNPDTYAYLMEWYNKASGSRVSEKWPADNSYVNHWKVDTIMVNAPARVRNRLYADLNQVMEDWAGTK--LRRTSCYGVRLYFRDSVLANHVDRVDTHVISAIINVAQENVDTPWPLYVRGHDGIAKSITMEPGEIILYESASVIHGRPEVFKGDLFANIFVHYAPVDGWTI 708
            W +    +   R   ++ RL LN+ QP   P +T+VGYK   L  + +  + +++     +   E+W  +N +VNHW+  + M+  P + +  L  +  +++E+W G +  L  TS YG+R+Y   S+L NHVDR  TH +SAII V Q   D  W L V GHDG+A+ + + PG++ LYESASV+HGR +   GD FAN+F+HY P + W +
Sbjct:  148 WIEPTKEIEAGRASFDRRRLHLNEIQPKQTPTFTDVGYKIVNLPENVWGEIKDYWKNNRHNMKLERWDQENHHVNHWQSPSYMLWLPHKTQRLLKIEAQKILEEWIGGEIPLEWTSLYGIRMYTNHSILLNHVDRSATHAVSAIIQVDQRVTDD-WLLEVIGHDGVARHLKLLPGQMALYESASVVHGREKPLNGDYFANLFIHYRPKNNWNV 359
[Close]
BLAST of mRNA_S-latissima_F_contig97.17461.1 vs. uniprot
Match: F0XYZ9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYZ9_AURAN)

HSP 1 Score: 180 bits (457), Expect = 7.630e-48
Identity = 88/200 (44.00%), Postives = 128/200 (64.00%), Query Frame = 1 
Query:  121 EKNRLKLNQFQPPLVPRYTEVGYKKEKLNPDTYAYLMEWYNKASGSRVSEKWPADNSYVNHWKVDTIMVNAP--------ARVRNRLYADLNQVMEDWAGTKLRRTSCYGVRLYFRDSVLANHVDRVDTHVISAIINVAQENVDTPWPLYVRGHDGIAKSITMEPGEIILYESASVIHGRPEVFKGDLFANIFVHYAPVD 696
            E++R+ +N+ Q P    +TE+G+ K +   + Y     +++    S  SE WPA N+YVNHWK D+ MV+           R +++++A    ++E W G  L+ TS YG+R YFR  +LA HVDR+   V S IINV Q+ VD PWP+ V GHDG+A ++T+EPG++ LYES +V+HGRP   KG+ FAN+FVH+ PVD
Sbjct: 1429 EESRMAMNRDQIPRQRNFTELGFAKIRAPENVYGPARAFWDLHKDSGTSEAWPAGNTYVNHWKADSHMVSLEDRRWQPLGLRTKDKIWAGAKPILEAWTGQTLKPTSLYGIRKYFRGGILATHVDRLPL-VTSCIINVDQD-VDEPWPIEVVGHDGVAYNVTLEPGDMALYESHTVLHGRPFPLKGNFFANVFVHFIPVD 1626
[Close]
BLAST of mRNA_S-latissima_F_contig97.17461.1 vs. uniprot
Match: A0A1Z5JHB2_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHB2_FISSO)

HSP 1 Score: 174 bits (441), Expect = 1.900e-47
Identity = 88/218 (40.37%), Postives = 137/218 (62.84%), Query Frame = 1 
Query:  118 TEKNRLKLNQFQPPLVPRYTEVGYKKEKLNPDTYAYLMEWYNKASGSRVSEKWPADNSYVNHWKVDTIMVNAP-ARVRN-------RLYADLNQVMEDWAGTKLRRTSCYGVRLYFRDSVLANHVDRVDTHVISAIINVAQENVDTPWPLYVRGHDGIAKSITMEPGEIILYESASVIHGRPEVFKGDLFANIFVHYAPV-------DGWTITDADVQ 726
            TE++R++++  QP  +  YT +GYKK K  P+ +  + E++N        E+W   N+Y N+W+  + MV+   A++R        +++     ++++W G +L + S YG+R+Y  D+VLA HVDR+   V SAIINVAQ+ +D PWPL V GH+G+A+++TMEPG+++LYES SV+HGRP   KG   ANIF+H+ P+       D   I D DV+
Sbjct:  143 TERDRIEMSLRQPQSMQNYTAIGYKKIKAPPELFKLIEEFWNNNHHKAKPEQWGTGNTYTNNWQSSSSMVSVEDAKLRGGGFTLKQKIWNAAKNILQEWTGEELTQCSLYGIRIYHADAVLATHVDRLPL-VSSAIINVAQD-LDEPWPLEVIGHNGVAENVTMEPGDMVLYESHSVLHGRPFPLKGRYMANIFIHFEPIGHSLRHYDNHNIGDVDVK 358
