mRNA_S-latissima_F_contig1076.649.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1076.649.1
Unique NamemRNA_S-latissima_F_contig1076.649.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig1076.649.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 1.180e-43
Identity = 73/90 (81.11%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:    1 VFASGGNHTTSHAHWGYYMITAVFLQLFTGWMRTKGLEAKHANFSFLHRVNKHFHIWAGRFAYLAGVVQCYRGLELVASSDELVFSAGDG 270
            VFAS G  + +HAHWGYYMI AV +Q+FTGWMRTKGLEAKH+NFS LHR NKHFHIWAGRFAY AGVVQCYRGLELV+S DEL+FSAGDG
Sbjct:  716 VFASRGRTSEAHAHWGYYMIAAVAMQIFTGWMRTKGLEAKHSNFSLLHRFNKHFHIWAGRFAYAAGVVQCYRGLELVSSDDELIFSAGDG 805
[Close]
BLAST of mRNA_S-latissima_F_contig1076.649.1 vs. uniprot
Match: A0A6H5JQ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ31_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.990e-43
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:    1 VFASGGNHTTSHAHWGYYMITAVFLQLFTGWMRTKGLEAKHANFSFLHRVNKHFHIWAGRFAYLAGVVQCYRGLELVASSDELVFSAGDG 270
            VFAS G  + +HAHWGYYMI AV +Q+FTGWMRTKGLEAKH+NFS LHR NKHFHIWAGRFAY AG+VQCYRGLELV+S DEL+FSAGDG
Sbjct:  700 VFASRGRTSEAHAHWGYYMIAAVAMQIFTGWMRTKGLEAKHSNFSLLHRFNKHFHIWAGRFAYAAGLVQCYRGLELVSSDDELIFSAGDG 789
[Close]
BLAST of mRNA_S-latissima_F_contig1076.649.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 8.040e-41
Identity = 70/90 (77.78%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:    1 VFASGGNHTTSHAHWGYYMITAVFLQLFTGWMRTKGLEAKHANFSFLHRVNKHFHIWAGRFAYLAGVVQCYRGLELVASSDELVFSAGDG 270
            VFAS G  + +HA WGYYMI AV +Q+FTGWMRTKGLEAKH+NFS  HR NK FHIWAGRFAY AGVVQCYRGLELV+S DEL+FSAGDG
Sbjct:  715 VFASRGRTSEAHARWGYYMIAAVAMQIFTGWMRTKGLEAKHSNFSLFHRFNKFFHIWAGRFAYAAGVVQCYRGLELVSSDDELIFSAGDG 804
[Close]
BLAST of mRNA_S-latissima_F_contig1076.649.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 5.440e-38
Identity = 65/90 (72.22%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    1 VFASGGNHTTSHAHWGYYMITAVFLQLFTGWMRTKGLEAKHANFSFLHRVNKHFHIWAGRFAYLAGVVQCYRGLELVASSDELVFSAGDG 270
            +FASGG H   HAHWGYYMI AV  Q+ +GW+R KGL  K+ANF   HR NK FHI+AGRFAYLAGVVQCYRGLELVAS D+L+FSAGDG
Sbjct:  290 IFASGGEHQNEHAHWGYYMIAAVIAQVLSGWLRVKGLGGKNANFCLFHRCNKFFHIYAGRFAYLAGVVQCYRGLELVASDDQLIFSAGDG 379
[Close]
BLAST of mRNA_S-latissima_F_contig1076.649.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.390e-37
Identity = 65/90 (72.22%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    1 VFASGGNHTTSHAHWGYYMITAVFLQLFTGWMRTKGLEAKHANFSFLHRVNKHFHIWAGRFAYLAGVVQCYRGLELVASSDELVFSAGDG 270
            +FA GG H   HAHWGYYMI AV  Q+ +GW+R KGL  K+ANFS  HR NK FHI+AGRFAYLAGVVQCYRGLELVAS D+L+FSAGDG
Sbjct:  980 IFAPGGEHQHEHAHWGYYMIVAVVAQVLSGWLRVKGLGGKNANFSLFHRCNKFFHIYAGRFAYLAGVVQCYRGLELVASDDQLIFSAGDG 1069
[Close]
