mRNA_S-latissima_F_contig1066.556.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1066.556.1
Unique NamemRNA_S-latissima_F_contig1066.556.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1066.556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1066contigS-latissima_F_contig1066:136799..143335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1021
Cds size534
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1066.556.1prot_S-latissima_F_contig1066.556.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1066 137286..143335 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815442.3954105-UTR-S-latissima_F_contig1066:136798..1372851622815442.3954105-UTR-S-latissima_F_contig1066:136798..137285Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1066 136799..137285 -
1693924886.252373-UTR-S-latissima_F_contig1066:136798..1372851693924886.252373-UTR-S-latissima_F_contig1066:136798..137285Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1066 136799..137285 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815442.410257-CDS-S-latissima_F_contig1066:137285..1373471622815442.410257-CDS-S-latissima_F_contig1066:137285..137347Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1066 137286..137347 -
1693924886.2666314-CDS-S-latissima_F_contig1066:137285..1373471693924886.2666314-CDS-S-latissima_F_contig1066:137285..137347Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1066 137286..137347 -
1622815442.420207-CDS-S-latissima_F_contig1066:137943..1382201622815442.420207-CDS-S-latissima_F_contig1066:137943..138220Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1066 137944..138220 -
1693924886.275182-CDS-S-latissima_F_contig1066:137943..1382201693924886.275182-CDS-S-latissima_F_contig1066:137943..138220Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1066 137944..138220 -
1622815442.4299653-CDS-S-latissima_F_contig1066:143140..1433351622815442.4299653-CDS-S-latissima_F_contig1066:143140..143335Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1066 143141..143335 -
1693924886.2830744-CDS-S-latissima_F_contig1066:143140..1433351693924886.2830744-CDS-S-latissima_F_contig1066:143140..143335Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1066 143141..143335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1066.556.1

