mRNA_S-latissima_F_contig1058.491.1 (mRNA) Saccharina latissima SLPER63f female
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Overview
Homology
BLAST of mRNA_S-latissima_F_contig1058.491.1 vs. uniprot
Match: A0A6H5KGL7_9PHAE (SGL domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGL7_9PHAE) HSP 1 Score: 299 bits (766), Expect = 7.180e-96 Identity = 146/241 (60.58%), Postives = 181/241 (75.10%), Query Frame = 1
Query: 19 VPGSGELVLCEHGNRVVTRMEKNGTRTVLATHFNGHRLNSPNDLVFSKRGDLYFTDPPFGFPLMEADPEFAAFGIAGVYRVRKETMEAARASD-----------DICAR----PNGLAFSPDSSKMYLTHSSDNEPFWYVYDVSEDGDLSNRRLFFDGRPIQQMTGYPSHGPDGMKVDERGNIFSSASGGVAVLSPSGEHLGMIIVDEMFISNVVIGGDGYLYMTASDSILRIKVLVKPAP 696
VPGSGE+V+CEHG+R VTRME NGT+T LATHFNGHRLNSPNDL SKRGD+YFTDPP+G PL + DP FAA G GVYR+R+E +EAA+A + ++ + PNGLAFSPD SK+YL SS P W+VYDV EDG+L+NRRLF D RP+++ G PDG+KVDERGNIF++A GGVAV+SP G+HLGMI+ +F++NV + DGYLYM AS+ +LR+KVL K AP
Sbjct: 141 VPGSGEVVMCEHGDRRVTRMENNGTKTPLATHFNGHRLNSPNDLAISKRGDIYFTDPPYGLPLRQKDPGFAAHGFGGVYRIRREVIEAAKAGEAGAREAAGAEPELMEKEFTWPNGLAFSPDFSKLYLAVSSPERPAWHVYDVGEDGELANRRLFLDARPMKEAYGVGV--PDGVKVDERGNIFAAAPGGVAVVSPGGQHLGMILTGGVFVANVALADDGYLYMAASERVLRVKVLTKAAP 379
BLAST of mRNA_S-latissima_F_contig1058.491.1 vs. uniprot
Match: A0A7S3H6B4_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6B4_9STRA) HSP 1 Score: 188 bits (478), Expect = 2.730e-54 Identity = 98/237 (41.35%), Postives = 145/237 (61.18%), Query Frame = 1
Query: 34 ELVLCEHGNRVVTRMEKNGTRTVLATHFNGHRLNSPNDLVFSKRGDLYFTDPPFGFPLMEADPEFAAFGIAGVYRVRKE----TMEAARASDDI------CARPNGLAFSPDSSKMYLTHSSDNEPFWYVYDVSEDGDLSNRRLFFDGRPIQQMTGYPSHG--------PDGMKVDERGNIFSSASGGVAVLSPSGEHLGMIIVDEMFISNVVIGGDGYLYMTASDSILRIKVLVKP 690
+L+ C+HG R ++ + +NGTR+ +ATHFN RLNSPNDL+ S G LYFTDPP+G +GVY +RKE ME+ A+D + + PNGLAFSPD SK+Y++HS + PF V+DV+++G + N R+FFD + + + + PDGMKVD GN+F++ GGV V+SP+G+ +G ++ +SN+ G DG LY+T+ D I+R+ + KP
Sbjct: 20 DLLACQHGERAISLLRENGTRSAVATHFNHSRLNSPNDLIMSPDGHLYFTDPPYGLITKSNGAVGQELPHSGVYMIRKEYLQIAMESGEATDQVWLMDGTMSSPNGLAFSPDFSKLYVSHSDKSAPFLKVFDVADNGLIKNGRVFFDAKELYEKECAMENDSACANVGLPDGMKVDINGNVFATGPGGVLVISPAGKLIGRFRLNRQ-VSNLAFGADGRLYITSKDLIVRVWIKTKP 255
BLAST of mRNA_S-latissima_F_contig1058.491.1 vs. uniprot
