mRNA_S-latissima_F_contig1065.547.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig1065.547.1 vs. uniprot
Match: D8LNG2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG2_ECTSI) HSP 1 Score: 364 bits (934), Expect = 4.910e-114 Identity = 176/253 (69.57%), Postives = 199/253 (78.66%), Query Frame = 3
Query: 36 IAVCVPATSRGTVMESTDDSPVWTHAFQTFLSSMDWNAPKFRFHWYLGFDVGDPIYDAPLAFLTLERKFKTDALEEFRRQGVPDSALAGLRKDG-LTLHVKSYEGMEHAPSYVVSALIKDAYDDGCDYFYQINDDTNINSPDWASTFTGILLANPLGSNVGVTGPTDTNNRRILTHAFVHRTHIDVFGRYFPLAFKNWWSDDWISNVYGREHTLRDHPLTITHDVRSHKSDSNNRYTIDYDAQHALKSELRKG 791
IAVC+P TSRGT+M S DSPVWTHAF TFLSS D+ P+FRFHWY GFD GDPIYDA A L ++F A+EEFRRQG+ + + +DG L L K Y GMEHAPSYVVSAL++DAYDDGCDY YQINDDT IN+P WA FT L NPLG NVGVTGP DTNNRRILTHAFVHRTHID+FGR+FPL+FKNWWSDDWISNVYGREHTLRDH +TITHDVRS K D+ NRY +D A+ +L EL+ G
Sbjct: 342 IAVCIPMTSRGTLMNSPYDSPVWTHAFSTFLSSTDFGHPRFRFHWYFGFDAGDPIYDAAGAAAHLHKQFGKLAIEEFRRQGLTANDVEHRWRDGSLRLKAKHYLGMEHAPSYVVSALMQDAYDDGCDYLYQINDDTLINTPGWAEVFTSALRDNPLGRNVGVTGPADTNNRRILTHAFVHRTHIDIFGRFFPLSFKNWWSDDWISNVYGREHTLRDHAVTITHDVRSQKEDAPNRYDVDTSAERSLLKELKIG 594
BLAST of mRNA_S-latissima_F_contig1065.547.1 vs. uniprot
Match: A0A7S0SZW8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZW8_9STRA) HSP 1 Score: 273 bits (698), Expect = 9.450e-80 Identity = 130/296 (43.92%), Postives = 184/296 (62.16%), Query Frame = 3
Query: 36 IAVCVPATSRGTVMESTDDSPVWTHAFQTFLSSMDWNAPKFRFHWYLGFDVGDPIYDAPLAFLTLERKFKTDALEEFRRQGVPDSALAGLRKDGLTLHVKSYEGMEHAPSYVVSALIKDAYDDGCDYFYQINDDTNINSPDWASTFTGILLANPLGSNVGVTGPTDTNNRRILTHAFVHRTHIDVFGRYFPLAFKNWWSDDWISNVYGREHTLRDHPLTITHDVRSHKSDSNNRYTIDYDAQHALKSELRKGHVQLSKWLKANRLPPPMLPMVCGYAPLASDILTLIQERWDVDHP 923
I + VP TS+GTVM+ +SP WT+ F TF+ S+DW++ ++ + +YLGFD GD +YD ++ + +F A+ Q + ++ + + L++ + ++ ++ AP+ VVS L+ AY D DYFYQ+NDDT I +P+W L +NP N GVTGPTDTNN +ILTH+FVHRTHI+VFG FP FKNWWSDDWI+ VYG EHT + I H+V S K RY +D AQ L+ EL +GHVQ+ +WLK N LP LP +CGY PL + ++ + + P
Sbjct: 267 ICIAVPMTSKGTVMKDVTESPFWTNLFDTFMKSVDWHSNRYIYRFYLGFDRGDNLYDVGDSWQNIREEFSHRAIYRMTEQMLDENEIKNVLDKQLSIKLLDFDHLQGAPTQVVSQLVLTAYVDNFDYFYQVNDDTMIVTPNWVPKLVEKLASNPSIPNFGVTGPTDTNNEKILTHSFVHRTHIEVFGHLFPPYFKNWWSDDWITTVYGSEHTFLCPDVQIKHNVESQKQHGFTRYDVDQSAQLKLEEELMRGHVQIDEWLKKNSLPRLPLPNICGYIPLTRHLSKILTSKKHLSKP 562