>prot_S-latissima_F_contig1066.556.1 ID=prot_S-latissima_F_contig1066.556.1|Name=mRNA_S-latissima_F_contig1066.556.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=178bp
GDTCDAAHVLPREAAPGENIDEGGLTAGTTAPASLLLPSGAEPVAGGEGS
NRQEINDAVDLAATTVTKTTSSTSSAVGESDTAALSASVETASSSYDDDD
TGLVLTPVDFSEVSCVSAADDNAEGLLLPDTAVGAGVEVGGGDGETGSTT
ALSSSASGISASFCMPRPEMDPLALSA*
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mRNA from alignment at S-latissima_F_contig1066:136799..143335-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1066.556.1 ID=mRNA_S-latissima_F_contig1066.556.1|Name=mRNA_S-latissima_F_contig1066.556.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=6537bp|location=Sequence derived from alignment at S-latissima_F_contig1066:136799..143335- (Saccharina latissima SLPER63f female)
GGGGATACTTGCGATGCGGCGCACGTGCTACCGCGCGAGGCGGCGCCTGG
TGAGAATATCGATGAGGGGGGTCTCACCGCTGGAACGACCGCTCCCGCTA
GCTTACTCCTCCCGAGCGGGGCTGAACCGGTGGCGGGGGGGGAGGGCAGC
AACCGCCAGGAAATCAACGATGCTGTCGACTTGGCCGCCACGACGGTGAG
AATGATGAGAATCACGGGCTGCACGCAAACAGAGGATTGTTCGATCTTCG
GGTACCTCCATCACAAATGCATGGGTTCGAGTTCGATAGTGCTGATTGTA
CTAGACACAACAAAAACGAGACGGCGGAGGGGCGAATTAGAACGGCTGGG
GTAATTGTATCGAGGGCCGCTCTATGTTGTTGGTTCAATCAACGGTGAAC
AAAAGCATGGTTAGTTGTATGCGCTGTTGTGCTGGAAGGTGTTTCTGTGC
GAGCACGAATGCAGACCACAGCACAGCACCGTTGCGAAAGAACAAGCAGA
ACAACGGCTATTGCCGCTTACGGTCGGCCCAAACAAGTAAGCCTCGTGCA
AACCAGCCCATCATAACACCCAGCGTCACCTCTGTGACAACCAATAACAT
AGTATCAGCTCATTTCGATCCCCGGCACCGAAGCAGGTCACCAAGACAAC
GTCATCAACCTCGTCGGCGGTCGGCGAGTCAGACACCACGGCCCTATCAG
CGTCCGTGGAAACGGCGTCAAGTTCCCACGATGATGACGATTTCGGGCTA
GTTTTGACCCCCGCGGACTCCTCTGAAGTGAGTTGCGTCATTGCTGCCGA
CGACAACGTGGAGGGTCTCCTCTTACATGATACTGCCGCGGGGGCGGGGG
TGGAGGTCGGAGGCGGGCATGGGGAAACCGGAAGCACGACGGCGTTGCCG
CCGTCTGCATCAAGTGCGTTCGGGAGCCTTTCTGTTGTGCCCCTGCCATC
GGGGACGGATAGTCCTCCCGTTCTTTATCTGATGAAGCATATACCACCGC
GAAGGAGCATATCCCTGAGCTCGTCCCGTTTACTGAAGGGCTTGAACGAC
GTGTTTCTAGTTGTAGTGCTGAACGTAGATGCGTGATCTGATAGGGTAAA
TAATAGCACATTTTAACTGAACTATTTCGGACTGACTATTAGTATACTTG
TCAAGTAAGGAACCACCCGACATCGTTGAAAGCCCTTTTGTGATGTGAAG
TAAATTCGATATGCACCTTGGCCATGGGGTTGTATATCCGGTCAATAATT
TGGTATCTATTTATGCGAGGCAGGTTTAGGGTGGGGTATAGATCTCCTAT
ACTATAACCGTGAGAGGAGCCTCAGAAACTTCAGATAGGTGTCCCCCTAC
CGTGCCATGCGTCCGTACGCCCCCGCCGTGTGCGCGTGTGCTTCCGGGAA
