mRNA_S-latissima_F_contig1078.655.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1078.655.1
Unique NamemRNA_S-latissima_F_contig1078.655.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1078.655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1078contigS-latissima_F_contig1078:144727..147137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size247
Cds size243
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1078.655.1prot_S-latissima_F_contig1078.655.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1078 144729..147137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815457.5638235-CDS-S-latissima_F_contig1078:144728..1448221622815457.5638235-CDS-S-latissima_F_contig1078:144728..144822Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1078 144729..144822 -
1693924893.7111747-CDS-S-latissima_F_contig1078:144728..1448221693924893.7111747-CDS-S-latissima_F_contig1078:144728..144822Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1078 144729..144822 -
1622815457.5772693-CDS-S-latissima_F_contig1078:145943..1460121622815457.5772693-CDS-S-latissima_F_contig1078:145943..146012Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1078 145944..146012 -
1693924893.719114-CDS-S-latissima_F_contig1078:145943..1460121693924893.719114-CDS-S-latissima_F_contig1078:145943..146012Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1078 145944..146012 -
1622815457.5899045-CDS-S-latissima_F_contig1078:147057..1471371622815457.5899045-CDS-S-latissima_F_contig1078:147057..147137Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1078 147058..147137 -
1693924893.7302012-CDS-S-latissima_F_contig1078:147057..1471371693924893.7302012-CDS-S-latissima_F_contig1078:147057..147137Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1078 147058..147137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1078.655.1

>prot_S-latissima_F_contig1078.655.1 ID=prot_S-latissima_F_contig1078.655.1|Name=mRNA_S-latissima_F_contig1078.655.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=81bp
RTLPTAVWPDDELEGGLPFAFLERLPRQRDVNGSLRRRGLLLAAGGNPRR
ETLVGGVGGSGGCRDILLIGTTRRRRVQEAL
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mRNA from alignment at S-latissima_F_contig1078:144727..147137-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1078.655.1 ID=mRNA_S-latissima_F_contig1078.655.1|Name=mRNA_S-latissima_F_contig1078.655.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=2411bp|location=Sequence derived from alignment at S-latissima_F_contig1078:144727..147137- (Saccharina latissima SLPER63f female)
CGTACCCTGCCCACAGCCGTGTGGCCCGACGATGAGCTCGAGGGAGGCCT
GCCCTTCGCCTTCCTGGAGAGACTTCCGAGGTGATGGCTTCGCCCAAAGA
GTCGTAGCAGTAGCAGATACAGCCGCAGCGGCGTATCTCTGCAAAGGGGA
GACTTCTTTTTTATTTTCAAGCGTCCTTTGTTTTGTTTCATATTTTTCAG
CTCTGGTATCTGACATTTTTGTCAATTTTGTCCGTAATTGTAATGTCGCA
TTATATATCGATGTTAGTGATGAAACGTTGCTTACATTTTCGGACTTACG
TTTTGTGGACGATATGCGTACCTGCGCTGGTGGGATGATGAATCTCCACA
ATACATTCCATGGTTGATGAAACCCAAAAAAAGCTTATTTACTTGGTTAA
TGTATAGCGAGGTAAAAATATATTGCAGTTTTTCTGTCGAGCGCACAGTA