[Close]
BLAST of mRNA_S-latissima_F_contig97.17461.1 vs. uniprot
Match: A0A7S1YWR3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YWR3_TRICV)

HSP 1 Score: 166 bits (421), Expect = 2.040e-47
Identity = 83/205 (40.49%), Postives = 127/205 (61.95%), Query Frame = 1 
Query:  100 RTARIRTEKNRLKLNQFQPPLVPRYTEVGYKKEKLNPDTYAYLMEWYNKASGSRVSEKWPADNSYVNHWKVDTIMVNAP--------ARVRNRLYADLNQVMEDWAGTKLRRTSCYGVRLYFRDSVLANHVDRVDTHVISAIINVAQENVDTPWPLYVRGHDGIAKSITMEPGEIILYESASVIHGRPEVFKGDLFANIFVHYAP 690
            R+A  R E +R+ +N +QP L+  YT +G++K +     Y  L  ++     SR++E W   ++Y+NHW + T MVN            +  +++    + +++W G  L  +S YG+R+Y R +VLA HVDR+   V SAIINV Q+ V+ PWPL V  HDG+A ++TMEPG+++LYES SV+HGRP   +G  +AN+FVH+ P
Sbjct:   10 RSACERGESDRISMNLWQPRLMQNYTTLGFRKVRAPEKVYRLLRAFWRANRNSRLTEAWSEGDTYLNHWDMPTQMVNVDNPRLSGGGKELEWKIWDATREAIQEWIGKPLSTSSVYGIRIYRRGAVLAPHVDRLPL-VSSAIINVDQD-VNAPWPLEVIAHDGVAYNVTMEPGDMVLYESHSVVHGRPYPLQGSFYANVFVHFEP 212
[Close]
BLAST of mRNA_S-latissima_F_contig97.17461.1 vs. uniprot
Match: A0A7S2PFM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PFM3_9STRA)

HSP 1 Score: 172 bits (435), Expect = 2.100e-47
Identity = 89/202 (44.06%), Postives = 128/202 (63.37%), Query Frame = 1 
Query:  118 TEKNRLKLNQFQPPLVPRYTEVGYKKEKLNPDTYAYLMEWY--NKASGSRVSEKWPADNSYVNHWKVDTIMVN--------APARVRNRLYADLNQVMEDWAGTKLRRTSCYGVRLYFRDSVLANHVDRVDTHVISAIINVAQENVDTPWPLYVRGHDGIAKSITMEPGEIILYESASVIHGRPEVFKGDLFANIFVHYAPV 693
            TE +R++++  QP  +  YT++G+KK K  P  +  +  ++  NK   +   E WP  N+Y NHW   T MV+        A ++++NR++      +E+W G +L + S YG+R+Y   S+LA HVDR+   V SAIINV Q+ VD PWP+ V GHDG A ++TMEPG++ILYES SV+HGRP   KG  +ANIFVH+ PV
Sbjct:  157 TEDDRVEMSLRQPAGMQNYTDIGFKKIKAPPAVWDQVKVFWEANKDRKNWQDENWPKGNTYTNHWVAPTYMVSVEDGRLRGAGSKLKNRIWNAAQSTIEEWTGQELTKCSLYGIRVYTEGSILATHVDRMPL-VSSAIINVDQD-VDEPWPIEVYGHDGKAYNVTMEPGDMILYESHSVLHGRPFPLKGRYYANIFVHFEPV 356
[Close]
BLAST of mRNA_S-latissima_F_contig97.17461.1 vs. uniprot
Match: A0A6H5KTG8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTG8_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 3.120e-47
Identity = 84/218 (38.53%), Postives = 134/218 (61.47%), Query Frame = 1 
Query:   49 EANGSAAHMWPDEEMTVRTARIRTEKNRLKLNQFQPPLVPRYTEVGYKKEKLNPDTYAYLMEWYNKASGSRVSEKWPADNSYVNHWKVDTIMVNAP--ARVRNRLYADLNQVMEDWAGTKLRRTSCYGVRLYFRDSVLANHVDRVDTHVISAIINVAQENVDTPWPLYVRGHDGIAKSITMEPGEIILYESASVIHGRPEVFKGDLFANIFVHYAPVD 696