AGGTAAGCGTGCATAGTCCCGATTGATCCGCATCATCGCGGTAGACCAAG
AGCTTACGTACATCCTACCACCGTGCCCATCTCCGACCAAACGTTCCCGC
CTCTTGTTGACAGGTATTTCTGCTTCATTCTGCATGCCTCGCCCCGAGAT
GGACCCGTTGGCTCTCTCTGAGTGAGAACGACCGTCGCTTTAGACTCTGC
GACGTTGCCAGAATTTCCGACAATCGGACTTGCAGGGTCCAACCCCAGTA
TTGATACTGCCCGTTGGCGACGGATACACAACAGGAAAGCACAGTAGAGA
GGCTGATGAGGCACCTTCGACAGCGACTACGCCACCTGCTGGCCAGGAAG
AAGCAGGACTGCGTGCCAACGGGGCTGTCGGAGATCAGTCGACGCTGTCG
GCGACCGCGCAACCGTTCCGGTCTTCATCCGACACGCCCTCTGCCGCGTC
GGTGGCGTTTGTTTCTTGGAGGGTGAACATGGTCAAAGTGTTGGCTGAGT
TGAAGATGAGAGTGGAGTCGACATATTGGAGTTCAGCCCTTGGTCTTCTG
TGGCCCGAGACAAGCTCCCCGACTCTCGTCGCCTTGTCCTTGGGATCCAC
GCCGTCGGTTGCTGCGACACCTGCCGCCTTGTCGACTCCACTCTCAGCTC
CACCTGAGACAAGGTTTTGACCATGTTCACCCTCCAAGGAATATGGTCGA
AATGTTCGCTCGGTTGGAGATGAGAGTGGAGTCGACAAATTGGAGTCCAG
CCCTTGATCTTCTGTGGCCCGAGACAACCTCCCCGACTCTCGACATCTTC
TCCTTGGGATCCACGCCGTCGGTTGCCGTGACACCTGCCGCCTTGTCGAC
TCCACTCTCGTCTTCACCTGAGACAAGGTTTTGACCATGTTAAGGAACAT
GGTCAAAGTGTTGGCTCGGTTGAGGATGAGGGCGGAGTCGACAAATTGGA
GTCCAGCCCTTGATCTTCTGTGGCCCGAGACAGCTTTCCCGACTCTCGTC
ACCTCCTCCTTGGGATCCACGCCGTCGGTTGCCGCGACACCTGCCGCCTT
GGCGACTCCACTCTCATCTTCACCTGAGACAATGCTTTGACCATGTTCAC
CCTCCAAGAAACAAACGCCGCTGACGCGGCCTCGGGCGTGTCACTAGAAG
GCCGGAACGATTGCGCGTTCGCTGACAATGTCGACTATTGGAGTCCAGCC
CTTGATCTCCTGTGGCTCGAGACAGCCTCCCCGACTCCCGTCACCTCCTC
CTTAGGGTTCATGCCGTCGGTTGCAGTGACACCTGCCGCCAACCAGGCGG
GAACCCCAACGAACGCGACGACGAGCGCGTCGACAATAGCTACGCTTCCT
GGGGGCTTATCCAGTCGGAATGGGATACAATCATGGCCCCGATCGTGGCT
CTGACGAAGGTGGAGACACTTGAGGGTGATGCCCTGAAGGTGAATGAGAA
GCGCGACGGATGCGAGCTGGATCACCCGTGCAAACCCCGCCTAGTTGCGG
CGGAAAAAATGTCAGCGACGGTGGCTCCCGCGCAACCACGCGGGGCAAAC
CGGCGGTCCCAGGCGGGTGCCTTGACGGAAGGTGTTTCGCTCTGGCGACT
GAGAAACGTGCCGTCTCGGTTTCACTTGAAACTGATTGAATCCTCGCAGG
CGTACCTCTCCAATACGTTGGCTGTTGCCGGAAACAATTGAAGGCTAGAT
TCTACCGACCACGACCTCCACGAAGCTTTGGACATGCTTGACGTCGACAA
CGATGCTGGCAGCGAGGATGCCAGGAGTGGGCGTGAAACTCAGCACATCA
GCGCTCAAGAACTCCTGGCAAACGCTCTCGAAGTGGGCGTGACTATCCCG
TTGCGGTCGACAGTAGTCTCTACATCGACCATAGGGACCACTTTCGACGG
TAACGGGTTAGTCATGCCCAATCTCACGAGCCTTATCTAAGCGATCCTGG
GCGCTGGTGTGCTGAGTTTTGTGCTCACGCCTGGCATCCTCGCTGCCAGT
CTCGTCGTCCAGCTTTAGCACGTCCGACGCTTTGGGGAGGCCGTGGTTTG
CAACATTTAGCCTCCGAATGTTGGCGACAGCAACCAACGGGTTGGCAAGG
TACGCCTGCGACGAATCGTGAGGTTTGAGGTGAGAAGCACAAAGCATGTT
GCTCAGACACCATCGCGCCACGTTGGAGGGGCCAGTAACGCATTGGAGAC
GTGTTGATAAACGCCAAGCGAGATAACAGGGAAACCGTCCTTGATTTGTT
