mRNA_S-latissima_F_contig1076.644.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1076.644.1
Unique NamemRNA_S-latissima_F_contig1076.644.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1076.644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1076contigS-latissima_F_contig1076:51098..51814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size525
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815456.3645196-CDS-S-latissima_F_contig1076:51097..513251622815456.3645196-CDS-S-latissima_F_contig1076:51097..51325Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1076 51098..51325 +
1693924892.6294951-CDS-S-latissima_F_contig1076:51097..513251693924892.6294951-CDS-S-latissima_F_contig1076:51097..51325Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1076 51098..51325 +
1622815456.3744638-CDS-S-latissima_F_contig1076:51519..518131622815456.3744638-CDS-S-latissima_F_contig1076:51519..51813Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1076 51520..51813 +
1693924893.1067963-CDS-S-latissima_F_contig1076:51519..518131693924893.1067963-CDS-S-latissima_F_contig1076:51519..51813Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1076 51520..51813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1076.644.1prot_S-latissima_F_contig1076.644.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1076 51098..51813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1076.644.1

>prot_S-latissima_F_contig1076.644.1 ID=prot_S-latissima_F_contig1076.644.1|Name=mRNA_S-latissima_F_contig1076.644.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=174bp
GAGEEDPLSVGAPDGNGMDRNGSGGDGGRESFDCEEAVILVEDEQGLGLD
ESPEMEEEGEARDVDFDHLPLLVTPTHREREFMENEVLTGVTPGTSHPGR
RVVADSGWRQGKPPPPSPAMAGLAAPLGGGIGGGGGVSGGVVNSAGVNGG
ARGTGRVGPIIGGGSLASSGLSSP
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mRNA from alignment at S-latissima_F_contig1076:51098..51814+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1076.644.1 ID=mRNA_S-latissima_F_contig1076.644.1|Name=mRNA_S-latissima_F_contig1076.644.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=717bp|location=Sequence derived from alignment at S-latissima_F_contig1076:51098..51814+ (Saccharina latissima SLPER63f female)
GGGGCAGGGGAAGAGGACCCGCTCTCGGTGGGAGCGCCGGATGGAAACGG
GATGGATCGGAACGGCAGCGGCGGCGACGGTGGTAGGGAGAGTTTCGATT
GCGAGGAGGCGGTAATTCTTGTGGAGGACGAGCAGGGGCTTGGGCTGGAC
GAGAGCCCGGAGATGGAGGAGGAGGGGGAAGCGCGGGACGTTGACTTTGA
CCACCTGCCGCTGCTGGTGACACCGACGGTGAGTGAAGTTCGATCGCGGG
GGGGAGAGAGCGGAGGAGGGGGGGGGGTCTTGCTGTCTTGTTTTTTTAGC
GAGGCCCAACACCACCATATTATTATGTTCTCATGGCCAACGCCCCCCTC
CCCCCATGTTTCTCACCCGCCCCCCGCGCCCGCGCCCGTATTCGTCACCG
CCTCCCTCTTTTTGAAACCCAGCACCGAGAGAGAGAGTTCATGGAGAACG
AGGTGCTGACGGGAGTAACACCAGGAACTTCTCACCCCGGTCGCCGTGTC
GTCGCCGACAGCGGCTGGCGTCAGGGAAAGCCCCCGCCGCCGTCGCCCGC
GATGGCGGGGCTGGCAGCTCCCCTAGGCGGCGGAATCGGCGGCGGCGGTG
GGGTTAGCGGTGGCGTTGTTAACAGCGCCGGCGTTAACGGTGGCGCACGC
GGTACCGGTCGAGTGGGACCCATTATCGGCGGTGGGTCTTTGGCCTCTTC
GGGGCTGTCGTCGCCGC
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Coding sequence (CDS) from alignment at S-latissima_F_contig1076:51098..51814+

>mRNA_S-latissima_F_contig1076.644.1 ID=mRNA_S-latissima_F_contig1076.644.1|Name=mRNA_S-latissima_F_contig1076.644.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1044bp|location=Sequence derived from alignment at S-latissima_F_contig1076:51098..51814+ (Saccharina latissima SLPER63f female)
GGGGCAGGGGAAGAGGACCCGCTCTCGGTGGGAGCGCCGGATGGAAACGG
GATGGATCGGAACGGCAGCGGCGGCGACGGTGGTAGGGAGAGTTTCGATT
GCGAGGAGGCGGTAATTCTTGTGGAGGACGAGCAGGGGCTTGGGCTGGAC
GAGAGCCCGGAGATGGAGGAGGAGGGGGAAGCGCGGGACGTTGACTTTGA
CCACCTGCCGCTGCTGGTGACACCGACGGGGGCAGGGGAAGAGGACCCGC
TCTCGGTGGGAGCGCCGGATGGAAACGGGATGGATCGGAACGGCAGCGGC
GGCGACGGTGGTAGGGAGAGTTTCGATTGCGAGGAGGCGGTAATTCTTGT
GGAGGACGAGCAGGGGCTTGGGCTGGACGAGAGCCCGGAGATGGAGGAGG
AGGGGGAAGCGCGGGACGTTGACTTTGACCACCTGCCGCTGCTGGTGACA
CCGACGCACCGAGAGAGAGAGTTCATGGAGAACGAGGTGCTGACGGGAGT
AACACCAGGAACTTCTCACCCCGGTCGCCGTGTCGTCGCCGACAGCGGCT
GGCGTCAGGGAAAGCCCCCGCCGCCGTCGCCCGCGATGGCGGGGCTGGCA
GCTCCCCTAGGCGGCGGAATCGGCGGCGGCGGTGGGGTTAGCGGTGGCGT
TGTTAACAGCGCCGGCGTTAACGGTGGCGCACGCGGTACCGGTCGAGTGG
GACCCATTATCGGCGGTGGGTCTTTGGCCTCTTCGGGGCTGTCGTCGCCG
CACCGAGAGAGAGAGTTCATGGAGAACGAGGTGCTGACGGGAGTAACACC
AGGAACTTCTCACCCCGGTCGCCGTGTCGTCGCCGACAGCGGCTGGCGTC
AGGGAAAGCCCCCGCCGCCGTCGCCCGCGATGGCGGGGCTGGCAGCTCCC
CTAGGCGGCGGAATCGGCGGCGGCGGTGGGGTTAGCGGTGGCGTTGTTAA
CAGCGCCGGCGTTAACGGTGGCGCACGCGGTACCGGTCGAGTGGGACCCA
TTATCGGCGGTGGGTCTTTGGCCTCTTCGGGGCTGTCGTCGCCG
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