mRNA_S-latissima_F_contig1059.493.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1059.493.1
Unique NamemRNA_S-latissima_F_contig1059.493.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
[Close]
BLAST of mRNA_S-latissima_F_contig1059.493.1 vs. uniprot
Match: D7G557_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G557_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.470e-12
Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = -1 
Query:   73 CMKQPMWGVLTGGAGTTCTEHKSDISGGLAINFRVRCEFAR---CRKLARWGLDGKQPTHCPEHDPLEEG 273
            C  +P WG    G  + C +HK D++ G AI+F  RC  A    CR +ARWG++G+QPTHC +H     G
Sbjct:  163 CTSRPGWGYWADGKASVCGKHKGDLTEGFAISFTQRCTVAGVKGCRAVARWGVEGEQPTHCEKHGAPRAG 232
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1059.493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G557_ECTSI2.470e-1242.86EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1059contigS-latissima_F_contig1059:28834..29216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size385
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815432.265531-CDS-S-latissima_F_contig1059:28833..292141622815432.265531-CDS-S-latissima_F_contig1059:28833..29214Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1059 28834..29214 +
1693924880.7812479-CDS-S-latissima_F_contig1059:28833..292141693924880.7812479-CDS-S-latissima_F_contig1059:28833..29214Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1059 28834..29214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1059.493.1prot_S-latissima_F_contig1059.493.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1059 28834..29214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1059.493.1

>prot_S-latissima_F_contig1059.493.1 ID=prot_S-latissima_F_contig1059.493.1|Name=mRNA_S-latissima_F_contig1059.493.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=127bp
PTYCPVRRATRTSSGAIFRDSTNQPFLEGVMFRAVSGLLSIQPPSRQFTT
SRELAPHSEVDRQAARDVALVFGTGSACATSQHTPHRLLHAGKMRATTGA
DVYHAFLSMLLAVRRPLAVLDVETRFC
back to top

mRNA from alignment at S-latissima_F_contig1059:28834..29216+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1059.493.1 ID=mRNA_S-latissima_F_contig1059.493.1|Name=mRNA_S-latissima_F_contig1059.493.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=383bp|location=Sequence derived from alignment at S-latissima_F_contig1059:28834..29216+ (Saccharina latissima SLPER63f female)
CCCACATACTGCCCTGTGCGAAGGGCTACGAGAACGTCTAGTGGTGCAAT
CTTTCGCGACAGTACAAACCAGCCCTTCCTCGAGGGGGTCATGTTCAGGG
CAGTGAGTGGGCTGCTTTCCATCCAACCCCCATCGCGCCAATTTACGACA
TCTCGCGAACTCGCACCGCACTCTGAAGTTGATCGCCAGGCCGCCAGAGA
TGTCGCTCTTGTGTTCGGTACAGGTAGTGCCTGCGCCACCAGTCAGCACA
CCCCACATCGGTTGCTTCATGCAGGAAAAATGCGAGCAACGACTGGCGCA
GATGTTTACCATGCCTTCCTCAGCATGCTGCTTGCAGTACGCCGCCCTCT
CGCTGTCCTGGACGTTGAAACTCGGTTTTGCCG
back to top

Coding sequence (CDS) from alignment at S-latissima_F_contig1059:28834..29216+

>mRNA_S-latissima_F_contig1059.493.1 ID=mRNA_S-latissima_F_contig1059.493.1|Name=mRNA_S-latissima_F_contig1059.493.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=762bp|location=Sequence derived from alignment at S-latissima_F_contig1059:28834..29216+ (Saccharina latissima SLPER63f female)
CCCACATACTGCCCTGTGCGAAGGGCTACGAGAACGTCTAGTGGTGCAAT
CTTTCGCGACAGTACAAACCAGCCCTTCCTCGAGGGGGTCATGTTCAGGG
CAGTGAGTGGGCTGCTTTCCATCCAACCCCCATCGCGCCAATTTACGACA
TCTCGCGAACTCGCACCGCACTCTGAAGTTGATCGCCAGGCCGCCAGAGA
TGTCGCTCTTGTGTTCGGTACAGGTAGTGCCTGCGCCACCAGTCAGCACA
CCCCACATCGGTTGCTTCATGCAGGAAAAATGCGAGCAACGACTGGCGCA
GATGTTTACCATGCCTTCCTCAGCATGCTGCTTGCAGTACGCCGCCCTCT
CGCTGTCCTGGACGTTGAAACTCGGTTTTGCCCCACATACTGCCCTGTGC
GAAGGGCTACGAGAACGTCTAGTGGTGCAATCTTTCGCGACAGTACAAAC
CAGCCCTTCCTCGAGGGGGTCATGTTCAGGGCAGTGAGTGGGCTGCTTTC
CATCCAACCCCCATCGCGCCAATTTACGACATCTCGCGAACTCGCACCGC
ACTCTGAAGTTGATCGCCAGGCCGCCAGAGATGTCGCTCTTGTGTTCGGT
ACAGGTAGTGCCTGCGCCACCAGTCAGCACACCCCACATCGGTTGCTTCA
TGCAGGAAAAATGCGAGCAACGACTGGCGCAGATGTTTACCATGCCTTCC
TCAGCATGCTGCTTGCAGTACGCCGCCCTCTCGCTGTCCTGGACGTTGAA
ACTCGGTTTTGC
back to top