            E  G++      +++  R AR + ++ RL  N+ QP  +PR+TEVG+KK  +  D +  +  +Y +   S   EKW  +N + N+ +  + MVN P   +++ +++  L  ++E+W+G +L +T+CYGVR+Y   S LANHVD   TH +S I+ V Q+ V+  WPL +  H G   +ITM+P +++LYESA+ +HGRP  F G+ +AN FVHY P D
Sbjct:  242 ETCGTSEGTETPQDVASRNARKQMDQGRLVNNRKQPEGLPRFTEVGFKKTTVPDDVWDLVKTYYEENKESPKKEKWSKNNVFTNNVEAPSYMVNLPENGKLKEQIFGGLRPILEEWSGVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQD-VEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTFHGNYYANAFVHYKPKD 458
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig97.17461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDK4_9PHAE3.710e-11262.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHL7_ECTSI2.770e-9755.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4UF91_9EUKA1.520e-4942.36Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A7S2THP0_9EUKA6.590e-4935.42Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S4NSY5_9EUKA1.590e-4838.03Hypothetical protein n=2 Tax=Paramoeba aestuarina ... [more]
F0XYZ9_AURAN7.630e-4844.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1Z5JHB2_FISSO1.900e-4740.37Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S1YWR3_TRICV2.040e-4740.49Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2PFM3_9STRA2.100e-4744.06Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A6H5KTG8_9PHAE3.120e-4738.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig97contigS-latissima_F_contig97:506209..513031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue1.9e-42
Seed eggNOG ortholog44056.XP_009032975.1
Preferred nameMRPA
KEGG koko:K05666
KEGG TC3.A.1.208.2
KEGG Pathwayko01523,ko01524,ko02010,ko04976,map01523,map01524,map02010,map04976
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_004100.1
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons5
Model size808
Cds size714
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.3268435-UTR-S-latissima_F_contig97:506208..5062801622817372.3268435-UTR-S-latissima_F_contig97:506208..506280Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig97 506209..506280 +
1693926513.822276-UTR-S-latissima_F_contig97:506208..5062801693926513.822276-UTR-S-latissima_F_contig97:506208..506280Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig97 506209..506280 +
1622817372.4020452-UTR-S-latissima_F_contig97:513009..5130311622817372.4020452-UTR-S-latissima_F_contig97:513009..513031Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig97 513010..513031 +