TTCTGTACTACACGGAGTACTGGTACAAACGAAGGTATTGAAGGAGGGGT
GGTTAGAGGTTGGGAACCGAACCGATAATGACCCGTGCTTTGTTGTAAGA
GAGAAGGGGGCGTGTTGGTTCGTACTCTGAGCTTGTTTCAAGAGAAACGA
AGTATACCTCCACGGTAGACACTGTTTGATTGATCATGTGAGGGCAATGC
CAAGCGTGTACTACAGCCCGGGATGGTACTGACAGACTGGTAGAACACGC
GAACAGACATTGCCTATGCTATTTAGTAGCAATAGACAGTATTTGCCGGG
CCAGACATACCGTGGTTTCTCGTTTTTCTTGAGTTTCATCGCTGTTCGAC
CTAAACTTTGCAAATCGTTACCAATTGAACTCGATGACGCCACATTTTCT
GAGATATTTACAACCTATTTAGGCACAGGCTTGCCCAAATCAACACGTTT
ACAACCAGACTCCAACATTCTCTTCTCCTATTCGGGGGGACCAGTATGAG
ACGAAATATATGACAACCGAGTAGATATTACACTCAGCATTCTGGGGAAT
CAAAATAGGGCGTTCAGCTTGATCTAGGTTGTAGACATTCCTCGTATTAA
TATACTAGGCTGGCGAACAACCTACGTGCCCCGGTAGGAACGTATGAGTG
ATTATAGTTGCATCAGTAACCCAATCCAACCCCCATGCTCTCCACTCCAA
ACGATGCCCCTACCTTGCCTGAACGTTGGGTCAGGTCGAAATCTTCGAGT
TCTAACAGAGGTGCCACGGTTACTAGAGATGAGGGTTAAGCAGCAGCAGC
AGCAGCAGCGGATACTTGAGATGCGGTGCACGTGCTACCGCGCAAGGCGG
CGCCAGGTGGGAATATCGACGAGGGGTGTCGCACCACTAGCACGAGTGCT
CCCGCCAGCCTACGCCGGCCGAGCGGGGCTAACCCGGTTAAGGGGGGGAG
TAGCAACCGCCAGGAGGTCAACGGTGCTGTCGACTTGCCCGCCACAACGG
TGAGAACGGTGAGTATCACGGGCTGCACGCAAACAGAGCATCGTTCGTTT
ATCGCGTGCCTCCATCGCAAATGCGTGGGTTTGAGTTCGATAGTGCTGCT
TGTACTAGACACCAAAAAAACGAAAAGGCGGAGGGGCGAATTAGAACGGC
TGGGGATTATTGTATCGAGGGCCGCTCTATGTTGTTGGTTTAATACGCGC
TGAATAAACGCATAGTTAGGTTACGATGTTGTGCTGGAAGCTTTTCTGCG
CGAGCACGAATGCAGACCACAGCACAGCACCGTTGCGAAAGAATAAGCAG
AACAACGGCTCTTGCCGCTTACGATCGGCCCAAACCCGTAAACCTCGTGC
AAACCAGCCCATTATAACATCCAGCAGCGCAGGTGTAATTATTCTCGATC
CGGCACACCTCGGCGACAACCAATAACATACTATCAGCTCATTTCGATCC
CCGACACCGAAGCAGGTCACCAAGACAACGTCATCAACCTCGTCGGCGGT
CGGCGAGTCAGACACAGCGGCCCTATCAGCGTCCGTGGAAACGGCGTCAA
GTTCCTACGATGATGACGATACCGGGCTAGTTTTGACCCCCGTGGACTTC
TCTGAAGTGAGTTGCGTCAGTGCTGCCGACGACAACGCGGAAGGTCTCCT
TTTACCTGATACTGCCGTGGGGGCGGGGGTGGAGGTCGGAGGCGGGGATG
GGGAAACCGGAAGCACGACGGCGTTGTCGTCGTCTGCATCAGGTGCGTTC
GGGAACCTTTCTGCTGTGCCTTTGCTGGCGGGGACGGATAGCCCTCCCGT
TTTTATCTGATGAAGCATAGACCACCGCGAAGGAGCATGTCCCTGAGTCC
GTCCCGTTTACTAAAGGGCTTGAACGGCGTGTTTCTAGTTGTAGTGCTGA
ACGTAGATTTGGTAATGGAAATAATAGCGCATTTAAGTGAACTACAGTAG
TTCGGACTGACTATTACAGTAGTATACTTCTCAAGTAAAGAACCATCCGA
GATCGTTGAAAGCCCTATTGTGTTGTGCAGTGCATTCGATATGCACCTTG
GCCATGGGGTTGTTCATCCGGTCAATAATTTGGTATCTACTTTCTGAGAG
GCAGGTTTAGGGTGGGGCATAGAGCTCCTCTACTATAACCAAGTGAGAAG
CCTCAGAAACTTCAGGTAGGTGTCACCCTACCGTGTCATGCGTCCGTACG