TAACCAAGACACGCCGCATTTTTCGAAACCAAACATATCTCTGGGATCAA
CTACCACGCTTAATGACGAAAATATAAGAAACGTTTAAATTTATTTTTAT
AATCACTATGTTTCTTATATTTACGTCCAGGGTGAGTGCAGGGCAGGATA
AGCGAGCGCGTAGAGGGAGGGGGAAGGGTTCCCAGATGCAATTTTCACTG
ACGTAAGCAGCAACCCCAACTAACTGCCAACCAACGTAGCGGATGATAGT
CAAGGTACCATACGCGTACCGTATATAACTGCCAACCAAAGTAGCGGATG
ATAGTCAAGTTACCATACGCGTACCGTATGAAACGAACCTCTTGAGCCTT
GTTATAGTCGGTTACGCACAACAAGGTTGAGTAACTATACCTGTACAACA
AGCAGCAGTATATATTCATAGCAGCAGCAGCGGCACCGCAATTTTTTTTT
TCGCGTTCGTCATCGCGTCGCACGCACAGACCGAGCTGGCCACAAGGCGG
CACGTTTTCTCCTTTTCCATCCCCCCACCCAAGCTTATTCCAACTGGCTG
CGTACTCGAACAGACACCCTCATCATCACCAGCAAGAACAACGGCGATAC
CAGCAACAACAATAGCAAGGCTCCTGCCCCCCCCCCCCCCCCCCCCCCGC
TGCTCCGCCTCTGACCACCGAACAGACAGAGGGACGTAAACGGCAGTTTG
AGGAGGAGAGGCCTCTTGCTCGCAGCTGGAGGCAACCCAAGAAGGTAGGC
ATCGCGCAGGAAGGAGAGATGAAAAGAGAGGGAGAGGAGAGACGGGGGAC
CCCCCCCCCCCCGCCCCCCGCCCCCGAAGCAACAAGCCGTCGTAGCTGCT
GCAGCTGCCGCCGCTGCTATATTCTGTGGGTGGTTTGCTGTGGTATGGGG
GTATAGGTTGCTTGGTGGTGGTGGTGTTGCTGGAAAGTGTGGTGCTGTTG
CTGGTGCAGTTGCTTGCTGCCTTCTTTTTCTGTCCGTGTCTGGTGTTAGC
TGCTGTTTGCGTTGCAAGATTGTTTGCTTGTGCGACCTCCGAGACCCGGT
CAGACCCCCTCCATAAAATTGGTTCGCGTCAGCCATGAACACGATCGATC
GATTGCCGGTGCTAACTGGAGCAAGAGTGCATATGCAACAGTGTACCTGG
TACTACGTGATACTGCTGCTGTGTTGCAGCGTCATAAACATATCTTCACG
CGATGTAAGAGTATCGCGTGCTGTGATCTGTGATACGTGGTATGATACCT
GGTTAGAGTATTAATCATAGTATATTTGTAGTACCGATTTCTGTTGCATA
ATAATACCAAAAGATGCGATAACGAGCATTGTTTGTTCCGGGGTTGTTTT
GATTTCAGTATTGAGAGATGGGTTGACCTGTTTTTTTATCTCTTGACACA
AAAACACAAGATATCAAAAAGTTAAAATCTTGTTTGTGTTGTATTTTTAA
GTGGTATATACATATACTGCTGCTGCTGTTGCTGTTGTACCATAAAAAGC
TTCATCGATATCGGTATCTTGATACCAGTATATCTGATTATTTGCCGCAG
TTGCTTTTTATATTGGTTATATCCAATAGGCACGATATTATATTTTATAC
GATATATTTTGATATTTTCTGCTTGATTATCGGGTTATTATTAGTTTATT
TGTTGATTACTTGCCCCGCCTTGTTGAAATTGTTTACAAATTCATTGCAT
CGTTATCGCATTTGGCGTTCGTTCATTGTTTCCCTTGGGAGTGTTAACCG
TCGTTGACTACACGAGGTAGGAGTACGTACCCCCCCCCCCCTCTCTAACA
CCTACTCTGTTGTAACCCCCCCCCCCTTCCCCCGCTCCCCCCCCCCCTTC
CGCGCAATTCTATAGGGAAACTCTCGTGGGTGGTGTTGGAGGTAGTGGTG
GTTGTCGAGACATTCTGTTGATCGGGACAACACGCCGGCGGAGAGTGCAG
GAGGCGCTCCG
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Coding sequence (CDS) from alignment at S-latissima_F_contig1078:144727..147137-

>mRNA_S-latissima_F_contig1078.655.1 ID=mRNA_S-latissima_F_contig1078.655.1|Name=mRNA_S-latissima_F_contig1078.655.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=486bp|location=Sequence derived from alignment at S-latissima_F_contig1078:144727..147137- (Saccharina latissima SLPER63f female)
CGTACCCTGCCCACAGCCGTGTGGCCCGACGATGAGCTCGAGGGAGGCCT
GCCCTTCGCCTTCCTGGAGAGACTTCCGAGCGTACCCTGCCCACAGCCGT
GTGGCCCGACGATGAGCTCGAGGGAGGCCTGCCCTTCGCCTTCCTGGAGA
GACTTCCGAGACAGAGGGACGTAAACGGCAGTTTGAGGAGGAGAGGCCTC
TTGCTCGCAGCTGGAGGCAACCCAAGAAGACAGAGGGACGTAAACGGCAG
TTTGAGGAGGAGAGGCCTCTTGCTCGCAGCTGGAGGCAACCCAAGAAGGG
AAACTCTCGTGGGTGGTGTTGGAGGTAGTGGTGGTTGTCGAGACATTCTG
TTGATCGGGACAACACGCCGGCGGAGAGTGCAGGAGGCGCTCGGAAACTC
TCGTGGGTGGTGTTGGAGGTAGTGGTGGTTGTCGAGACATTCTGTTGATC
GGGACAACACGCCGGCGGAGAGTGCAGGAGGCGCTC
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