1693926513.9030995-UTR-S-latissima_F_contig97:513009..5130311693926513.9030995-UTR-S-latissima_F_contig97:513009..513031Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig97 513010..513031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.3415914-CDS-S-latissima_F_contig97:506280..5063881622817372.3415914-CDS-S-latissima_F_contig97:506280..506388Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig97 506281..506388 +
1693926513.8415651-CDS-S-latissima_F_contig97:506280..5063881693926513.8415651-CDS-S-latissima_F_contig97:506280..506388Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig97 506281..506388 +
1622817372.3548367-CDS-S-latissima_F_contig97:509692..5098631622817372.3548367-CDS-S-latissima_F_contig97:509692..509863Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig97 509693..509863 +
1693926513.8513346-CDS-S-latissima_F_contig97:509692..5098631693926513.8513346-CDS-S-latissima_F_contig97:509692..509863Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig97 509693..509863 +
1622817372.3679895-CDS-S-latissima_F_contig97:511475..5116401622817372.3679895-CDS-S-latissima_F_contig97:511475..511640Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig97 511476..511640 +
1693926513.860787-CDS-S-latissima_F_contig97:511475..5116401693926513.860787-CDS-S-latissima_F_contig97:511475..511640Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig97 511476..511640 +
1622817372.378947-CDS-S-latissima_F_contig97:511997..5120691622817372.378947-CDS-S-latissima_F_contig97:511997..512069Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig97 511998..512069 +
1693926513.8733845-CDS-S-latissima_F_contig97:511997..5120691693926513.8733845-CDS-S-latissima_F_contig97:511997..512069Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig97 511998..512069 +
1622817372.3901153-CDS-S-latissima_F_contig97:512811..5130091622817372.3901153-CDS-S-latissima_F_contig97:512811..513009Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig97 512812..513009 +
1693926513.8860352-CDS-S-latissima_F_contig97:512811..5130091693926513.8860352-CDS-S-latissima_F_contig97:512811..513009Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig97 512812..513009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig97.17461.1prot_S-latissima_F_contig97.17461.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig97 506281..513009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig97.17461.1