BLAST of mRNA_S-latissima_F_contig1076.649.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 6.570e-37
Identity = 65/90 (72.22%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    1 VFASGGNHTTSHAHWGYYMITAVFLQLFTGWMRTKGLEAKHANFSFLHRVNKHFHIWAGRFAYLAGVVQCYRGLELVASSDELVFSAGDG 270
            +FASG    T HAHWGYYMI AV  Q+ +GW+R KGL  K+ANFS  HR NK FHI+AGRFAYLAGVVQCYRGLELVAS D+L+FSAGDG
Sbjct:  807 IFASGSQRGTEHAHWGYYMIIAVMAQVLSGWLRVKGLGGKNANFSVFHRFNKFFHIYAGRFAYLAGVVQCYRGLELVASDDKLIFSAGDG 896
[Close]
BLAST of mRNA_S-latissima_F_contig1076.649.1 vs. uniprot
Match: D8LB74_ECTSI (Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB74_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 2.990e-21
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:   55 MITAVFLQLFTGWMRTKGLEAKHANFSFLHRVNKHFHIWAGRFAYLAGVVQCYRGLELVASSDELVFSAGD 267
            M+ A+ LQ+ TG+ R + LEAK  NFS  HRVNKHFHI AG FAY AG+VQCYRGLELV+ SD+L+FSA D
Sbjct:    1 MVGAIVLQIGTGFARVRALEAKSNNFSLFHRVNKHFHISAGWFAYAAGLVQCYRGLELVSGSDKLIFSAVD 71
[Close]
BLAST of mRNA_S-latissima_F_contig1076.649.1 vs. uniprot
Match: A0A6H5JX59_9PHAE (Cytochrome b5 heme-binding domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX59_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.100e-21
Identity = 48/89 (53.93%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:    1 VFASGGNHTTSHAHWGYYMITAVFLQLFTGWMRTKGLEAKHANFSFLHRVNKHFHIWAGRFAYLAGVVQCYRGLELVASSDELVFSAGD 267
            V  + G H + HA WG+               R + LEAK  NFS  HRVNKHFHIWAG FAY AG+VQCYRGLE V+ SD+L+FSA D
Sbjct:   51 VVTTSGLHNSEHAKWGF--------------ARVRALEAKSNNFSLFHRVNKHFHIWAGWFAYAAGLVQCYRGLEQVSGSDKLIFSAVD 125
[Close]
BLAST of mRNA_S-latissima_F_contig1076.649.1 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.670e-15
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:  151 NKHFHIWAGRFAYLAGVVQCYRGLELVASSDELVFSAGDG 270
            NKHFHIWAGRFAYLAGVVQCYRGLELV+S D LV SAGDG
Sbjct:  681 NKHFHIWAGRFAYLAGVVQCYRGLELVSSDDNLVLSAGDG 720
[Close]
BLAST of mRNA_S-latissima_F_contig1076.649.1 vs. uniprot
Match: A0A6H5JWZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ0_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.160e-9
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:  139 LHRVNKHFHIWAGRFAYLAGVVQCYRGLELVASSDELVF 255
            LH+ NK FHI+AGRFAYL GV+Q YRGLELVAS D+ VF
Sbjct:  474 LHKFNKFFHIYAGRFAYLTGVIQGYRGLELVASDDKPVF 512
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1076.649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G7J2_ECTSI1.180e-4381.11Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JQ31_9PHAE2.990e-4380.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7J1_ECTSI8.040e-4177.78Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7FX04_ECTSI5.440e-3872.22Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