Match: A0A534N9W9_9DELT (SMP-30/gluconolactonase/LRE family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534N9W9_9DELT) HSP 1 Score: 191 bits (485), Expect = 3.460e-54 Identity = 106/230 (46.09%), Postives = 134/230 (58.26%), Query Frame = 1
Query: 1 GLMGVQVPGSGELVLCEHGNRVVTRMEKNGTRTVLATHFNGHRLNSPNDLVFSKRGDLYFTDPPFGFPLMEADPEFAAFGIAGVYRVRKETMEAARASDDICARPNGLAFSPDSSKMYLTHSSDNEPFWYVYDVSEDGDLSNRRLFFDGRPIQQMTGYPSHGPDGMKVDERGNIFSSASGGVAVLSPSGEHLGMIIVDEMFISNVVIGGDG-YLYMTASDSILRIKVLVK 687
G G+ SG LVL EHG+R + R+E +G +T+LA + G RLNSPNDLVF GDLYFTDPPFG P DP+ GVYR+ KE D PNG+AFSPD K+Y+T N W VYDV DG L+N R+F D +Q P GPDG KVD GN+F + GG+++ +P G HLG I + SN+ G DG LY+TA +I RI++ K
Sbjct: 128 GSNGLTFDSSGRLVLAEHGDRRIARLENDGRKTILADRYAGKRLNSPNDLVFKSNGDLYFTDPPFGLPQAFDDPQ-KELPFQGVYRLSKEGKLTLLIKD--IKAPNGIAFSPDEKKLYVTDVDFNRAAWLVYDVKNDGTLANGRVFADASEWKQA---PFSGPDGFKVDREGNVFGARPGGISIFAPDGTHLGSIEIGGPT-SNLAWGDDGSVLYVTAGTAIYRIRLSAK 350
BLAST of mRNA_S-latissima_F_contig1058.491.1 vs. uniprot
Match: W7T4M9_9STRA (Gluconolactonase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4M9_9STRA) HSP 1 Score: 193 bits (490), Expect = 4.790e-54 Identity = 116/254 (45.67%), Postives = 151/254 (59.45%), Query Frame = 1
Query: 22 PGSGELVLCEHGNRVVTRMEKNGTRTVLATHFNGHRLNSPNDLVFSKRGDLYFTDPPFGFPLMEADP--EFAAFGIAGVYRVRKETME-----AARASDDI------CARPNGLAFSPDSSKMYLTHSSDNEPFWYVYDVSEDGDL----SNRRLFFDGRPIQQMT---GYPSHG-PDGMKVDERGNIFSSASGGVAVLSPSGEHLGMIIVDEMFISNVVIGGDG--------YLYMTASDSILRIKVLVKPAP 696
PGSG +V+CEHG R V+R+E NG+ T LATH+ G RLNSPNDLVF GDLYFTDPP+G ++ADP E +FG VYRV KE ME +AR S ++ RPNGLAFSPD + +Y+ S +P W V+++ L R+F D R Q+ G G PDG+KVDE GNI+++ GGV + SP GE LG I+ + NV GG +LY+ A+D + RI +LV+PAP
Sbjct: 173 PGSGLVVMCEHGERRVSRLEANGSFTPLATHYQGRRLNSPNDLVFGPGGDLYFTDPPYGLNGLDADPARELESFG---VYRVSKEAMEQQVVSSARGSAEVQLVFDGLKRPNGLAFSPDFTHLYVGDSDAEDPHWVVFEMDASTGLVKGKEGARVFADARAYQERDDAGGKTRIGNPDGLKVDEDGNIWATGPGGVLIFSPQGERLGTILTGKKT-GNVAFGGKEKSRGGKGMFLYVCANDVVARIPILVRPAP 422
BLAST of mRNA_S-latissima_F_contig1058.491.1 vs. uniprot
Match: A0A7C5EZE2_9BACT (SMP-30/gluconolactonase/LRE family protein n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7C5EZE2_9BACT) HSP 1 Score: 186 bits (471), Expect = 1.100e-52 Identity = 101/230 (43.91%), Postives = 135/230 (58.70%), Query Frame = 1