>prot_S-latissima_F_contig97.17461.1 ID=prot_S-latissima_F_contig97.17461.1|Name=mRNA_S-latissima_F_contig97.17461.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=238bp
MWPDEEMTVRTARIRTEKNRLKLNQFQPPLVPRYTEVGYKKEKLNPDTYA
YLMEWYNKASGSRVSEKWPADNSYVNHWKVDTIMVNAPARVRNRLYADLN
QVMEDWAGTKLRRTSCYGVRLYFRDSVLANHVDRVDTHVISAIINVAQEN
VDTPWPLYVRGHDGIAKSITMEPGEIILYESASVIHGRPEVFKGDLFANI
FVHYAPVDGWTITDADVQRAALEASRKKRSEQKTAKG*
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mRNA from alignment at S-latissima_F_contig97:506209..513031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig97.17461.1 ID=mRNA_S-latissima_F_contig97.17461.1|Name=mRNA_S-latissima_F_contig97.17461.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=6823bp|location=Sequence derived from alignment at S-latissima_F_contig97:506209..513031+ (Saccharina latissima SLPER63f female)
CAGTTCGCACTCTGCAACGTGGGGTCTGCCTGCCGCGAAGACTTTCGTGA
GGCGAACGGAAGCGCCGCACACATGTGGCCCGACGAGGAGATGACAGTTC
GAACGGCTCGCATCCGAACGGAGAAGAATCGGCTGAAGCTGAACCAGTTC
CAACCCCCGCTGGTCCCGCGATACACCGAGGTAAGCTCAACCCCTTCAGA
GCTGCCCCTAGTAATCAAGTTATACTATAACGCCGATCGCCCCGGTAGAC
TAGTGGTCAGCTTCAAAGACTACTGGCATTGGTACCCAAGTTCGAATCCC
ACCGTGGTGAGATTTTTACTTTATTTGAAAAAATAAAAAGGAACCAATTG
CTGAGAGCGCGCCTTCGTGGCGTGGGTAGGCGGAATCCGACGCAAGTCGA
CGAGGAAAGACAGTGCTGAAATCTTCTCGCGATAAAAATGGAAGGCAAGT
ACCGTAGTGGGGAGGGGGGAGAAGAGCCAACTTAGTGACCCCGGATCTGA
GTTACGACTGGAGAGGGAGGGAGAAAAGAAGGGCGAAAATAATAAATGGG
ATGGACAAAAAAAACAAAACAAAAAAAAAATACACCGAGGTAAGCTAAGC
CCTCTTGGGAGTTGATTGGCTTGAGTATAGTATAGTATAGTAAAGTGACT
ATATTTTCACGGCAGCGGCCATCTAGTACTACTGTAGTACTTATACTACC
ACTACTCCGTGATTGGGGGGTGATATAAACTCCAGTAGTAGTATAAGTAT
CATACAGTGGTTGCTGTCCGAGTTAAAATGGTTGCAATGCAAGAAGTCGT
ACGGCACGGGCGCAACATTTCAAGATGCTCCTATATACCCGTACCGTACT
GCCCCTCAGTCTACTGCTGGATAGACGGGTGATAACACCAAACTCGTATC
ATTTGCTTGGTCGCTATCCCCTGTATCCCTCCTATCCCTTGTAAGGGGCC
TTATTTCCCTTTTAAGGGGCCTTATTTCCCTTAAACAGGGTCCCAAGGGG
GTTAATCGCGCGCTTTCCTTCGGTTTGCTGTTGGCAAGGACGGCCAAAGG
TTTCACAGATCGGACAGATAGATCATCTGTAGATAAGATCAGATATATAA
TATCATCTACAGATACATCAGATGGATCAGATAGATCATCTAGACATCAT
CTCGATCCTAACCTGCCGCCAGCACAGATCCGACCGAAGAAGCATGTCCT
AGATAATTCAGCGTATTACGGCTCCCACCCGCAAACACGAGGCAGATCAT
ACAGATCATACAGATCATACAGATCACACAGACCAGGAATATACCTGCCC
TGAAAAATCTAGGCAATGAACTGTGGGGGATCGGTGATCTGTTTGATCTG
AGGTGTGAAATGGTGAAAGGCTTGGTTACGCCAGAGAGTGAGAGCGGGGG
CTCTTATTATTAGGCCTTTTGGCAGAGAAGCGGTCCATGCCAGAAAATCC
CGGCGGTATCGTATGTACTGCTGTACTACAACACTATTAATAGAGCAGTA
CGTAGGTCCTTTGCGTATTGCGTATTGCGTATTGCTACAGCCGTAGATCT
