mRNA_S-latissima_F_contig1063.538.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig1063.538.1 vs. uniprot
Match: D7FUL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL1_ECTSI) HSP 1 Score: 442 bits (1138), Expect = 4.400e-134 Identity = 219/322 (68.01%), Postives = 260/322 (80.75%), Query Frame = 1
Query: 22 INVALHAQGNYAMHGWVAGSEVTTAGLQRAFQALSVVDRCEVFAPYSYEGLSDRTWDLVLVEGYMGSVPAFIHEVRASNREVVVLFYYLDTYPSLWVTGKLDVDAFLTNSRVLLPHLQKASIAPMAPASRLLHLAADPLVMWQVPPHPAYGHNVVYLGQFAPTKHRIVETLREVAPLGLSIYGVGWDRHEDAAELLPFWRGVLPLGDIASLYASAKVVLSTTEKYQRSLGMVNNRVFEALSCGAAVVTDGFPEMEALFGDHVLYYREAGDAKRAVEFLLENDTARAEMSRRGPPFVSSKHTYAARVPSVLSAMESVLALRNR 987
+NVALHAQ NYA+HGWVAGSE+TT+GL+RAF AL V CE+FAP+SY+G+S R WDLV++EGY GSVPAFIHEVRA N +VVVLFY LDTYPSL V G LDVDAFLTNS LLP L++ +APAS L+HLAADP VM P P Y HNVVYLGQF TKHR+VETL+EVAP GL+IYG GW E A ELLPFWRG+LPLGD+A+LY SAKVV++TTE QRSLGMVNNRVFEALSCG AVV+D FP E +FGDHV +YR+ GDA RAV+ LL NDTAR ++ RRG V SKHT+A+RV ++LS+++ V+AL+N+
Sbjct: 31 VNVALHAQSNYAVHGWVAGSEITTSGLRRAFAALPCVRSCEIFAPFSYDGVSSRKWDLVIIEGYTGSVPAFIHEVRAGNDDVVVLFYCLDTYPSLSVVGNLDVDAFLTNSLALLPFLRQ-----IAPASSLVHLAADPSVMQAAPFRPEYAHNVVYLGQFKGTKHRLVETLKEVAPYGLAIYGNGWSGVEGAEELLPFWRGILPLGDVAALYTSAKVVIATTETLQRSLGMVNNRVFEALSCGTAVVSDAFPAAEEMFGDHVHFYRQPGDAARAVKHLLGNDTARTDLGRRGRELVLSKHTFASRVVTILSSVDEVVALKNQ 347
BLAST of mRNA_S-latissima_F_contig1063.538.1 vs. uniprot
Match: F0YNI7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNI7_AURAN) HSP 1 Score: 204 bits (518), Expect = 2.640e-50 Identity = 139/357 (38.94%), Postives = 186/357 (52.10%), Query Frame = 1
Query: 7 AATHTINVALHAQGNYAMHGWVAGSEVTTAGLQRAFQALSVVDRCEVFAPYSYEGLSDRTWDLVLVEGYMGSVPAFIHEVRASNREVVVLFYYLDTYPSLWVTGKLDVDAFLTNSRVLLPH----------LQKA--SIAPMAPASRLLHLAADPLVMWQVPPHPAYGHN----VVYLGQFAPTKHRIVETL----REVAPLGLSIYGVGWDR-----HEDAAELLPFWRGVLPLGDIASLYASAKVVLSTTEKYQRSLGMVNNRVFEALSCGAAVVT-------DGFPEMEALFGDH--VLYYREAG--------DAKRAVEFLLENDTARAEMSRRGPPFVSSKHTYAARVPSVL 951
AA + +ALHAQ ++HGWVAGSEVTT GL+RA V E+ AP++YE + R WD++LVEG+ G V + VR + VV++ + LDTYPSL +D D FLTNSR+L LQ A A +AP LA DP M + +N VVYLGQ + K + L R V+ L+IYG WDR ++ A + W+G LP +IA LY+ A VVL TT+ QR LGMVNNRVFEAL+CG + DGFPE++A+ H V+Y + A+RA ++ ND A A ++ +HTY AR +L