BLAST of mRNA_S-latissima_F_contig1065.547.1 vs. uniprot
Match: A0A7S2MG38_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MG38_9STRA) HSP 1 Score: 254 bits (648), Expect = 3.220e-76 Identity = 127/260 (48.85%), Postives = 166/260 (63.85%), Query Frame = 3
Query: 18 GGQVPIIAVCVPATSRGTVMESTDDSPVWTHAFQTFLSSMDWNAPKFRFHWYLGFDVGDPIYDAPLAFLTLERKFKTDALEEFRRQGVPDSALAGLRKDGLTLHVKSYEGMEHAPSYVVSALIKDAYDDGCDYFYQINDDTNINSPDWASTFTGILLANPLGSNVGVTGPTDTNNRRILTHAFVHRTHIDVFGRYFPLAFKNWWSDDWISNVYGREHTLRDHPLTITHDVRSHKSDSNNRYTIDYDAQHALKSELRKGHV 797
GG +A+CVP TS+GT M + D SP W + F +F+ S+DW + F +YLGFD GDP+YD A+ + R F + P++ A + K GL LH+ ++ + +PS VV L AY DG DY +Q+NDDT I S DWA +F L +N + N+GVTGP DTNN RILTHAFVHRTH+DVFG +FP AFKNWWSDDWIS VYG HT R + +TH+V+S K+ + NRY +D AQ+ L+ EL G V
Sbjct: 6 GGGKTKVALCVPMTSKGTDMVTVDQSPFWFNLFASFMESIDWEKNEIEFSFYLGFDRGDPLYDTGDAWGEIRRTFGKNTRRALTWLNTPNATQAKVLKQGLILHLMDFDLPKGSPSQVVVGLANAAYKDGIDYMFQVNDDTVIVSHDWAKSFIRALESNTIHPNLGVTGPVDTNNDRILTHAFVHRTHLDVFGHFFPPAFKNWWSDDWISTVYGSLHTFRMPDVLVTHNVQSQKTGAFNRYEVDSSAQYNLRRELALGFV 265
BLAST of mRNA_S-latissima_F_contig1065.547.1 vs. uniprot
Match: A0A6V1PYQ3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PYQ3_HETAK) HSP 1 Score: 258 bits (658), Expect = 4.570e-75 Identity = 130/289 (44.98%), Postives = 180/289 (62.28%), Query Frame = 3
Query: 24 QVPIIAVCVPATSRGTVMESTDDSPVWTHAFQTFLSSMDWNAPKFRFHWYLGFDVGDPIYDAPLAFLTLERKFKTDALEEFRRQ-GVPDSALAGLRKDGLTLHVKSYEGMEHAPSYVVSALIKDAYDDGCDYFYQINDDTNINSPDWASTFTGILLANPLGSNVGVTGPTDTNNRRILTHAFVHRTHIDVFGRYFPLAFKNWWSDDWISNVYGREHTLRDHPLTITHDVRSHKSDSNNRYTIDYDAQHALKSELRKGHVQLSKWLKANRLPPPMLPMVCGYAPLASDIL 887
Q IA+ +P TS+GT M S +SP W + FQTF S+DW A + +F +++GFD GDPIYD ++ ++FK++A Q G+ + + + L + + + + APS VV+ L AYD G DY YQINDDT I + W F L +NP+ N GVTGPTD+ N +I THAFVHRTHI+ G +FP FKNWWSDDWIS VYG +HT R + ITH+V + K+ NRY IDY AQ+ L+ E+R+G V L+++L+ P LP VCG++P D++
Sbjct: 104 QTASIAIIIPMTSKGTEMTSVKESPFWFNTFQTFCYSIDWAANRNKFTFFIGFDKGDPIYDLGDSWNDFRKEFKSNAGMGISWQTGMSPEKVTNILETQLAVELHDFGDLAGAPSQVVNRLAGLAYDAGFDYIYQINDDTEIETKQWHLKFMKALASNPVFPNFGVTGPTDSLNPKIFTHAFVHRTHIEAIGSFFPSTFKNWWSDDWISTVYGEKHTFRHADVQITHNVEAQKTSGWNRYDIDYSAQYFLEKEIRQGFVTLNRFLRGRGAPGLPLPDVCGFSPAVGDLV 392
BLAST of mRNA_S-latissima_F_contig1065.547.1 vs. uniprot