GTCGAGTCTAATGTATAGCATGCACGGTCAGTAGATCGCGCCGCCTATTT
CAATCTCCTTTTTTTTTTTTTTTTTTTTTGTCCATCCCATTTATTATCGT
CGCCCTTCCTTTCTCTCTCCTTCCTAGTCGTAACTCAGATCCGGGGTCAC
AAAGTAGGCTCTTCTCCCTCCTCCCCCACTACGGTGCTTGCCTTGCTTTT
TATCGCGAGAAGATTTCAGCACTTTCTTCCCTCGTCAACTTTCGTCGAAA
TGTGCTTACCCACGCTATAATATGCGCTCTCGACAGTTGGTGTCATTTTG
AGAATATAAATCTCCATACGAGGAGAATCGAACCCCCGACCTCCAACGCT
AACAGGCTTCGTGGCTACCTGTTAGACCACCGTCCTTTGGCGATGACTGG
CTTGCTGTTCGTCCGCTTTTTCATGTTGCTGTTGCAAAATTCAGTTTTCC
TTCTTTTTGTCTTTTCGCGATGTCGGTATAGTACTAACAGCAGTACATCG
TATACCTGGTACATATTATAGTAGTGTATACTAATAAACTTAAAATACAC
ACCCTCTGTGAGATCGAGGATTTCGTCGGAAAAACGTTCGTCGAAACTCA
TCTTCACAATCCGCGTGTCAGATCAATATGAGATTTTCATCGCGCGTCCC
ACGACATGTGTGTTCTGCTTCGTGCGGCCGTCCAGTTCTACTATTAAACT
GCTGGTGGTGATCCATTATAACAACTAGCAACCCTATCGCCAAACACGTT
TGTATACTGCATCCTTATTACCTATAACAACTCATATGCCACCTCATATA
TACCGTTCTTAGCCCTTTTAGAACTGCAGTCCCGTTTTGAGGACAAATTA
CTTGGAATTAGAGCCAAATACATAGGCATGTGTACTGGAGTACTACTGTA
AAAGGGTTAATTCGTTCGGCTTATGGACGACCTGCCATTGGGACAGAGAG
GCCCATTGTATTCCCTAGTATATAGCAGGTACCAGGCATACGTTAATTTA
TGTAGGGAATTGGGTGAGTGAAAATTAATGAATTAATGGCTTGGGGTACG
ACAGCAAGTGCGACTTCATTAGTTTTTATCTTCGATGCACACGATAATTT
GTGCCAAATAACGGTACAGGTAGAGGTATACGGTACACCGTTTTTTGGCT
GAAACGTTTTCGGAAAAACCGTCGGAGTGTCACCATTTTTGCGCTGGATC
ATTTTTCGTTGTATACGTATTAATTATTGCATTAGTTCATCGATTAATAG
TTACTCCATGGGATTGTTCATCGATTAATAGTTACTCCATGGGATTGTTC
ATCGATTAATAGTTACTCCATGGGATTGTTCATCGATTAATAGTTACTCC
ATGGGATTGTTCATCGATTAATAGTTACTCCATGGGATTGTTCATCGATT
AATAGTTACTCCATGGGATTGTTCATCGATTAATAGTTACTCCATGGGAT
TGGTTCATCGATTAATAGTTACTCCATGGGATTGTTCATCGATTAATAGT
TACTCCATGGGATTGTTCATCGATTAATAGTTACTCCATGGGATTGTTCA
TCGATTAATAGTTACTCCATGGGATTGTTCATCGATTAATAGTTACTCCA
TGGGATTGTTCATCGATTAATAGTTACTCCATGGGATTGTTCATCGATTA
ATAGTTACTCCATGGGATTGTTCATCGATTAATAGTTACTCCATGGGATT
TGATTGTTCATCGGGTACGTATAATATAATAGCTCGTTTATTTTCCTCCA
AAGGCATGGCTTACTACTACGTAGTATTAGTATAGAGCTCCTTAACTGAG
GAGCCTTGAAAAAAAAATGGTTCACCTCTACCTCTATCTATACCTTGAGA
TAGCATGCGTCATACCTGGTATGTATTATATATTACATATTCTTTTTTTG
TGTACAAAATATGCCGTTTTGTTTCGGTACACAGGTCGGTTACAAGAAGG
AAAAGCTGAACCCGGACACGTACGCGTACCTGATGGAGTGGTACAACAAA
GCTTCCGGGAGTCGCGTATCGGAGAAATGGCCGGCCGATAACTCGTACGT
GAACCACTGGAAGGTGGACACCATTATGGTCAACGCGCCCGCAAGAGTCC
GCAATGTGAGCCTTTTCTTTGTCAGAGAAATAAATGAAAAAAAAAAATAT
TGTCTCCTCAGGGCCCCGCGTTAACGAGGAAATGCCAAAAATCCAATTTG
GAAAAATACAGTGTAAAATGTGATTTGCATTTCACTGATCTAAACGTCCA
CACGCGCACGACCACCAAATATTAGGATTTTGGGGTATATATCGAATTGG
ATTTGGACGAAGAAAAGCAAGAAGGTTTAAAATACTTCTTTGGGGTATAA
GCCTATTCCAATTTGGGAGTTGACCCGGCTTGGGCTGGCATGTTCACGGT