Sbjct: 131 AAKDGLAIALHAQSKSSLHGWVAGSEVTTRGLRRALLRRGDVAFVEILAPFAYEAATSRLWDILLVEGFSGPVATLVRIVRRLHGNVVIIHWCLDTYPSLPTIAAIDADGFLTNSRLLAARGFEVAGGALDLQSAWFPTADLAPRG-FAALAVDPDEMSSDSAFVSETNNAKNLVVYLGQPSQGKKMLANVLMSIHRNVSGARLAIYGTAWDRFALWDNDHAILVACCWQGALPSDEIARLYSEASVVLGTTDSSQRRLGMVNNRVFEALACGGGRLISVEEQGEDGFPELQAMLRGHGDVVYSATSAAAAVASLLTAQRATPMVIRNDAAAAR------EHITDRHTYDARAAGIL 480
BLAST of mRNA_S-latissima_F_contig1063.538.1 vs. uniprot
Match: A0A7S4EAD6_9STRA (Hypothetical protein n=5 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAD6_9STRA) HSP 1 Score: 194 bits (494), Expect = 1.330e-47 Identity = 135/352 (38.35%), Postives = 185/352 (52.56%), Query Frame = 1
Query: 22 INVALHAQGNYAMHGWVAGSEVTTAGLQRAFQALSVVDRCEVFAPYSYEGLSDRTWDLVLVEGYMGSVPAFIHEVRASNREVVVLFYYLDTYPSLWVTGKLDVDAFLTNSRVLLPH----------------LQKASIAPMAPASRLLHLAADPLVMWQVPPHPAYGHN------VVYLGQFAPTKHRIVETLR---EVAPLGLSIYGVGWD----RHEDAAELLPF-WRGVLPLGDIASLYASAKVVLSTTEKYQRSLGMVNNRVFEALSC-GAAVVT------DGFPEMEALFGDHVLYYREAGDAKRAVEFLL----ENDTARAEMSRRGPPFVSSKHTYAARVPSVLS 954
+ +ALHAQ ++HGWVAGSEVTT GL+RAF + V E+FAP+ YEG++ + WD++LVEG+ G V + I +R N+++ V + LDTYP+L +DVD+FLTNSR+L H KA++AP + LA D M PP A H VVYLGQ + +K + +TL +V + L IYG WD + +D A L W+G LP G IA LYA+A V+L TT+ QR LGMVNNRVFEAL+C G V D F E+ H + D +A+ LL + T ++ + HTY R +L+
Sbjct: 26 LKIALHAQSKSSLHGWVAGSEVTTRGLRRAFLKRADVSIVEIFAPFCYEGIAHQ-WDMLLVEGFSGPVQSVIRGMRRFNKQIAVFHWCLDTYPTLASVAAIDVDSFLTNSRLLALHGFTMAGGNVLGLASPWFHKANLAPR----EFVALAVDTREM--KPPSDARAHPSSNDTVVVYLGQPSYSKALLAKTLLALYDVPGVRLKIYGSAWDHFSLQDKDYARLAACCWQGRLPSGSIARLYANATVILGTTDSSQRRLGMVNNRVFEALACSGGQFVAVEERGVDFFSELRGAIRSHGVVTYATTDGIKAITDLLVAYHPSSTLLRRVAAKARAHAIRHHTYDTRAAIILN 370
BLAST of mRNA_S-latissima_F_contig1063.538.1 vs. uniprot
Match: W4HCZ1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HCZ1_9STRA) HSP 1 Score: 190 bits (482), Expect = 3.510e-46 Identity = 119/316 (37.66%), Postives = 174/316 (55.06%), Query Frame = 1
Query: 22 INVALHAQGNYAMHGWVAGSEVTTAGLQRAFQALSVVDRCEVFAPYSYEGLSDRTWDLVLVEGYMGSVPAFIHEVRA-SNREVVVLFYYLDT-YPSLWVTGKLDVDAFLTNSRVLLPHLQKASIAPMAPASRLLHLAADPLVMWQVPPHP-AYGHNVVYLGQFA--PTKHRIVETLREVAPLGLSIYGVGWDRHEDAAELLPFWRGVLPLGDIASLYASAKVVLSTTEKYQRSLGMVNNRVFEALSCGAAVVTDGFPEMEALFGDHVLYYREAGDAKRAVEFLLENDTARAEMSRRGPPFVSSKHTYAARVPSVLS 954
+ VALH+Q + + +V GSE+T GL +AF+ + ++ P +Y ++D WD+V +EG+ ++ AFIHE+R S+ + F+ LD +P L +LDVDAF TNS L L+ P AP + + LAA+ P P + VV++G TK + LRE P GL+IYG WD + E P+W G+LP D+ +Y+SA+VVL T QR GM+NNRVFE L+ G+ ++ D + +EAL GDH+LYY + GD R + L + E+ FV S HTY RV V++