Query: 1 GLMGVQVPGSGELVLCEHGNRVVTRMEKNGTRTVLATHFNGHRLNSPNDLVFSKRGDLYFTDPPFGFPLMEADPEFAAFGIAGVYRVRKETMEAARASDDICARPNGLAFSPDSSKMYLTHSSDNEPFWYVYDVSEDGDLSNRRLFFDGRPIQQMTGYPSHGPDGMKVDERGNIFSSASGGVAVLSPSGEHLGMIIVDEMFISNVVIGGDGY-LYMTASDSILRIKVLVK 687
G G+ G+LVLC+HG+R + R+E +GT TVLA +NGHR+NSPNDLVF+ GDLYFTDPPFG P DP A + GVYRV ++ SD PNG+AFSPD +Y++ W YDV DG ++N R+FFD ++ P GPDG K+D GN+F + GG++V +P HLG I + SNV G DG L++ S+ RI++ K
Sbjct: 80 GSNGLTFDEKGQLVLCKHGDRQIARLEADGTLTVLADRYNGHRINSPNDLVFTSNGDLYFTDPPFGLPKAFDDPNKAP--VQGVYRVLRDGKLTLLISD--IKAPNGIAFSPDEKTLYISDVDPKRAAWLAYDVKSDGTVTNGRVFFDATRWRKD---PFFGPDGFKIDTDGNLFGARPGGISVFAPDSTHLGDIETGQPT-SNVAWGEDGRTLFVAGGSSVYRIRLATK 301
BLAST of mRNA_S-latissima_F_contig1058.491.1 vs. uniprot
Match: A0A1W9GF28_9BACT (Gluconolactonase n=1 Tax=Nitrospira sp. SG-bin1 TaxID=1827376 RepID=A0A1W9GF28_9BACT) HSP 1 Score: 185 bits (470), Expect = 3.400e-52 Identity = 100/230 (43.48%), Postives = 135/230 (58.70%), Query Frame = 1
Query: 1 GLMGVQVPGSGELVLCEHGNRVVTRMEKNGTRTVLATHFNGHRLNSPNDLVFSKRGDLYFTDPPFGFPLMEADPEFAAFGIAGVYRVRKETMEAARASDDICARPNGLAFSPDSSKMYLTHSSDNEPFWYVYDVSEDGDLSNRRLFFDGRPIQQMTGYPSHGPDGMKVDERGNIFSSASGGVAVLSPSGEHLGMIIVDEMFISNVVIGGDG-YLYMTASDSILRIKVLVK 687
G G+ G LVLC HG+R + R+E +GT TVLA ++GHR+NSPNDLVF+ GD YFTDPPFG P DP+ A + GVYRV ++ +D PNG+AFSPD +Y++ W YDV DG ++N R+FFD ++ P GPDG KVD+ GN+F + GG++V +P G HLG I SNV G DG L++T S+ RI++ +
Sbjct: 109 GSNGLTFDEKGRLVLCRHGDRQIARLEADGTVTVLADRYDGHRINSPNDLVFTSNGDFYFTDPPFGLPKAFDDPDKAP--VQGVYRVSRDGTLTLLITD--IKAPNGIAFSPDEKTLYVSDVDPKRAAWLAYDVKADGTVTNGRIFFDATRWRKD---PFFGPDGFKVDQNGNLFGARPGGISVFAPDGTHLGDIETGRPT-SNVAWGEDGRMLFVTGGSSVYRIRLTTR 330
BLAST of mRNA_S-latissima_F_contig1058.491.1 vs. uniprot
Match: A0A2E1TWC0_9GAMM (Gluconolactonase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E1TWC0_9GAMM) HSP 1 Score: 185 bits (470), Expect = 4.670e-52 Identity = 108/227 (47.58%), Postives = 138/227 (60.79%), Query Frame = 1
Query: 1 GLMGVQVPGSGELVLCEHGNRVVTRMEKNGTRTVLATHFNGHRLNSPNDLVFSKRGDLYFTDPPFGFPLMEADPEFAAFGIAGVYRVRKETMEAARASDDICARPNGLAFSPDSSKMYLTHSSDNEPFWYVYDVSEDGDLSNRRLFFDGRPIQQMTGYPSHGPDGMKVDERGNIFSSASGGVAVLSPSGEHLGMIIVDEMFISNVVIGGDGY-LYMTASDSILRIKV 678
G G+ + G L+L EHGNRVV+R+E NG+RT+LA +FNG RLNSPND V+ G LYFTDPP+G +E DP G+YR+ T E + + +RPNG+A S D +Y+ +S +N WY Y V DG LSN+R+FFD Q TG DGMKVD GNIF++ GGV V P G HLG I DE+ +NV G DG LYMTA + RI++