GGGCCACCACCCCCCCCCCCCCGCCGGATATCCCGGCGCTTTTCGTGATG
GCATCGATGACCACAACCGAGGCGATAAAACGTGAACCACAACGTAAGAA
TCACCGGGGCAACAGCCTTGCCCACGCGTGCAGAGCACAGAACAGCGTAC
CCCTTCCGTTGGCGCCTGAAAAAAGTACAATCATGGCGGCCACGATCGCA
ATTTCTTCAACCAGCTCGATCGGCCAAACCGCACGAGAACCGAGTGATTG
ACCCAAAAAACGCAGGAGACGCTCAAGACCTCGATAGCTACATCGCCGTC
ACTGCATTGTCGCGCCCGTGGCGTTTTCGGGATCCCTTCGCCCACCCAGG
AGGCCCTGAGAGGGAAATAAAGCTTCCTAACCTGCGCCGCCAAAAATGAA
AAGAGGCTGGCGCCGGCGGCGGCGGCGGCGGCGCGCACGCGCCGACCCAT
GGCGTTGCTCCCGTTATACCCTTGTCGGTGTTTGTCAGCTCGAGTCATTG
TGTGACGTGCTGAGTTATTCGGGTTTCAGAAATATGCGAATCACATAATT
CGCCTTTCCCGATACACATAGGGGACGCAAACACGTGTTTTTATTGAAAT
CAAAACCTAATTGAAAAAAAAAACGTTTTCCATTATTTTATTTTATTTTG
TTGTCCCGTTAATATGTGTATATATATTCCATCCCCTTTGTGATCTTAGC
CTTTCTTTTCTCTCTCCTTCCTAGTCGTAACTCAGATCCGGGGTCACAAA
GTAGGCTCTTCTCCCTCCTCCCTCCCCACTACGGTTCGTGCCTTGTGTTT
TTATCGCGAGAAGATTACAGCCCTTTCTTCCCTCGTCGACTCGCATCGAA
TTGCGCCTACCCACGCTACTAGGCGCTCTCAGCAGTTGATTCCGTTTTTT
TTTTTTTCAAATAAACTCAAAAGTCCGACCCACGTGAGGTTCAAACCCCA
GAAACAAGTCTTACTGTAGTAGCATTCAAGGGTACCACTAGACCATCGGG
GCGACCGATTATACACGGTATATCGAAACTTTGAGGTTTTGATACTTTGA
TATATCGAAGCGTTCGAGTCGACATCCAACAGCATCGGTGGTATACACGA
GGTGGACTGAAACTCAAAAACCTTCACCCTGTTCCTCTGTTCCAGCATCT
CTACGATACATTAAATCCACACCTCATGCCTGGGTTGATATATATCGAAA
ATGCTTTTTTTTTAATACTTTGATTTATCGAAAGTTTTGACACGACGCCC
AACACTGCTGCCGATTGTACCAGAGGTGTCATTGATCTCAAAACCATGCG
TTGTTCCGTTGTCCCAGCGCCTCTACGCCGACCTGAACCAAGTCATGGAA
GACTGGGCGGGGACGAAGCTTAGGCGCACGTCTTGCTACGGTGTGCGGCT
GTACTTTAGGGACAGCGTGCTGGCCAATCACGTCGATCGGGTCGATACGC
ACGTCATCTCCGCCATCATCAACGTTGCGCAGGTGACTTGTGCGGTACGG
TAGAATGTAGAGTGTGGTATGGTATGGTATGGTATGGTATGGTATGGTAT
GGTATGGTATGGTATGGTATGGTATGGTATGGTATGGTATGGTATGGTAT
GGTGTGGTGTGGTGTGGTGTGGTATGGTATGGTATGGTGTGGTATGGTAT
GGTATGGGTATGGTATGGTATGGTATGGTATGGTATGGCATGGCATGATA
TGGCATGTTATGGTATGGTATGGTATGGTATGGTATGGTATGGAGTGGCG
TTGCTTGTGCTGGTTGCTGTTCGCTGTACACTCGTAAATACATCGCTGTT
TGATGCTGCTGCTGTTGCTGCATTTTCTCCCGGGCTCAGGAGAACGTGGA
TACCCCTTGGCCCCTGTACGTGCGTGGTCACGACGGGATTGCCAAAAGCA
TCACCATGGAGGTCAGTACGTACACGAACCGTATTTGCATTGTATTCCGT
ACTGTGTTTTGTATCCATTATCCAGCCGTCAGCAGAGTACCGATGCAGTA
GCTCCCTATTGCAACAAAAATAGACTACAGCAGTAGGTCGGTAGCGAGCA
GTGGAGGTCAGCACACAAAGTATTTGTACATTTGCGACGCACTGCGGTTT
GTATCCAGTATCCAGCCGCCAACATTCGGCTGTACCGACACAGTATGGTG
ACGATGACGATGATGATGATGATGATGGTGATGATGATTGCGATGATGAC
GATGATGATGATGATGATGATGATGATGATGATGATGATGATGTTGATGA
TGATGATGTTGATTAATGACGATGGTGATGATGGTGATCGTGATCGTGAT
GATGATGATGATGATGGCATGAACATTATTATGATTATGATGGTAATAAC
AACATTTCTCAGTAGTACGTAGGCTGAGCACTGGCACAGCATGTACTGGC