Sbjct: 47 LRVALHSQAHSSSDSFVVGSEMTCRGLGKAFKDQGHM--VQIMFPGNYSSIADNAWDIVFIEGWFPAIAAFIHEIRRLSHGRAKIYFFCLDPDFPGLDTIQQLDVDAFFTNSHEALELLK-----PHAPHTEFMLLAAESPS--NTAPRPVSTASTVVFVGNAIGISTKRDLTTMLREAIPFGLTIYGYAWDLVQ---EFTPYWGGILPPEDLPRVYSSARVVLGATMDGQRRSGMINNRVFEVLAAGSILINDHYGALEALLGDHILYYTKPGDVTRHMRQLSAFPYSPFELQA----FVRSAHTYDHRVRQVVA 346
BLAST of mRNA_S-latissima_F_contig1063.538.1 vs. uniprot
Match: A0A7S3K3S3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3S3_9STRA) HSP 1 Score: 170 bits (430), Expect = 7.900e-40 Identity = 124/354 (35.03%), Postives = 170/354 (48.02%), Query Frame = 1
Query: 10 ATHTINVALHAQGNYAMHGWVAGSEVTTAGLQRAFQALSVVDRCEVFAPYSYEGLSDRTWDLVLVEGYMGSVPAFIHEVRASNREVVVLFYYLDTYPSLWVTGKLDVDAFLTNSRVLL--------------PHLQKASIAPMAPASRLLHLAADPLVMWQVPPHPAYGHN-VVYLGQFAPTKHRIVE---TLREVAPLGLSIYGVGWDRHEDAAE-----LLPFWRGVLPLGDIASLYASAKVVLSTTEKYQRSLGMVNNRVFEALSCGAAVVT---------DGFPEMEALF--GDHVLYYREAGDAKRAVEFLLENDTARAEMSRRGPPFVSSKHTYAARVPSVLSAMESV 969
A+ +++ALHAQ +HGWVAGSE+TT GL A V CE+FAP+ Y L R WD++++EG+ G V I VR NR+ + ++LDTYPSL L VD F TNSR++ P +IA P R + L D + + VVYLGQ + TK ++ T+ ++ + L IYG WDR D + W+G L I LY A ++L TTE QR LGMVNNRVFEAL+ +A T D F E+ L H L + A RAV L + R R F +++Y+ R ++LS + V
Sbjct: 13 ASGQLSIALHAQSRSELHGWVAGSEITTRGLCAALIKRKDVAACEIFAPFYYGALGTRIWDILIIEGFSGPVEHVIRTVRRMNRKAFIAHWFLDTYPSLSAVAALQVDLFFTNSRIVASRGFHAAAERLGQDPQQPWLAIADTKPR-RFVALGVDESFCEKTQNDIQIDQSLVVYLGQASVTKRMLLPSLLTISQIPGIRLEIYGSAWDRFADEENKYLHLVQCCWKGKLESKAIPELYRRAAIILGTTESEQRKLGMVNNRVFEALASSSADTTFIAFEEKGNDEFIELRRLLQNSQHQLTFSPT-QAARAVTKALRSVVQR---ERNNSDFCL-RNSYSRRADTMLSTISLV 360
BLAST of mRNA_S-latissima_F_contig1063.538.1 vs. uniprot
Match: A0A397DEW5_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DEW5_9STRA) HSP 1 Score: 135 bits (339), Expect = 5.120e-29 Identity = 87/237 (36.71%), Postives = 123/237 (51.90%), Query Frame = 1
Query: 253 SNREVVVLFYYLDTYPSLWVTGKLDVDAFLTNSRVLLPHLQKASIAPMAPASRLLHLAADPLVMWQVPPHP-AYGHNVVYLGQFA--PTKHRIVETLREVAPLGLSIYGVGWDRHEDAAELLPFWRGVLPLGDIASLYASAKVVLSTTEKYQRSLGMVNNRVFEALSCGAAVVTDGFPEMEALFGDHVLYYREAGDAKRAVEFLLENDTARAEMSRRGPPFVSSKHTYAARVPSVLS 954
S ++ +F ++ L +LDVDAF TNS L L+ P AP + + LAA+ P P + +V++G TK + LRE P GL+IYG WD E P+W G+LP D+ +Y+SA+VVL T QR GM+NNRVFE L+ G+ ++ D + +EAL GDH+LYY + GD R + L + E+ FV S HTY RV V++
Sbjct: 41 SQVDLFFVFIFISRQAGLNTIQQLDVDAFFTNSHEALELLK-----PHAPHTEFMLLAAESPS--STAPRPVSTASTIVFVGNAIGISTKRDLATMLREAIPFGLTIYGYAWDL---VPEFTPYWGGILPPEDLPRVYSSARVVLGATMDGQRRSGMINNRVFEVLAAGSILINDHYGALEALLGDHILYYTKPGDVTRHMRQLSAFPYSPFELQA----FVRSAHTYDHRVRQVVA 263