Match: A0A7S3HK59_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HK59_9STRA) HSP 1 Score: 226 bits (577), Expect = 3.700e-66 Identity = 112/232 (48.28%), Postives = 149/232 (64.22%), Query Frame = 3
Query: 228 LERKFKTDALEEFRRQGVPDSALAGLRKDGLTLHVKSYEGMEHAPSYVVSALIKDAYDDGCDYFYQINDDTNINSPDWASTFTGILLANPLGSNVGVTGPTDTNNRRILTHAFVHRTHIDVFGRYFPLAFKNWWSDDWISNVYGREHTLRDHPLTITHDVRSHKSDSNNRYTIDYDAQHALKSELRKGHVQLSKWLKANRLPPPMLPMVCGYAPLASDILTLIQERWDVDHP 923
L +F+ A Q + ++ + + ++ L+L + ++ +E APS VVS L+ AY D DYFYQ+NDDT I SP+WA L +NP N GVTGP+D+NN +I TH+FVHRTHI+VFG FP FKNWWSDDWIS VYG EHT R +TI H+V + K+ S RY +D AQ L ELRKGHVQ+ +WLK N+LP LP++CGY PL + + +Q R + P
Sbjct: 4 LREEFRHRATYRMLEQLMEEADINAVLEEKLSLKLMHFDHLEGAPSQVVSQLMLSAYMDNFDYFYQVNDDTIITSPNWAPKLVAALASNPSIPNFGVTGPSDSNNEKIFTHSFVHRTHIEVFGHLFPPFFKNWWSDDWISTVYGVEHTFRCEDVTIKHNVNAQKTSSLTRYNVDQSAQVQLDKELRKGHVQVDEWLKKNKLPRLSLPVICGYIPLVTYLAKGLQARTAEEIP 235
BLAST of mRNA_S-latissima_F_contig1065.547.1 vs. uniprot
Match: A0A812U7Y0_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U7Y0_SYMMI) HSP 1 Score: 202 bits (514), Expect = 4.620e-57 Identity = 102/220 (46.36%), Postives = 137/220 (62.27%), Query Frame = 3
Query: 216 AFLTLERKFKTDALEEFRRQGVPDSALAGLRKDGLTLHVKSYEGMEHAPSYVVSALIKDAYDDGCDYFYQINDDTNINSPDWASTFTGILLANPLGSNVGVTGPTDTNNRRILTHAFVHRTHIDVFGRYFPLAFKNWWSDDWISNVYGREHTLR-DHPLTITHDVRSHKSDSNNRYTIDYDAQHALKSELRKGHVQLSKWLKANRLPPPMLPMVCGYAPL 872
A+ + FK A + Q + D+ + + ++ L L + ++ ++ APS VVS L+ Y D DYFYQ+NDDT I +P+WA F L NPL NVGVTGP+DT+NR+I TH+FVHRTH ++FG FP AFKNWWSDDWIS VYG+ HT R + I H V + K+ RY++D A+ L+ EL KG V + KWL P LP++CGY PL
Sbjct: 2 AWNDMREYFKKRAALRLKDQLIEDNEIEEILQNQLILKLSDFDHLQGAPSQVVSQLMLKGYSDNYDYFYQVNDDTQIVTPNWAPIFVKALQDNPLAPNVGVTGPSDTHNRQIFTHSFVHRTHFEIFGYLFPPAFKNWWSDDWISLVYGQSHTFRLGDSVQIQHMVGAQKTSGETRYSVDEGAKLILERELMKGFVTIDKWLAKQSYPRLPLPVLCGYIPL 221
BLAST of mRNA_S-latissima_F_contig1065.547.1 vs. uniprot
Match: A0A7S2CTF8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTF8_9STRA) HSP 1 Score: 199 bits (505), Expect = 3.850e-54 Identity = 115/312 (36.86%), Postives = 165/312 (52.88%), Query Frame = 3