A0A6H5JBL8_9PHAE1.390e-3772.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFE6_ECTSI6.570e-3772.22Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LB74_ECTSI2.990e-2166.20Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JX59_9PHAE4.100e-2153.93Cytochrome b5 heme-binding domain-containing prote... [more]
D7FQW8_ECTSI2.670e-1590.00Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JWZ0_9PHAE3.160e-974.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1076contigS-latissima_F_contig1076:148724..150715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue9.8e-37
Seed eggNOG ortholog2880.D7G7J2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peroxidase activity
EggNOG OGsKOG2408@1,KOG2408@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815457.3202946-CDS-S-latissima_F_contig1076:148723..1488461622815457.3202946-CDS-S-latissima_F_contig1076:148723..148846Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1076 148724..148846 -
1693924893.5882921-CDS-S-latissima_F_contig1076:148723..1488461693924893.5882921-CDS-S-latissima_F_contig1076:148723..148846Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1076 148724..148846 -
1622815457.3321736-CDS-S-latissima_F_contig1076:150568..1507151622815457.3321736-CDS-S-latissima_F_contig1076:150568..150715Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1076 150569..150715 -
1693924893.6019726-CDS-S-latissima_F_contig1076:150568..1507151693924893.6019726-CDS-S-latissima_F_contig1076:150568..150715Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1076 150569..150715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1076.649.1prot_S-latissima_F_contig1076.649.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1076 148724..150715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1076.649.1

>prot_S-latissima_F_contig1076.649.1 ID=prot_S-latissima_F_contig1076.649.1|Name=mRNA_S-latissima_F_contig1076.649.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=90bp
VFASGGNHTTSHAHWGYYMITAVFLQLFTGWMRTKGLEAKHANFSFLHRV
NKHFHIWAGRFAYLAGVVQCYRGLELVASSDELVFSAGDG
back to top

mRNA from alignment at S-latissima_F_contig1076:148724..150715-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1076.649.1 ID=mRNA_S-latissima_F_contig1076.649.1|Name=mRNA_S-latissima_F_contig1076.649.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=1992bp|location=Sequence derived from alignment at S-latissima_F_contig1076:148724..150715- (Saccharina latissima SLPER63f female)
GTCTTCGCTTCGGGCGGCAACCACACCACCAGCCACGCCCACTGGGGGTA
CTACATGATCACCGCCGTGTTTTTGCAGCTGTTCACCGGGTGGATGCGCA
CGAAAGGGCTGGAGGCCAAGCACGCAAACTTTTCATTTCTGCACAGGGTA
AGGAGGCCTGCCGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGCGTACTCATTTGTTGCTTGCCTTGGTCATTTGACCATTGACCATGCA
