mRNA_S-latissima_F_contig1059.492.1 (mRNA) Saccharina latissima SLPER63f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-latissima_F_contig1059.492.1
Unique NamemRNA_S-latissima_F_contig1059.492.1
TypemRNA
OrganismSaccharina latissima SLPER63f female (Saccharina latissima SLPER63f female)
Homology
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BLAST of mRNA_S-latissima_F_contig1059.492.1 vs. uniprot
Match: A0A6H5L6E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E3_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.530e-7
Identity = 30/78 (38.46%), Postives = 42/78 (53.85%), Query Frame = 3 
Query:  381 ADGMATVCTGHKNDISGDHVIYFRAACHV---DDCTKLSRWGLDGKQPTHCPHHGALQDGLVCIVKPTRSKRNFRSTS 605
            AD  A+VC  HK D++    I F   C V     C  ++RWG+DG+ PTHC  HGA + G   +  P+  +R   S+S
Sbjct:  172 ADVTASVCAKHKGDLTEGFAINFNRQCKVAGVKGCIAVARWGVDGEHPTHCDKHGAPRAGEGFVRVPSSGRRTSASSS 249
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BLAST of mRNA_S-latissima_F_contig1059.492.1 vs. uniprot
Match: D7G557_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G557_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.060e-7
Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 3 
Query:  381 ADGMATVCTGHKNDISGDHVIYFRAACHV---DDCTKLSRWGLDGKQPTHCPHHGALQDGLVCIVKPTRSKR 587
            ADG A+VC  HK D++    I F   C V     C  ++RWG++G+QPTHC  HGA + G   +  P+  +R
Sbjct:  173 ADGKASVCGKHKGDLTEGFAISFTQRCTVAGVKGCRAVARWGVEGEQPTHCEKHGAPRAGEGFVRVPSSGRR 244
The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1059.492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6E3_9PHAE1.530e-738.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G557_ECTSI2.060e-740.28EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-latissima_F_contig1059contigS-latissima_F_contig1059:6092..7229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef902022-09-19
OGS1.0 of Saccharina latissima SLPER63f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog2880.D7G557
Hectar predicted targeting categoryother localisation
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1138
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-latissima_F_contig1059.492.1prot_S-latissima_F_contig1059.492.1Saccharina latissima SLPER63f femalepolypeptideS-latissima_F_contig1059 6166..6750 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815432.2019844-UTR-S-latissima_F_contig1059:6091..61651622815432.2019844-UTR-S-latissima_F_contig1059:6091..6165Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1059 6092..6165 +
1693924880.7145844-UTR-S-latissima_F_contig1059:6091..61651693924880.7145844-UTR-S-latissima_F_contig1059:6091..6165Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1059 6092..6165 +
1622815432.2288225-UTR-S-latissima_F_contig1059:6750..72291622815432.2288225-UTR-S-latissima_F_contig1059:6750..7229Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1059 6751..7229 +
1693924880.768987-UTR-S-latissima_F_contig1059:6750..72291693924880.768987-UTR-S-latissima_F_contig1059:6750..7229Saccharina latissima SLPER63f femaleUTRS-latissima_F_contig1059 6751..7229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815432.2172825-CDS-S-latissima_F_contig1059:6165..67501622815432.2172825-CDS-S-latissima_F_contig1059:6165..6750Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1059 6166..6750 +
1693924880.7543366-CDS-S-latissima_F_contig1059:6165..67501693924880.7543366-CDS-S-latissima_F_contig1059:6165..6750Saccharina latissima SLPER63f femaleCDSS-latissima_F_contig1059 6166..6750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-latissima_F_contig1059.492.1