CCCCCGCCGTGTGTGTGTGCTTCCGGAAAAGGTAAGCGTACGGAGTCCCG
CGTGGTCCGCATCATCACTGTAGACCAAGACCTGACACCCGACCACTGTG
TCCATCTCCCACCCAACGTGCCCGCCTCTTGTTGACAGGTATTTCTGCTT
CATTCTGCATGCCCCGCCCCGAGATGGACCCGTTGGCTCTCTCTGCGTGA
GAACGATCGTCGCTTTAGACTCTGCGACGTTGCCAGAAATACCGACAATC
AGACTTGCAGGGTCCAACCCCAGTATAGATACTGCCCGTTGGCGACGGAT
ACACAACAGGAAAGCACAGTAGAGAGGCTTACGAGGCACCTTCGACAGCG
ACTACGCCACCTGCTGGCCAGGAAAAAGCAGGACTGCGTGCCAACGGGGC
TGTCGGAGACCAGTCGACGCTGTCGGTGACCGCGCAACCGTTCCGGCCTT
CATCCGACACGCCCTCTGCCGCGTCGGCGGCGTTTGTTTCTTGGAGGGTG
AACATGGTCAAAGTGTTGGCTCAGTTGAAGATGAGAGCGGAGTCGACATA
TTGGAGTCCAGCCCTTGGTCTTCTGTGGCCCAAGACAGCCTCCCCCACTC
TCGTCGCCTTGTCCTTGGGGTCCACGCCGTCGGTTGCTGCGACACCTGCC
GCCTTGTCGACTCCACTCTGAGCTCCACCTGAGACAA
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Coding sequence (CDS) from alignment at S-latissima_F_contig1066:136799..143335-

>mRNA_S-latissima_F_contig1066.556.1 ID=mRNA_S-latissima_F_contig1066.556.1|Name=mRNA_S-latissima_F_contig1066.556.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1068bp|location=Sequence derived from alignment at S-latissima_F_contig1066:136799..143335- (Saccharina latissima SLPER63f female)
GGGGATACTTGCGATGCGGCGCACGTGCTACCGCGCGAGGCGGCGCCTGG
TGAGAATATCGATGAGGGGGGTCTCACCGCTGGAACGACCGCTCCCGCTA
GCTTACTCCTCCCGAGCGGGGCTGAACCGGTGGCGGGGGGGGAGGGCAGC
AACCGCCAGGAAATCAACGATGCTGTCGACTTGGCCGCCACGACGGGGGA
TACTTGCGATGCGGCGCACGTGCTACCGCGCGAGGCGGCGCCTGGTGAGA
ATATCGATGAGGGGGGTCTCACCGCTGGAACGACCGCTCCCGCTAGCTTA
CTCCTCCCGAGCGGGGCTGAACCGGTGGCGGGGGGGGAGGGCAGCAACCG
CCAGGAAATCAACGATGCTGTCGACTTGGCCGCCACGACGGTCACCAAGA
CAACGTCATCAACCTCGTCGGCGGTCGGCGAGTCAGACACAGCGGCCCTA
TCAGCGTCCGTGGAAACGGCGTCAAGTTCCTACGATGATGACGATACCGG
GCTAGTTTTGACCCCCGTGGACTTCTCTGAAGTGAGTTGCGTCAGTGCTG
CCGACGACAACGCGGAAGGTCTCCTTTTACCTGATACTGCCGTGGGGGCG
GGGGTGGAGGTCGGAGGCGGGGATGGGGAAACCGGAAGCACGACGGCGTT
GTCGTCGTCTGCATCAGGTCACCAAGACAACGTCATCAACCTCGTCGGCG
GTCGGCGAGTCAGACACAGCGGCCCTATCAGCGTCCGTGGAAACGGCGTC
AAGTTCCTACGATGATGACGATACCGGGCTAGTTTTGACCCCCGTGGACT
TCTCTGAAGTGAGTTGCGTCAGTGCTGCCGACGACAACGCGGAAGGTCTC
CTTTTACCTGATACTGCCGTGGGGGCGGGGGTGGAGGTCGGAGGCGGGGA
TGGGGAAACCGGAAGCACGACGGCGTTGTCGTCGTCTGCATCAGGTATTT
CTGCTTCATTCTGCATGCCCCGCCCCGAGATGGACCCGTTGGCTCTCTCT
GCGTGAGTATTTCTGCTTCATTCTGCATGCCCCGCCCCGAGATGGACCCG
TTGGCTCTCTCTGCGTGA
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