Sbjct: 121 GSNGLNIDSEGRLLLMEHGNRVVSRIEANGSRTILADNFNGSRLNSPNDSVWHTNGWLYFTDPPYGMAGLENDP-MRELDFNGIYRLNPGTGEV-QLLEQSQSRPNGIALSVDERTLYVANSDENNKVWYSYXVGNDGRLSNQRVFFDVND-QDATG----AADGMKVDIDGNIFATGPGGVWVFDPGGNHLGTIKPDEVP-ANVGWGDDGSTLYMTARTGLYRIRL 339
BLAST of mRNA_S-latissima_F_contig1058.491.1 vs. uniprot
Match: A0A1G3ZYZ4_9BACT (Gluconolactonase n=1 Tax=Verrucomicrobia bacterium GWF2_62_7 TaxID=1802432 RepID=A0A1G3ZYZ4_9BACT) HSP 1 Score: 183 bits (465), Expect = 1.970e-51 Identity = 104/231 (45.02%), Postives = 130/231 (56.28%), Query Frame = 1
Query: 1 GLMGVQVPGSGELVLCEHGNRVVTRMEKNGTRTVLATHFNGHRLNSPNDLVFSKRGDLYFTDPPFGFPLMEADPEFAAFGIAGVYRVRKETMEAARASDDICARPNGLAFSPDSSKMYLTHSSDNEPFWYVYDVSEDGDLSNRRLFFDGRPIQQ-MTGYPSHGPDGMKVDERGNIFSSASGGVAVLSPSGEHLGMIIVDEMFISNVVIGGDGY-LYMTASDSILRIKVLVK 687
G G+ + G VLCEHG+R V R+EKNG +T LA F G RLNSPNDLVF GDLYFTDPP+G P + DP GVYR+ + + PNGLAFSPD +Y+ +S W YDV DG L R+FFD P+++ G P DGMKVD RGN+F++ GGV + SP G+HLG + E N G DG LY+TA + R+K K
Sbjct: 110 GSNGLTLDTGGRPVLCEHGDRRVARLEKNGRKTTLADRFEGKRLNSPNDLVFKSNGDLYFTDPPYGLPKLNNDPA-KELPFNGVYRLARNGGLTLLTKE--LNFPNGLAFSPDEKTLYVANSDPQRAIWMAYDVKPDGTLGTGRVFFDATPLRKGRKGLP----DGMKVDCRGNVFATGPGGVLIFSPDGKHLGTLNTGEAT-GNCAWGDDGSTLYITADMFLCRVKTTTK 332
BLAST of mRNA_S-latissima_F_contig1058.491.1 vs. uniprot
Match: A0A356FFN1_9BACT (Gluconolactonase (Fragment) n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356FFN1_9BACT) HSP 1 Score: 180 bits (456), Expect = 3.150e-51 Identity = 101/234 (43.16%), Postives = 137/234 (58.55%), Query Frame = 1
Query: 1 GLMGVQVPGSGELVLCEHGNRVVTRMEKNGTRTVLATHFNGHRLNSPNDLVFSKRGDLYFTDPPFGFPLMEADPEFAAFGIAGVYRVRKETMEAARASDDICARPNGLAFSPDSSKMYLTHSSDNEPFWYVYDVSEDGDLSNRRLFFDGRPIQQMTGYPSHG----PDGMKVDERGNIFSSASGGVAVLSPSGEHLGMIIVDEMFISNVVIGGDG-YLYMTASDSILRIKVLVK 687
G G+ + +G LVLC+HG+R V+R+ K+ + LATH++G RLNSPND V+ GDLYFTDPP+G DP GVYR+ K + D+ RPNG+ FSPD K+Y+ S ++ W VYDV +DG ++N ++FFD T + G PDG+KVD++GNIF++ GGV V +P G HLG I + +N G DG LYMTA RIK+ K
Sbjct: 15 GSNGLLLDPAGNLVLCQHGDRRVSRLRKDWSFEPLATHYDGKRLNSPNDAVYHSNGDLYFTDPPYGLEKRMDDPA-KELAFQGVYRLPKGAAAPVLLTKDV-TRPNGIGFSPDEKKLYVASSDPDKAIWMVYDVQDDGSIANGKVFFDS------TAWFKEGRLGLPDGLKVDQQGNIFATGPGGVLVFAPDGTHLGTIETGQKT-ANCGFGNDGSVLYMTADMFFCRIKLNTK 239
BLAST of mRNA_S-latissima_F_contig1058.491.1 vs. uniprot