TCCCTCTCGAGACGGAGCACCGGGGGAGGGGGGGGGCGTACTCATTTGTT
GCTTGCCTTAGTCTTTTGACCATTGACCATGCATCCCTCTCGAGACGGAG
CACCGGGGGAGGGGGTGGACTCGGCGTGTCGAGTTAAAGGCGTTGGGGTC
CAAATAATGCGTATCTTAGGTTGATGTCCAGTCACTACGCACACGAGTAT
GATATGTATCTTAGTTTGGATGTTCGGGTAAATTTTCAATATGCGGCGAG
ACTACAAGGTTCAGTAGTTCCTCTTCGCTATGATGGAGTTGATTTTTCCC
ACGCTAGTTATAAATAGATAAATAGTTCGGTTGGAGCCCAAGCACGCCAA
GTTTTCATTTCTGCATAGGGCAGGAGGGCGGGAGGGAGGGGTACTCAACA
CCAAGTATCATGCATGGCCGTAGTCGTATGGTGATAGACCCTCGCATCCC
TACAATGCCGGGGCGGAGCACGCCGGATTTTCGCCGACCAGGCAATATCG
CTAGCACCAAGCGCGTAGCGAAACGTGAGGTATTCGGCAAGTCGCATGAA
GGGTGGGCTGCATCTTTACCATCAGGGACCGCTTGTGAGGCTTGTGAGGC
AGACCTTCTTGCATATGGATGACAGCGTCGAATGAGTGGGGAGGGGGGGT
ACTCTTGTCGTGCACGGCCGTGGTCGTATGACCATAGACCCTCGCATCCC
TACAATGCCGGAACGGGGCGGGGGTTGGGGTTGGTTATCCCGCACTAATA
ATAATTAAAAAAAAAACCTGGACGCCAAACAGGCCTATTCATATTTCCTT
CACAGGGTAAGGAGGCCGGGAAGGTGGGGGGACTGGGGTTGGTTATGCCG
CACTAATTCCAAGAAGTTTGGGCTGGAGGCCAAACAGGCTAATTTTGCTT
TCCAACACAGCGTGAAGAGGCCGGGAGGAGGGGGGGGGGCTCGTGTCGTG
CATGGCCGTAGTCGTATGACCATAGACCTGGAGTGGAGGCCAAACCCCCC
ACTGTAAACAACCCCCCCCCCCCATAGGGTACTGAAGGGGGGGGAGGGGG
GTAGATGTTGAGGGTTTCCGCAATGTGTGTGTGGACGGTGGGGCGGGGAC
ATTTGGTAGGGAGGGGTGTTTGGAATGGGGAACCGGGGCAAGATGGGGGA
GTTCTGCAAAATGTGGTTGAGGTGTGCGGTGGGGGGTTGCCGGGGATGAG
AACGGAGTAGAGGATTGCAGGCGGGGGGGGGGGTACTCATGTCATGCATG
GCCGTAGTCGCATGGGCGACCATAGACGGCGGAGGGGTGTTGCTGTGTTG
CAGCCGTGCACCTGCTCAGCGTATTATTATTTGCGGCGTGGGCCTGGTCG
TTGAGGCTGGCCCGCGTTCTTTTCTGCTCCTCGTATGACATGCACATTTC
GTACAGGGTCAGGGTTTTAGAAGTAGACTATTTTATGGGGGTCAGGGTTA
AAACCAACCCGCCTTTTGTCTCAGCTGGACCAAAATCGCACACACTACGT
ACGTACGTGACGCTTGAGACAAAGGAGTCTATCTCTCAATTAACTAAACC
CCAACCCTCTTGTTCTCTTTTTCTTTTGCGTGCAAAAACAAAACCAAAAA
CAAAAAAATACACTTGCAGGTCAATAAGCACTTCCACATCTGGGCTGGGC
GCTTCGCCTACCTGGCCGGAGTGGTGCAATGCTACCGTGGGCTCGAGCTC
GTCGCCAGCAGCGACGAGCTCGTCTTCTCGGCCGGGGATGGC
back to top

Coding sequence (CDS) from alignment at S-latissima_F_contig1076:148724..150715-

>mRNA_S-latissima_F_contig1076.649.1 ID=mRNA_S-latissima_F_contig1076.649.1|Name=mRNA_S-latissima_F_contig1076.649.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=540bp|location=Sequence derived from alignment at S-latissima_F_contig1076:148724..150715- (Saccharina latissima SLPER63f female)
GTCTTCGCTTCGGGCGGCAACCACACCACCAGCCACGCCCACTGGGGGTA
CTACATGATCACCGCCGTGTTTTTGCAGCTGTTCACCGGGTGGATGCGCA
CGAAAGGGCTGGAGGCCAAGCACGCAAACTTTTCATTTCTGCACAGGGTC
TTCGCTTCGGGCGGCAACCACACCACCAGCCACGCCCACTGGGGGTACTA
CATGATCACCGCCGTGTTTTTGCAGCTGTTCACCGGGTGGATGCGCACGA
AAGGGCTGGAGGCCAAGCACGCAAACTTTTCATTTCTGCACAGGGTCAAT
AAGCACTTCCACATCTGGGCTGGGCGCTTCGCCTACCTGGCCGGAGTGGT
GCAATGCTACCGTGGGCTCGAGCTCGTCGCCAGCAGCGACGAGCTCGTCT
TCTCGGCCGGGGATGGCGTCAATAAGCACTTCCACATCTGGGCTGGGCGC
TTCGCCTACCTGGCCGGAGTGGTGCAATGCTACCGTGGGCTCGAGCTCGT
CGCCAGCAGCGACGAGCTCGTCTTCTCGGCCGGGGATGGC
back to top