Query: 33 IIAVCVPATSRGTVMESTDDSPVWTHAFQTFLSSMDWN------APKFRFHWYLGFDVGDPIYDAPLAFLTLERKFKTDALEEFRRQGVPDSALAGLRKDGLTLHVKSYEGMEHAPSYVVSALIKDAYDDGCDYFYQINDDTNINSPDWASTFTGILLANPLGSNVGVTGPTDTNNRRILTHAFVHRTHIDVFGRYFPLAFKNWWSDDWISNVYGREHTLRDHPLTITHDVRSHKSDSNNRYTIDYDAQHALKSELRKGHVQLSKWLKANRLPPPMLPM--VCGYAPLASDILTLIQERWDVDHPPSSKDSG 944
IIAV TS+GT M SP +T +FL + N + +FR+ +Y+G D GD +YD+ A F + R G D +D + L + S EG APS+ V+AL+K AYDDG D+ +Q+NDD + + W TG L +N + +GVTGPTD N RI TH FVHRTH+++ G +FP AF+N++SDDWIS VYG T R + + H+ + K+ RY D A+ AL ++ G ++ +WL+ P P+ VCG+ PLA + + R + PS D G
Sbjct: 53 IIAVGTAVTSKGTRMSDVTQSPFFTILLPSFLETFSPNTISHDGSSRFRYRFYVGCDAGDKLYDSEAARKKFSELF-VRRVGHHRTNGFDDGVSKDDSEDLIGLRLMSLEGTSGAPSWAVAALMKRAYDDGADWLFQLNDDARLLTLGWELRLTGALASNQVTRLLGVTGPTDLTNPRIFTHVFVHRTHLEIHGSFFPPAFRNYYSDDWISAVYGTSSTFRLPDVKMKHETKKQKTGKIERYKPDMSARKALGKQVEDGTKRVLRWLRVRGQDPLRFPLDSVCGFVPLAG--YSYVISRSSNESLPSENDGG 361
BLAST of mRNA_S-latissima_F_contig1065.547.1 vs. uniprot
Match: A0A7S2XZB2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZB2_9STRA) HSP 1 Score: 162 bits (411), Expect = 5.730e-43 Identity = 78/153 (50.98%), Postives = 102/153 (66.67%), Query Frame = 3
Query: 438 TNINSPDWASTFTGILLANPLGSNVGVTGPTDTNNRRILTHAFVHRTHIDVF-GRYFPLAFKNWWSDDWISNVYGREHTLRDHPLTITHDVRSHKSDSNNRYTIDYDAQHALKSELRKGHVQLSKWLKANRLPPPMLPMVCGYAPLASDILTL 893
T I + WA +L +NP+ N GVTGPTDT N +I TH+FVHRTH++VF G YFP FKNWWSDDWIS VYGR HT R + +TH+V++ K+ S RY IDY AQ L+ ELR+G V +S++L+ LP LP +C Y+P D++
Sbjct: 1 TEIVTKYWADRLIQVLASNPILPNFGVTGPTDTLNPKIFTHSFVHRTHLEVFQGAYFPEGFKNWWSDDWISTVYGRRHTFRQQDVKVTHNVKAQKTGSWERYEIDYTAQWILEKELRQGFVTVSRYLRQKGLPGLPLPSICSYSPGIEDMVAF 153
BLAST of mRNA_S-latissima_F_contig1065.547.1 vs. uniprot
Match: A0A2V7I8E0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7I8E0_9BACT) HSP 1 Score: 154 bits (389), Expect = 2.680e-39 Identity = 93/252 (36.90%), Postives = 133/252 (52.78%), Query Frame = 3
Query: 72 VMESTDDSPVWTHAFQTFLSSMDWNAPKFRFHWYLGFDVGDPIYDAPLAFLTLERKFKTDALEEFRRQGVPDSALAGLRKDGLTLHVKSYEGMEHAPSYVVSALIKDAYDDGCDYFYQINDDTNINSPDWASTFTGILLANPLGSNVGVTGPTDTNNRRILTHAFVHRTHIDVFGRYFPLAFKNWWSDDWISNVYGREHTLRDHPLTITHDVRSHKSDSNNRYTIDYDAQHALKSELRKGHVQLSKWLKANR 827
++ S +D F +FL + W+ + R+ Y+G+D GD YD P L L A +R + +P + L V+ G HAP V +AL + A DDG D+FYQ+ DD + + WA+ F +L + VGVTGP D NN R+LT +FV RTH+++FG YFP AF+NWWSDDWI+ VY +H LR P ++ + RY +DY L E+ G L++WL+A R