AGTAGTAGTCTACTGATTGGCCCGGCCAGTATATTCGTTTTTTCTTACCT
ACATCCAAGAAACACGCCATGTTATAGTACAGAAACCCACCAAATGCGTT
TCAGAAAGAGAGAGGAGAGGCAGGATACTGGTGCAATACAGTACACTGAT
TGATTTTGACGACAGTACAATCGCTACTGACTGAGTCAGCCAATGCCCAG
CCCTAACTTTACCATTACTCTCTTGTATGCTCATGTTTTTTTTTTTGCAT
CAGCCGGGAGAGATCATTTTGTACGAGAGCGCGAGCGTCATCCACGGCCG
GCCCGAAGTGTTCAAAGGGGACCTGTTCGCCAACATTTTCGTGCACTACG
CTCCCGTAGACGGCTGGACCATCACCGATGCAGACGTGCAGAGGGCGGCC
CTCGAAGCCTCTCGAAAAAAACGCTCTGAGCAAAAAACGGCCAAGGGATA
GGACAGCAGAGAGTGGGAGAGCA
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Coding sequence (CDS) from alignment at S-latissima_F_contig97:506209..513031+

>mRNA_S-latissima_F_contig97.17461.1 ID=mRNA_S-latissima_F_contig97.17461.1|Name=mRNA_S-latissima_F_contig97.17461.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1428bp|location=Sequence derived from alignment at S-latissima_F_contig97:506209..513031+ (Saccharina latissima SLPER63f female)
ATGTGGCCCGACGAGGAGATGACAGTTCGAACGGCTCGCATCCGAACGGA
GAAGAATCGGCTGAAGCTGAACCAGTTCCAACCCCCGCTGGTCCCGCGAT
ACACCGAGATGTGGCCCGACGAGGAGATGACAGTTCGAACGGCTCGCATC
CGAACGGAGAAGAATCGGCTGAAGCTGAACCAGTTCCAACCCCCGCTGGT
CCCGCGATACACCGAGGTCGGTTACAAGAAGGAAAAGCTGAACCCGGACA
CGTACGCGTACCTGATGGAGTGGTACAACAAAGCTTCCGGGAGTCGCGTA
TCGGAGAAATGGCCGGCCGATAACTCGTACGTGAACCACTGGAAGGTGGA
CACCATTATGGTCAACGCGCCCGCAAGAGTCCGCAATGTCGGTTACAAGA
AGGAAAAGCTGAACCCGGACACGTACGCGTACCTGATGGAGTGGTACAAC
AAAGCTTCCGGGAGTCGCGTATCGGAGAAATGGCCGGCCGATAACTCGTA
CGTGAACCACTGGAAGGTGGACACCATTATGGTCAACGCGCCCGCAAGAG
TCCGCAATCGCCTCTACGCCGACCTGAACCAAGTCATGGAAGACTGGGCG
GGGACGAAGCTTAGGCGCACGTCTTGCTACGGTGTGCGGCTGTACTTTAG
GGACAGCGTGCTGGCCAATCACGTCGATCGGGTCGATACGCACGTCATCT
CCGCCATCATCAACGTTGCGCAGCGCCTCTACGCCGACCTGAACCAAGTC
ATGGAAGACTGGGCGGGGACGAAGCTTAGGCGCACGTCTTGCTACGGTGT
GCGGCTGTACTTTAGGGACAGCGTGCTGGCCAATCACGTCGATCGGGTCG
ATACGCACGTCATCTCCGCCATCATCAACGTTGCGCAGGAGAACGTGGAT
ACCCCTTGGCCCCTGTACGTGCGTGGTCACGACGGGATTGCCAAAAGCAT
CACCATGGAGGAGAACGTGGATACCCCTTGGCCCCTGTACGTGCGTGGTC
ACGACGGGATTGCCAAAAGCATCACCATGGAGCCGGGAGAGATCATTTTG
TACGAGAGCGCGAGCGTCATCCACGGCCGGCCCGAAGTGTTCAAAGGGGA
CCTGTTCGCCAACATTTTCGTGCACTACGCTCCCGTAGACGGCTGGACCA
TCACCGATGCAGACGTGCAGAGGGCGGCCCTCGAAGCCTCTCGAAAAAAA
CGCTCTGAGCAAAAAACGGCCAAGGGATAGCCGGGAGAGATCATTTTGTA
CGAGAGCGCGAGCGTCATCCACGGCCGGCCCGAAGTGTTCAAAGGGGACC
TGTTCGCCAACATTTTCGTGCACTACGCTCCCGTAGACGGCTGGACCATC
ACCGATGCAGACGTGCAGAGGGCGGCCCTCGAAGCCTCTCGAAAAAAACG
CTCTGAGCAAAAAACGGCCAAGGGATAG
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