mRNA_S-latissima_F_contig1076.642.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1076.642.1
Unique NamemRNA_S-latissima_F_contig1076.642.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1076.642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1076contigS-latissima_F_contig1076:49463..49779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815456.4967206-CDS-S-latissima_F_contig1076:49462..497771622815456.4967206-CDS-S-latissima_F_contig1076:49462..49777Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1076 49463..49777 +
1693924893.1388752-CDS-S-latissima_F_contig1076:49462..497771693924893.1388752-CDS-S-latissima_F_contig1076:49462..49777Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1076 49463..49777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1076.642.1prot_S-latissima_F_contig1076.642.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1076 49463..49777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1076.642.1

>prot_S-latissima_F_contig1076.642.1 ID=prot_S-latissima_F_contig1076.642.1|Name=mRNA_S-latissima_F_contig1076.642.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=105bp
EEEVEEARAQAMLAAAAAAVARGQGSPQGSPAWAPSTGYGSPPPTHRGDA
GAGVGSGGGGSGSGSGGPSRRSSSSGRSSSGRRLVPRGSKGRQGHTRTHT
RTQSG
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mRNA from alignment at S-latissima_F_contig1076:49463..49779+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1076.642.1 ID=mRNA_S-latissima_F_contig1076.642.1|Name=mRNA_S-latissima_F_contig1076.642.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=317bp|location=Sequence derived from alignment at S-latissima_F_contig1076:49463..49779+ (Saccharina latissima SLPER63f female)
GAGGAGGAGGTGGAGGAGGCGAGGGCACAGGCGATGTTAGCTGCGGCGGC
GGCAGCAGTGGCTAGGGGGCAAGGGTCGCCGCAAGGGTCGCCCGCGTGGG
CTCCGTCAACTGGCTATGGGTCTCCTCCACCGACGCATCGTGGGGATGCT
GGTGCCGGTGTTGGTAGCGGCGGAGGTGGCAGTGGCAGTGGCAGTGGCGG
GCCTTCGAGGCGGTCTTCCTCCTCCGGTAGGTCGAGCAGCGGTCGGCGCT
TGGTCCCGAGAGGGTCGAAGGGCAGGCAGGGGCACACGCGGACGCACACG
CGGACGCAGAGCGGGGG
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Coding sequence (CDS) from alignment at S-latissima_F_contig1076:49463..49779+

>mRNA_S-latissima_F_contig1076.642.1 ID=mRNA_S-latissima_F_contig1076.642.1|Name=mRNA_S-latissima_F_contig1076.642.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=630bp|location=Sequence derived from alignment at S-latissima_F_contig1076:49463..49779+ (Saccharina latissima SLPER63f female)
GAGGAGGAGGTGGAGGAGGCGAGGGCACAGGCGATGTTAGCTGCGGCGGC
GGCAGCAGTGGCTAGGGGGCAAGGGTCGCCGCAAGGGTCGCCCGCGTGGG
CTCCGTCAACTGGCTATGGGTCTCCTCCACCGACGCATCGTGGGGATGCT
GGTGCCGGTGTTGGTAGCGGCGGAGGTGGCAGTGGCAGTGGCAGTGGCGG
GCCTTCGAGGCGGTCTTCCTCCTCCGGTAGGTCGAGCAGCGGTCGGCGCT
TGGTCCCGAGAGGGTCGAAGGGCAGGCAGGGGCACACGCGGACGCACACG
CGGACGCAGAGCGGGGAGGAGGAGGTGGAGGAGGCGAGGGCACAGGCGAT
GTTAGCTGCGGCGGCGGCAGCAGTGGCTAGGGGGCAAGGGTCGCCGCAAG
GGTCGCCCGCGTGGGCTCCGTCAACTGGCTATGGGTCTCCTCCACCGACG
CATCGTGGGGATGCTGGTGCCGGTGTTGGTAGCGGCGGAGGTGGCAGTGG
CAGTGGCAGTGGCGGGCCTTCGAGGCGGTCTTCCTCCTCCGGTAGGTCGA
GCAGCGGTCGGCGCTTGGTCCCGAGAGGGTCGAAGGGCAGGCAGGGGCAC
ACGCGGACGCACACGCGGACGCAGAGCGGG
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