Sbjct: 1 MLRSVNDCDFLRKLFPSFLRTATWDG-RTRYRLYMGYDRGDRFYDRPARLLALR------AAVAWRSRSLP-----------VGLVVECCTGTTHAPCAVWNALFRRACDDGADFFYQLGDDVVLETVGWATAFPLVLETM---AGVGVTGPLDRNNPRLLTQSFVSRTHMEIFGAYFPGAFRNWWSDDWITEVYQPDH-LRPIPSQTVNNAGTGV-----RYEVDYAGAALLPREVAAGREVLARWLRARR 225
BLAST of mRNA_S-latissima_F_contig1065.547.1 vs. uniprot
Match: A0A7S2SID6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SID6_9STRA) HSP 1 Score: 145 bits (366), Expect = 1.240e-36 Identity = 69/174 (39.66%), Postives = 108/174 (62.07%), Query Frame = 3
Query: 357 APSYVVSALIKDAYDDGCDYFYQINDDTNINSPDWASTFTGILLANPLGSNVGVTGPTDTNNRRILTHAFVHRTHIDVFGRYFPLAFKNWWSDDWISNVYGREHTLRDHPLTITHDVRSHKSDSNNRYTIDYDAQHALKSELRKGHVQLSKWLKANRLPPPMLPM--VCGYAPL 872
APS+ VS L+ AY DG ++ +Q+NDD + + W +L +NP+ +G TGP D +N+RI TH F HRTH+D+ R+FP AFKN++SDDWI++VYG T + + +TH ++ K + RY D++A+ +L +E+ G +++ WL + L P+ VCGY P+
Sbjct: 2 APSWAVSNLMDQAYRDGAEWLFQLNDDAKLETQRWERALASVLASNPIHPFLGATGPVDASNKRIFTHVFTHRTHMDIHKRFFPKAFKNYFSDDWITSVYGAASTFKLPTVRMTHQTKAQKKGAIERYHPDHNARRSLGTEVHSGALRIVHWLNST-LDGGKWPVHAVCGYTPI 174 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1065.547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1065.547.1 >prot_S-latissima_F_contig1065.547.1 ID=prot_S-latissima_F_contig1065.547.1|Name=mRNA_S-latissima_F_contig1065.547.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=325bp MESTDDSPVWTHAFQTFLSSMDWNAPKFRFHWYLGFDVGDPIYDAPLAFLback to top mRNA from alignment at S-latissima_F_contig1065:130816..140193- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig1065.547.1 ID=mRNA_S-latissima_F_contig1065.547.1|Name=mRNA_S-latissima_F_contig1065.547.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=9378bp|location=Sequence derived from alignment at S-latissima_F_contig1065:130816..140193- (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig1065:130816..140193- >mRNA_S-latissima_F_contig1065.547.1 ID=mRNA_S-latissima_F_contig1065.547.1|Name=mRNA_S-latissima_F_contig1065.547.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1950bp|location=Sequence derived from alignment at S-latissima_F_contig1065:130816..140193- (Saccharina latissima SLPER63f female)back to top |