BLAST of mRNA_S-latissima_F_contig1063.538.1 vs. uniprot
Match: A0A6H5JH34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH34_9PHAE) HSP 1 Score: 123 bits (309), Expect = 6.770e-25 Identity = 67/152 (44.08%), Postives = 88/152 (57.89%), Query Frame = 1
Query: 532 LREVAPLGLSIYGVGWDRHEDAAELLPFWRGVLPLGDIASLYASAKVVLSTTEKYQRSLGMVNNRVFEALSCGAAVVTDGFPEMEALFGDHVLYYREAGDAKRAVEFLLEN------DTARAEMSRRGPPFVSSKHTYAARVPSVLSAMESV 969
LRE AP GL IYG GW +D E +WRGVLP D+A +Y SA VV+ T QR G +NNRV+EALS GA +++D FP +E FGD +LY R GD R +E LL + D A R+ + HT++ RV +LS + S+
Sbjct: 11 LREAAPFGLDIYGNGW---QDFPEFSEYWRGVLPQEDLAFVYGSALVVIGVTTDAQRESGKINNRVYEALSVGAPLISDHFPALETTFGDALLYARRRGDVARHIESLLHSQQAVGRDNTEASKRRQRRDMIEDGHTWSQRVEDILSFVGSL 159
BLAST of mRNA_S-latissima_F_contig1063.538.1 vs. uniprot
Match: D7FQ36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ36_ECTSI) HSP 1 Score: 122 bits (307), Expect = 1.180e-24 Identity = 66/152 (43.42%), Postives = 90/152 (59.21%), Query Frame = 1
Query: 532 LREVAPLGLSIYGVGWDRHEDAAELLPFWRGVLPLGDIASLYASAKVVLSTTEKYQRSLGMVNNRVFEALSCGAAVVTDGFPEMEALFGDHVLYYREAGDAKRAVEFLLEN------DTARAEMSRRGPPFVSSKHTYAARVPSVLSAMESV 969
LRE AP GL IYG GW + +E +WRGVLP D+A +Y SA V+ T QR G +NNRV+EALS GA +++D FP +EA FGD +LY R GD R +E LL++ D A R+ + + HT++ RV +LS + S+
Sbjct: 11 LREAAPFGLDIYGNGWQEFPEFSE---YWRGVLPQEDLAFVYGSALAVVGVTTDAQRGSGKINNRVYEALSVGAPLISDHFPALEATFGDALLYARRRGDVARHIESLLQSQQAVGCDNTEASNRRQRRAMIEAGHTWSQRVEDILSFVGSL 159
BLAST of mRNA_S-latissima_F_contig1063.538.1 vs. uniprot
Match: A0A6H5KP81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP81_9PHAE) HSP 1 Score: 103 bits (257), Expect = 6.940e-19 Identity = 94/274 (34.31%), Postives = 128/274 (46.72%), Query Frame = 3
Query: 1716 LALRPNAPTVLVIYRAGSPPPESLRWDIESAVDGVAGGARLVFL-----AVGEAFPDVSAAAATRPEGVER-TRWTTLEHRLSLLLA----IVSAGEQRGSVDPSELRAVGMDAAMEAMGYRQWCCSADLVAVYAEVGDALERHFLHYLAGAQPSRFVRTALLVPCSSSETS---RHRRLSPEEILASRFRTERGSRGGRQARLDGEEEDPKSKEESVSWAKRVQQGDEGPPHSPGRERTTWGGRYQDPT----------LRDSIEQALFGISR 2468
L +RPNAP VLV+YR+ SPPP LR D++SA VAGGAR+ F+ +G + V R G E +R L+ R+S LLA + GE ++D L G++AA EA G+ +WCCS VGD LER FLH L G SR VRTA L + S +H E +A R G G L+ + D W + + G G S R + GG + + T L++ +EQ LFG+ +