>prot_S-latissima_F_contig1059.492.1 ID=prot_S-latissima_F_contig1059.492.1|Name=mRNA_S-latissima_F_contig1059.492.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=195bp
MVNVGSRHSKRCSYDSCTKYPSFSLEGRKTAVYCKQHAEDGMVNAYQRRC
SHDSCTTKPSFNVEGTKPAVYCKKHAEVGMVDVVIKHCSHDSCTSRASWG
RPADGMATVCTGHKNDISGDHVIYFRAACHVDDCTKLSRWGLDGKQPTHC
PHHGALQDGLVCIVKPTRSKRNFRSTSDRAVKSPPFCVKTECSF*
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mRNA from alignment at S-latissima_F_contig1059:6092..7229+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-latissima_F_contig1059.492.1 ID=mRNA_S-latissima_F_contig1059.492.1|Name=mRNA_S-latissima_F_contig1059.492.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=1138bp|location=Sequence derived from alignment at S-latissima_F_contig1059:6092..7229+ (Saccharina latissima SLPER63f female)
GCACCACGAAGCCGAGCTTCAATGTCGAGGGCACGAAGCGGCCTGTGTAC
TGCAAGGAACATGCAGGCGACGGCATGGTCAACGTAGGTAGCAGGCATAG
CAAGCGTTGCTCATATGACTCCTGCACGAAATACCCGAGCTTCTCTCTCG
AAGGCAGGAAAACGGCGGTGTATTGCAAACAACACGCTGAAGACGGTATG
GTGAACGCTTACCAGAGGCGTTGCTCACATGACTCCTGCACCACGAAGCC
GAGTTTCAATGTCGAGGGCACGAAGCCGGCAGTGTACTGCAAGAAACATG
CGGAAGTCGGAATGGTGGATGTCGTCATTAAGCACTGCTCACACGACTCT
TGCACTAGTCGAGCGAGCTGGGGTCGACCAGCCGATGGCATGGCCACCGT
CTGCACCGGCCATAAGAACGATATATCGGGCGACCATGTGATCTACTTCA
GGGCCGCCTGCCATGTGGATGACTGTACGAAACTGTCGCGGTGGGGGCTT
GACGGGAAGCAGCCCACTCACTGCCCTCATCACGGCGCTCTTCAGGACGG
ACTCGTCTGCATTGTCAAGCCGACTCGCAGCAAAAGAAACTTCCGTAGCA
CCTCCGACCGTGCCGTGAAGAGCCCCCCATTCTGTGTAAAAACTGAGTGT
TCGTTTTGAAAGGTTTCGAGGTGAACTGGGATATTGTTCGGGATGGTTCG
ACTATGCCTGGTGAGTTGCGAGACACCGCGTTTGTTTTCACCACGGTATA
CCGTATTTGTCCATATCAGGGCATGTTGAAGGCGTGCCTTGATGTCTCTC
CAACGTATTCGTCTGGTCCCATGGGCGTTGCTTATGACACTGTTTTGGAG
CCTAGAACGAACCGGTTTCTGCGTGAGTGTTGAAGAGTAGACTGCCGGAG
TAGCCTACACTAGGTTGGGCGTATACTTGATAGCAGGCGTTCTTCGGAAG
GGGTAGCACGGTTTGGCCGAAATATGTATGACTTACTATTATTAATAGTA
TGAATATTAGTGTGGTCCCTCCTCATCCTAATGTCGTTGGGATACTATTG
TTAATAGTGTTTTACACTGGTATTCGTGATACACCTACTGCAGGCTTTGG
GATTGTTTATCGGGCTGAGTTGTTTTCTTTTTTGTTTC
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Coding sequence (CDS) from alignment at S-latissima_F_contig1059:6092..7229+

>mRNA_S-latissima_F_contig1059.492.1 ID=mRNA_S-latissima_F_contig1059.492.1|Name=mRNA_S-latissima_F_contig1059.492.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1170bp|location=Sequence derived from alignment at S-latissima_F_contig1059:6092..7229+ (Saccharina latissima SLPER63f female)
ATGGTCAACGTAGGTAGCAGGCATAGCAAGCGTTGCTCATATGACTCCTG
CACGAAATACCCGAGCTTCTCTCTCGAAGGCAGGAAAACGGCGGTGTATT
GCAAACAACACGCTGAAGACGGTATGGTGAACGCTTACCAGAGGCGTTGC
TCACATGACTCCTGCACCACGAAGCCGAGTTTCAATGTCGAGGGCACGAA
GCCGGCAGTGTACTGCAAGAAACATGCGGAAGTCGGAATGGTGGATGTCG
TCATTAAGCACTGCTCACACGACTCTTGCACTAGTCGAGCGAGCTGGGGT
CGACCAGCCGATGGCATGGCCACCGTCTGCACCGGCCATAAGAACGATAT
ATCGGGCGACCATGTGATCTACTTCAGGGCCGCCTGCCATGTGGATGACT
GTACGAAACTGTCGCGGTGGGGGCTTGACGGGAAGCAGCCCACTCACTGC
CCTCATCACGGCGCTCTTCAGGACGGACTCGTCTGCATTGTCAAGCCGAC
TCGCAGCAAAAGAAACTTCCGTAGCACCTCCGACCGTGCCGTGAAGAGCC
CCCCATTCTGTGTAAAAACTGAGTGTTCGTTTTGAATGGTCAACGTAGGT
AGCAGGCATAGCAAGCGTTGCTCATATGACTCCTGCACGAAATACCCGAG
CTTCTCTCTCGAAGGCAGGAAAACGGCGGTGTATTGCAAACAACACGCTG
AAGACGGTATGGTGAACGCTTACCAGAGGCGTTGCTCACATGACTCCTGC
ACCACGAAGCCGAGTTTCAATGTCGAGGGCACGAAGCCGGCAGTGTACTG
CAAGAAACATGCGGAAGTCGGAATGGTGGATGTCGTCATTAAGCACTGCT
CACACGACTCTTGCACTAGTCGAGCGAGCTGGGGTCGACCAGCCGATGGC
ATGGCCACCGTCTGCACCGGCCATAAGAACGATATATCGGGCGACCATGT
GATCTACTTCAGGGCCGCCTGCCATGTGGATGACTGTACGAAACTGTCGC
GGTGGGGGCTTGACGGGAAGCAGCCCACTCACTGCCCTCATCACGGCGCT
CTTCAGGACGGACTCGTCTGCATTGTCAAGCCGACTCGCAGCAAAAGAAA
CTTCCGTAGCACCTCCGACCGTGCCGTGAAGAGCCCCCCATTCTGTGTAA
AAACTGAGTGTTCGTTTTGA
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