Match: A0A2E4LIR7_9GAMM (Gluconolactonase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E4LIR7_9GAMM) HSP 1 Score: 183 bits (464), Expect = 3.600e-51 Identity = 100/227 (44.05%), Postives = 141/227 (62.11%), Query Frame = 1
Query: 1 GLMGVQVPGSGELVLCEHGNRVVTRMEKNGTRTVLATHFNGHRLNSPNDLVFSKRGDLYFTDPPFGFPLMEADPEFAAFGIAGVYRVRKETMEAARASDDICARPNGLAFSPDSSKMYLTHSSDNEPFWYVYDVSEDGDLSNRRLFFDGRPIQQMTGYPSHGPDGMKVDERGNIFSSASGGVAVLSPSGEHLGMIIVDEMFISNVVIGGDGY-LYMTASDSILRIKV 678
G G+ + G L+L EHGNRVV+R+E +G+RT+LA ++ G+RLNSPND V+ G LYFTDPP+G +E DP G G+YR+ E+ E + + +RPNG+A S D +Y+ +S +N WY Y+V G+LSN+++FFD + G + DGMK+D GNIF++ GGV V P G HLG I DE+ +NV G DG LYMTA + R+++
Sbjct: 121 GSNGLNLDXEGRLLLMEHGNRVVSRIETDGSRTILADNYRGNRLNSPNDSVWHSNGWLYFTDPPYGLAGLEQDP-LRELGFNGIYRLNPESGEV-QLLEQTQSRPNGIALSVDERTLYVANSDENNKVWYSYEVGNSGELSNQQVFFD---VNDQDGVGA--ADGMKIDVDGNIFATGPGGVWVFDPGGNHLGTIKPDEVP-ANVAWGDDGSTLYMTARTGLYRVRL 339 The following BLAST results are available for this feature:
BLAST of mRNA_S-latissima_F_contig1058.491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Saccharina latissima female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-latissima_F_contig1058.491.1 >prot_S-latissima_F_contig1058.491.1 ID=prot_S-latissima_F_contig1058.491.1|Name=mRNA_S-latissima_F_contig1058.491.1|organism=Saccharina latissima SLPER63f female|type=polypeptide|length=231bp MGVQVPGSGELVLCEHGNRVVTRMEKNGTRTVLATHFNGHRLNSPNDLVFback to top mRNA from alignment at S-latissima_F_contig1058:143447..145726- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-latissima_F_contig1058.491.1 ID=mRNA_S-latissima_F_contig1058.491.1|Name=mRNA_S-latissima_F_contig1058.491.1|organism=Saccharina latissima SLPER63f female|type=mRNA|length=2280bp|location=Sequence derived from alignment at S-latissima_F_contig1058:143447..145726- (Saccharina latissima SLPER63f female)back to top Coding sequence (CDS) from alignment at S-latissima_F_contig1058:143447..145726- >mRNA_S-latissima_F_contig1058.491.1 ID=mRNA_S-latissima_F_contig1058.491.1|Name=mRNA_S-latissima_F_contig1058.491.1|organism=Saccharina latissima SLPER63f female|type=CDS|length=1386bp|location=Sequence derived from alignment at S-latissima_F_contig1058:143447..145726- (Saccharina latissima SLPER63f female)back to top |