Sbjct: 368 LVVRPNAPLVLVVYRSESPPPGQLRRDLQSAAGAVAGGARIAFMETTAETLGVSDSGVECFGWGRRIGAEELSRLQDLQTRVSRLLADAGRAAAHGEHGNTLDVDFL---GVEAAREAHGFMEWCCS---------VGDPLERWFLHRLVGEHASRVVRTAFLAVAAGGPESAEQQHGFGRQEHEIARRRHGMAGQHGKALTFLEAQRLD------CYEWVEHL--GGCGEGRSCPRSVLSEGGYFAEETGGKTCPSASRLKNKVEQTLFGVRK 621
BLAST of mRNA_S-latissima_F_contig1063.538.1 vs. uniprot
Match: A0A7C3DFS5_9BACT (Tetratricopeptide repeat protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C3DFS5_9BACT) HSP 1 Score: 102 bits (255), Expect = 1.170e-18 Identity = 78/262 (29.77%), Postives = 120/262 (45.80%), Query Frame = 1
Query: 166 EGLSDRTWDLVLVEGYMGSVPAFIHEVRASNREVVVLFYYLDTYPSL----------WVTGKLDVDAFLTNSRVLLPHLQKASIAPMAPASRL---------LHLAADPLVMWQVPPHPAYGHNVVYLGQFAPTKHRIVETLREVAPLGLSIYGVGWDRHEDAAELLPFWRGVLPLGDIASLYASAKVVLSTTEKYQRSLGMVNNRVFEALSCGAAVVTDGFPEMEALFGDHVLYYREAGDAKRAVEFLLENDTARAEMSRR 894
EGL+D L +V+ + P IH SN ++V+ FY YP W+ + D L+ + + A A L + + AD + PP P Y HN+V++G + L + PLGL IYG GW ED EL + G + ++ +Y+SAK+VLS + + + + R++EA +CGAAVV+D + +FGD +++ D V+FLLEND AR + R
Sbjct: 170 EGLADALSQLDIVDQAVVYTPVTIH----SNLDLVLSFY---PYPETLFVPEAANFWWLQAGVLQDESLSKIDAAIALYEDFFAAGTGVAKWLRQYEREAAFMLMGADLGIYRPYPPMPQYRHNIVFIGNNYGRDEILERYLLPLVPLGLRIYGSGW---EDVPELGEAFLGSIHPREVPKVYSSAKIVLSVHKSWHARMDIPTTRLWEATACGAAVVSDPVSLGKQIFGDAIVWSEGRRDLVEKVQFLLENDGARQALKAR 421 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1063.538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1063.538.1 >prot_S-latissima_F_contig1063.538.1 ID=prot_S-latissima_F_contig1063.538.1|Name=mRNA_S-latissima_F_contig1063.538.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=554bp MHGWVAGSEVTTAGLQRAFQALSVVDRCEVFAPYSYEGLSDRTWDLVLVEback to top mRNA from alignment at S-latissima_F_contig1063:47482..108157- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig1063.538.1 ID=mRNA_S-latissima_F_contig1063.538.1|Name=mRNA_S-latissima_F_contig1063.538.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=60676bp|location=Sequence derived from alignment at S-latissima_F_contig1063:47482..108157- (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig1063:47482..108157- >mRNA_S-latissima_F_contig1063.538.1 ID=mRNA_S-latissima_F_contig1063.538.1|Name=mRNA_S-latissima_F_contig1063.538.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=3324bp|location=Sequence derived from alignment at S-latissima_F_contig1063:47482..108157- (Saccharina latissima SLPER63f female)back to top |